Wall clock time and date at job start Mon Mar 30 2020 02:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 108.01339 * 2 1 4 4 C 1.45117 * 108.27265 * 117.03914 * 2 1 3 5 5 C 1.55237 * 110.06034 * 184.99244 * 4 2 1 6 6 S 1.79275 * 109.70214 * 287.76027 * 5 4 2 7 7 O 1.42101 * 107.93147 * 202.81685 * 6 5 4 8 8 O 1.42108 * 107.92639 * 332.16875 * 6 5 4 9 9 C 1.82375 * 105.88328 * 87.44150 * 6 5 4 10 10 C 1.54637 * 110.74862 * 319.19993 * 9 6 5 11 11 N 1.45433 * 108.86671 * 321.03901 * 10 9 6 12 12 C 1.46900 * 110.99906 * 227.75070 * 11 10 9 13 13 C 1.52997 * 109.47217 * 59.51240 * 12 11 10 14 14 C 1.52996 * 109.47335 * 174.57199 * 13 12 11 15 15 C 1.50697 * 109.47568 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99704 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00500 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99895 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00261 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47169 * 269.99968 * 19 17 15 21 21 H 1.48501 * 109.47473 * 29.99814 * 19 17 15 22 22 H 1.48502 * 109.47378 * 150.00054 * 19 17 15 23 23 H 1.08994 * 109.47658 * 177.04297 * 1 2 3 24 24 H 1.09006 * 109.47369 * 297.05175 * 1 2 3 25 25 H 1.09002 * 109.46957 * 57.04347 * 1 2 3 26 26 H 1.08992 * 109.37018 * 305.17654 * 4 2 1 27 27 H 1.09000 * 109.36880 * 64.93847 * 4 2 1 28 28 H 1.08999 * 109.43314 * 47.82762 * 5 4 2 29 29 H 1.09004 * 109.43265 * 167.73244 * 5 4 2 30 30 H 1.08994 * 109.21996 * 79.53086 * 9 6 5 31 31 H 1.09008 * 109.21953 * 198.91689 * 9 6 5 32 32 H 1.08997 * 109.56850 * 201.22542 * 10 9 6 33 33 H 1.08997 * 109.56890 * 80.85973 * 10 9 6 34 34 H 1.09003 * 109.47065 * 299.51349 * 12 11 10 35 35 H 1.08996 * 109.46636 * 179.51450 * 12 11 10 36 36 H 1.09004 * 109.47306 * 54.57204 * 13 12 11 37 37 H 1.09005 * 109.46989 * 294.57634 * 13 12 11 38 38 H 1.09004 * 109.46920 * 59.99768 * 14 13 12 39 39 H 1.08997 * 109.47589 * 300.00447 * 14 13 12 40 40 H 0.97004 * 119.99935 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8670 1.0365 0.0000 4 6 1.9849 -0.6264 1.2274 5 6 3.5313 -0.5362 1.3297 6 16 4.2816 -1.6599 0.1514 7 8 5.5948 -1.9574 0.6057 8 8 3.3766 -2.7337 -0.0663 9 6 4.4252 -0.7251 -1.4079 10 6 3.1591 0.1280 -1.6538 11 7 1.9910 -0.6348 -1.2432 12 6 0.9458 -0.5931 -2.2746 13 6 1.4924 -1.1779 -3.5785 14 6 0.3672 -1.2596 -4.6120 15 6 0.9056 -1.8349 -5.8965 16 1 1.9463 -2.1148 -5.9684 17 6 0.0699 -2.0041 -6.9800 18 7 -1.1973 -1.6629 -6.8926 19 14 0.7372 -2.7179 -8.5719 20 1 1.2305 -1.6181 -9.4392 21 1 1.8547 -3.6474 -8.2676 22 1 -0.3430 -3.4559 -9.2747 23 1 -0.3634 -1.0262 -0.0530 24 1 -0.3634 0.4674 0.9153 25 1 -0.3633 0.5591 -0.8623 26 1 1.5358 -0.1183 2.0806 27 1 1.6847 -1.6743 1.2313 28 1 3.8503 0.4832 1.1124 29 1 3.8444 -0.8070 2.3381 30 1 5.2947 -0.0699 -1.3548 31 1 4.5525 -1.4239 -2.2348 32 1 3.0826 0.3707 -2.7137 33 1 3.2189 1.0467 -1.0704 34 1 0.6395 0.4398 -2.4399 35 1 0.0873 -1.1785 -1.9456 36 1 1.8872 -2.1765 -3.3916 37 1 2.2887 -0.5376 -3.9582 38 1 -0.0276 -0.2609 -4.7990 39 1 -0.4291 -1.8998 -4.2324 40 1 -1.5437 -1.2918 -6.0660 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192088820.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:19 Heat of formation + Delta-G solvation = -90.922827 kcal Electronic energy + Delta-G solvation = -20597.110481 eV Core-core repulsion = 17538.304859 eV Total energy + Delta-G solvation = -3058.805621 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.80172 -37.75551 -36.86126 -36.55226 -35.12528 -33.50386 -32.23223 -29.77949 -27.87564 -25.78260 -24.58145 -23.87689 -21.91679 -20.98256 -19.43175 -18.93830 -18.08163 -17.59908 -16.72711 -16.57652 -16.30030 -15.72760 -15.61705 -15.41097 -14.97132 -14.79635 -14.56142 -13.92208 -13.60176 -13.53718 -13.40351 -12.99612 -12.93360 -12.75968 -12.66957 -12.54685 -12.46194 -12.17786 -12.03660 -11.91275 -11.72033 -11.64517 -11.53087 -11.32029 -11.12560 -10.65542 -10.53854 -9.49981 -8.69356 -6.39307 -0.77723 1.50862 1.60334 1.78284 2.06842 2.55013 2.74575 2.89102 3.09534 3.15365 3.59566 3.72705 3.85619 3.93363 3.99959 4.18151 4.26111 4.32707 4.41419 4.52900 4.57403 4.63320 4.73780 4.80187 4.82871 4.87146 4.88343 4.94875 5.02251 5.09679 5.28228 5.33390 5.44509 5.54076 5.92548 6.00357 6.05671 6.19407 6.59232 7.41934 8.71845 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.025589 B = 0.004592 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.941244 B = 6096.208779 C = 6820.651845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.042 3.958 3 H 0.090 0.910 4 C -0.092 4.092 5 C -0.604 4.604 6 S 2.428 3.572 7 O -1.006 7.006 8 O -0.971 6.971 9 C -0.586 4.586 10 C 0.035 3.965 11 N -0.539 5.539 12 C 0.070 3.930 13 C -0.095 4.095 14 C 0.011 3.989 15 C -0.619 4.619 16 H 0.046 0.954 17 C -0.039 4.039 18 N -0.938 5.938 19 Si 1.118 2.882 20 H -0.269 1.269 21 H -0.273 1.273 22 H -0.282 1.282 23 H 0.050 0.950 24 H 0.085 0.915 25 H 0.057 0.943 26 H 0.124 0.876 27 H 0.074 0.926 28 H 0.166 0.834 29 H 0.155 0.845 30 H 0.160 0.840 31 H 0.119 0.881 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.058 0.942 38 H -0.006 1.006 39 H -0.014 1.014 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.186 9.342 18.803 22.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.065 4.065 3 H 0.107 0.893 4 C -0.131 4.131 5 C -0.736 4.736 6 S 2.615 3.385 7 O -1.003 7.003 8 O -0.968 6.968 9 C -0.718 4.718 10 C -0.094 4.094 11 N -0.264 5.264 12 C -0.057 4.057 13 C -0.132 4.132 14 C -0.026 4.026 15 C -0.657 4.657 16 H 0.065 0.935 17 C -0.236 4.236 18 N -0.575 5.575 19 Si 0.940 3.060 20 H -0.195 1.195 21 H -0.198 1.198 22 H -0.207 1.207 23 H 0.069 0.931 24 H 0.104 0.896 25 H 0.076 0.924 26 H 0.142 0.858 27 H 0.092 0.908 28 H 0.184 0.816 29 H 0.173 0.827 30 H 0.178 0.822 31 H 0.137 0.863 32 H 0.099 0.901 33 H 0.128 0.872 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.012 0.988 39 H 0.005 0.995 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.154 7.512 17.517 21.144 hybrid contribution -0.191 1.529 0.976 1.824 sum 8.963 9.041 18.493 22.451 Atomic orbital electron populations 1.22316 0.94462 1.02374 1.03357 1.20963 0.96984 0.98343 0.90189 0.89269 1.20366 0.90298 1.03922 0.98529 1.30378 1.07585 1.18524 1.17120 1.07302 0.73675 0.78541 0.78988 1.93492 1.40895 1.84301 1.81588 1.93511 1.65861 1.52058 1.85417 1.30641 1.06776 1.13826 1.20507 1.22631 0.87529 0.94934 1.04325 1.63235 1.07140 1.51297 1.04692 1.22180 0.94047 0.99460 0.90019 1.21454 0.98021 1.00014 0.93748 1.19119 0.94660 0.94502 0.94366 1.22525 0.97806 1.45657 0.99741 0.93544 1.27401 0.94323 0.95447 1.06411 1.70891 1.15157 1.41927 1.29567 0.82919 0.75113 0.76576 0.71437 1.19452 1.19820 1.20735 0.93087 0.89588 0.92369 0.85776 0.90773 0.81581 0.82657 0.82189 0.86276 0.90134 0.87210 0.93244 0.90934 0.93864 0.92390 0.98763 0.99532 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 7.76 71.98 0.56 -2.49 16 2 C 0.04 0.72 2.09 42.50 0.09 0.81 16 3 H 0.09 0.96 6.49 -2.39 -0.02 0.95 16 4 C -0.09 -1.33 4.70 28.97 0.14 -1.19 16 5 C -0.60 -7.15 5.85 72.75 0.43 -6.72 16 6 S 2.43 54.68 4.90 -56.49 -0.28 54.40 16 7 O -1.01 -29.10 18.05 -127.29 -2.30 -31.40 16 8 O -0.97 -32.06 15.89 -127.29 -2.02 -34.08 16 9 C -0.59 -11.18 6.72 72.54 0.49 -10.70 16 10 C 0.03 0.68 5.02 87.14 0.44 1.12 16 11 N -0.54 -13.42 3.38 -885.41 -2.99 -16.41 16 12 C 0.07 2.21 3.56 86.30 0.31 2.52 16 13 C -0.09 -3.90 4.91 30.59 0.15 -3.75 16 14 C 0.01 0.58 4.28 29.85 0.13 0.71 16 15 C -0.62 -36.27 9.11 25.60 0.23 -36.04 16 16 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 17 C -0.04 -2.28 5.46 84.65 0.46 -1.81 16 18 N -0.94 -58.88 13.65 21.45 0.29 -58.58 16 19 Si 1.12 51.36 29.90 68.60 2.05 53.41 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H 0.05 1.14 7.40 -2.39 -0.02 1.12 16 24 H 0.09 1.08 8.01 -2.38 -0.02 1.06 16 25 H 0.06 1.16 6.24 -2.39 -0.01 1.14 16 26 H 0.12 0.99 7.99 -2.39 -0.02 0.98 16 27 H 0.07 1.49 7.22 -2.39 -0.02 1.47 16 28 H 0.17 0.67 7.80 -2.50 -0.02 0.65 16 29 H 0.16 1.33 8.14 -2.50 -0.02 1.31 16 30 H 0.16 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.12 2.76 8.14 -2.38 -0.02 2.74 16 32 H 0.08 1.85 5.63 -2.39 -0.01 1.83 16 33 H 0.11 1.15 6.27 -2.39 -0.01 1.13 16 34 H 0.05 1.42 7.19 -2.39 -0.02 1.40 16 35 H 0.07 2.44 6.48 -2.39 -0.02 2.42 16 36 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.06 2.26 6.31 -2.38 -0.02 2.24 16 38 H -0.01 -0.32 8.01 -2.39 -0.02 -0.34 16 39 H -0.01 -0.77 8.01 -2.39 -0.02 -0.79 16 40 H 0.26 16.19 7.22 -92.71 -0.67 15.52 16 Total: -1.00 -82.16 313.13 -0.72 -82.88 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 1.11 Total: 7.32 kcal Atomic # 6 Polarization: -60.96 SS G_CDS: 3.41 Total: -57.55 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -2.70 Total: -74.99 kcal Atomic # 8 Polarization: -61.16 SS G_CDS: -4.32 Total: -65.48 kcal Atomic # 14 Polarization: 51.36 SS G_CDS: 2.05 Total: 53.41 kcal Atomic # 16 Polarization: 54.68 SS G_CDS: -0.28 Total: 54.40 kcal Total: -82.16 -0.72 -82.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192088820.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.043 kcal (2) G-P(sol) polarization free energy of solvation -82.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds