Wall clock time and date at job start Mon Mar 30 2020 02:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46763 * 2 1 4 4 C 1.50697 * 109.46981 * 240.00766 * 2 1 3 5 5 O 1.21282 * 120.00173 * 334.06581 * 4 2 1 6 6 N 1.34773 * 120.00343 * 154.06372 * 4 2 1 7 7 C 1.47583 * 134.49993 * 174.76601 * 6 4 2 8 8 C 1.53940 * 86.11797 * 155.35843 * 7 6 4 9 9 O 1.42893 * 113.74560 * 269.15555 * 8 7 6 10 10 C 1.50703 * 113.73951 * 137.95272 * 8 7 6 11 11 H 1.08004 * 119.99850 * 1.93052 * 10 8 7 12 12 C 1.37879 * 120.00421 * 181.92669 * 10 8 7 13 13 N 1.31516 * 119.99704 * 0.02562 * 12 10 8 14 14 Si 1.86794 * 120.00387 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47160 * 270.00140 * 14 12 10 16 16 H 1.48504 * 109.47000 * 29.99469 * 14 12 10 17 17 H 1.48494 * 109.47495 * 149.99691 * 14 12 10 18 18 C 1.47821 * 134.45377 * 354.63993 * 6 4 2 19 19 C 1.50694 * 109.47288 * 120.00723 * 2 1 3 20 20 C 1.38232 * 120.00280 * 59.72722 * 19 2 1 21 21 C 1.38239 * 119.99959 * 179.79117 * 20 19 2 22 22 C 1.38231 * 120.00036 * 0.43872 * 21 20 19 23 23 C 1.38241 * 119.99799 * 359.81381 * 22 21 20 24 24 C 1.38228 * 120.00163 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.46642 * 184.71927 * 1 2 3 26 26 H 1.08998 * 109.47498 * 304.71719 * 1 2 3 27 27 H 1.09001 * 109.47332 * 64.72234 * 1 2 3 28 28 H 1.09001 * 113.76448 * 41.05820 * 7 6 4 29 29 H 1.08996 * 113.87053 * 269.68197 * 7 6 4 30 30 H 0.96709 * 114.00045 * 178.07281 * 9 8 7 31 31 H 0.96997 * 120.00383 * 180.02562 * 13 12 10 32 32 H 1.08999 * 113.76680 * 90.37732 * 18 6 4 33 33 H 1.09003 * 113.83260 * 318.91631 * 18 6 4 34 34 H 1.07998 * 119.99998 * 359.97438 * 20 19 2 35 35 H 1.07999 * 119.99704 * 180.27098 * 21 20 19 36 36 H 1.07997 * 119.99917 * 179.83798 * 22 21 20 37 37 H 1.08006 * 119.99621 * 179.97438 * 23 22 21 38 38 H 1.07997 * 120.00334 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2305 5 8 1.3439 -1.5513 -1.7688 6 7 3.2465 -0.4109 -1.7330 7 6 4.0762 -0.9538 -2.8262 8 6 4.7388 0.4349 -2.8723 9 8 4.1076 1.3439 -3.7763 10 6 6.2361 0.3875 -3.0368 11 1 6.7380 -0.5631 -3.1413 12 6 6.9652 1.5576 -3.0540 13 7 6.3540 2.7151 -2.9262 14 14 8.8210 1.4989 -3.2586 15 1 9.4637 1.4097 -1.9228 16 1 9.1925 0.3099 -4.0670 17 1 9.2822 2.7303 -3.9485 18 6 4.2807 0.5952 -1.4114 19 6 2.0324 -0.7105 1.2303 20 6 1.6939 -2.0323 1.4518 21 6 2.1583 -2.6853 2.5783 22 6 2.9537 -2.0139 3.4878 23 6 3.2880 -0.6905 3.2689 24 6 2.8272 -0.0388 2.1403 25 1 -0.3632 -1.0242 0.0846 26 1 -0.3634 0.5853 0.8447 27 1 -0.3634 0.4388 -0.9293 28 1 3.5114 -1.2012 -3.7250 29 1 4.7497 -1.7520 -2.5141 30 1 4.5027 2.2265 -3.7865 31 1 6.8668 3.5384 -2.9387 32 1 5.0140 0.2533 -0.6809 33 1 3.8789 1.5823 -1.1827 34 1 1.0690 -2.5557 0.7433 35 1 1.8974 -3.7193 2.7490 36 1 3.3144 -2.5233 4.3691 37 1 3.9092 -0.1657 3.9797 38 1 3.0880 0.9952 1.9695 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193138397.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:06 Heat of formation + Delta-G solvation = -32.438103 kcal Electronic energy + Delta-G solvation = -21373.497552 eV Core-core repulsion = 18181.784067 eV Total energy + Delta-G solvation = -3191.713485 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.01096 -38.84586 -37.34650 -33.92716 -33.81303 -32.22503 -30.83935 -29.30546 -28.63689 -25.70017 -25.24892 -23.83125 -22.50395 -21.51307 -19.73810 -18.16154 -17.44321 -16.78971 -16.44843 -15.54167 -15.30099 -14.98554 -14.59965 -14.36402 -14.12386 -13.59317 -13.25617 -13.12262 -12.91927 -12.56213 -12.43736 -12.02191 -11.91835 -11.77256 -11.57696 -11.40655 -11.08307 -11.02615 -10.90236 -10.76410 -10.52809 -10.28835 -9.62041 -9.24536 -8.84721 -8.78947 -8.60794 -8.36645 -7.81129 -6.39679 -4.49700 1.38282 1.47503 3.13939 3.19387 3.22336 3.25930 3.56918 3.87606 4.18494 4.80948 4.83178 4.87461 5.04433 5.05751 5.19815 5.28915 5.46085 5.56186 5.61181 5.65053 5.87242 5.97355 5.98408 6.08909 6.12584 6.20521 6.30858 6.38353 6.52118 6.54735 6.56593 6.61751 6.65948 6.75428 7.05680 7.10373 7.62560 7.82240 8.50864 8.53489 8.77925 9.21421 9.42090 10.67100 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.019898 B = 0.005358 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.830821 B = 5224.339720 C = 5954.539124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.069 4.069 3 H 0.095 0.905 4 C 0.537 3.463 5 O -0.563 6.563 6 N -0.629 5.629 7 C 0.111 3.889 8 C 0.239 3.761 9 O -0.572 6.572 10 C -0.536 4.536 11 H 0.071 0.929 12 C 0.073 3.927 13 N -0.899 5.899 14 Si 0.907 3.093 15 H -0.278 1.278 16 H -0.271 1.271 17 H -0.283 1.283 18 C 0.081 3.919 19 C -0.067 4.067 20 C -0.107 4.107 21 C -0.121 4.121 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.109 4.109 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.391 0.609 31 H 0.273 0.727 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.250 -3.288 11.047 12.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.090 4.090 3 H 0.113 0.887 4 C 0.326 3.674 5 O -0.443 6.443 6 N -0.362 5.362 7 C -0.011 4.011 8 C 0.197 3.803 9 O -0.384 6.384 10 C -0.575 4.575 11 H 0.089 0.911 12 C -0.130 4.130 13 N -0.539 5.539 14 Si 0.734 3.266 15 H -0.203 1.203 16 H -0.195 1.195 17 H -0.209 1.209 18 C -0.042 4.042 19 C -0.068 4.068 20 C -0.125 4.125 21 C -0.139 4.139 22 C -0.143 4.143 23 C -0.138 4.138 24 C -0.127 4.127 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.246 0.754 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.136 -4.074 10.714 13.001 hybrid contribution 1.464 0.616 0.186 1.599 sum -4.671 -3.458 10.900 12.353 Atomic orbital electron populations 1.21622 0.91970 1.02909 1.01909 1.20224 0.97760 0.99985 0.91012 0.88702 1.19933 0.80708 0.82564 0.84161 1.90611 1.56547 1.35461 1.61702 1.50232 1.15055 1.36102 1.34788 1.23427 0.90493 0.98372 0.88793 1.19842 0.90396 0.85505 0.84551 1.86066 1.61009 1.27587 1.63738 1.21507 0.90837 0.93774 1.51339 0.91110 1.25059 0.99746 0.95071 0.93123 1.69400 1.36742 0.97901 1.49815 0.86349 0.83880 0.77925 0.78486 1.20332 1.19542 1.20895 1.24318 0.86604 0.90366 1.02868 1.19496 0.97944 0.94408 0.94908 1.21128 0.99738 0.94218 0.97423 1.21107 0.98404 0.99737 0.94669 1.21127 0.98812 0.94915 0.99419 1.21102 1.00081 0.94974 0.97641 1.21104 0.97232 1.00150 0.94178 0.91579 0.92152 0.91923 0.91185 0.89743 0.75411 0.91715 0.90146 0.91444 0.85656 0.86212 0.86319 0.86048 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 8.54 37.16 0.32 -1.48 16 2 C -0.07 -1.11 2.72 -92.93 -0.25 -1.36 16 3 H 0.09 1.47 7.56 -51.93 -0.39 1.08 16 4 C 0.54 10.99 6.79 -10.99 -0.07 10.91 16 5 O -0.56 -12.88 16.93 5.56 0.09 -12.79 16 6 N -0.63 -13.47 3.61 -178.11 -0.64 -14.12 16 7 C 0.11 2.47 8.23 -2.97 -0.02 2.44 16 8 C 0.24 5.72 1.40 -90.85 -0.13 5.59 16 9 O -0.57 -14.68 13.48 -35.23 -0.48 -15.16 16 10 C -0.54 -13.42 8.61 -34.44 -0.30 -13.72 16 11 H 0.07 1.74 7.81 -52.48 -0.41 1.33 16 12 C 0.07 1.79 5.39 -17.82 -0.10 1.70 16 13 N -0.90 -22.50 11.20 55.43 0.62 -21.88 16 14 Si 0.91 19.37 29.54 -169.99 -5.02 14.34 16 15 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 16 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 18 C 0.08 1.74 7.84 -2.83 -0.02 1.72 16 19 C -0.07 -1.01 4.77 -104.63 -0.50 -1.51 16 20 C -0.11 -1.57 8.77 -39.58 -0.35 -1.92 16 21 C -0.12 -1.53 10.05 -39.58 -0.40 -1.92 16 22 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 23 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 24 C -0.11 -1.48 9.67 -39.58 -0.38 -1.86 16 25 H 0.07 0.95 7.10 -51.93 -0.37 0.58 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 29 H 0.08 1.74 8.09 -51.93 -0.42 1.32 16 30 H 0.39 10.06 6.60 45.56 0.30 10.36 16 31 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 32 H 0.08 1.69 8.09 -51.93 -0.42 1.27 16 33 H 0.07 1.43 8.06 -51.93 -0.42 1.01 16 34 H 0.13 1.91 7.53 -52.49 -0.40 1.51 16 35 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 38 H 0.12 1.54 7.95 -52.49 -0.42 1.12 16 LS Contribution 324.66 15.07 4.89 4.89 Total: -1.00 -28.29 324.66 -8.14 -36.44 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -4.61 Total: 13.39 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -3.00 Total: -5.11 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: -0.02 Total: -36.00 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.38 Total: -27.95 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.29 -8.14 -36.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193138397.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.998 kcal (2) G-P(sol) polarization free energy of solvation -28.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds