Wall clock time and date at job start Mon Mar 30 2020 02:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46763 * 2 1 4 4 C 1.50697 * 109.46981 * 240.00766 * 2 1 3 5 5 O 1.21282 * 120.00173 * 334.06581 * 4 2 1 6 6 N 1.34773 * 120.00343 * 154.06372 * 4 2 1 7 7 C 1.47583 * 134.49993 * 174.76601 * 6 4 2 8 8 C 1.53940 * 86.11797 * 155.35843 * 7 6 4 9 9 O 1.42893 * 113.74560 * 269.15555 * 8 7 6 10 10 C 1.50703 * 113.73951 * 137.95272 * 8 7 6 11 11 H 1.08004 * 119.99850 * 1.93052 * 10 8 7 12 12 C 1.37879 * 120.00421 * 181.92669 * 10 8 7 13 13 N 1.31516 * 119.99704 * 0.02562 * 12 10 8 14 14 Si 1.86794 * 120.00387 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47160 * 270.00140 * 14 12 10 16 16 H 1.48504 * 109.47000 * 29.99469 * 14 12 10 17 17 H 1.48494 * 109.47495 * 149.99691 * 14 12 10 18 18 C 1.47821 * 134.45377 * 354.63993 * 6 4 2 19 19 C 1.50694 * 109.47288 * 120.00723 * 2 1 3 20 20 C 1.38232 * 120.00280 * 59.72722 * 19 2 1 21 21 C 1.38239 * 119.99959 * 179.79117 * 20 19 2 22 22 C 1.38231 * 120.00036 * 0.43872 * 21 20 19 23 23 C 1.38241 * 119.99799 * 359.81381 * 22 21 20 24 24 C 1.38228 * 120.00163 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.46642 * 184.71927 * 1 2 3 26 26 H 1.08998 * 109.47498 * 304.71719 * 1 2 3 27 27 H 1.09001 * 109.47332 * 64.72234 * 1 2 3 28 28 H 1.09001 * 113.76448 * 41.05820 * 7 6 4 29 29 H 1.08996 * 113.87053 * 269.68197 * 7 6 4 30 30 H 0.96709 * 114.00045 * 178.07281 * 9 8 7 31 31 H 0.96997 * 120.00383 * 180.02562 * 13 12 10 32 32 H 1.08999 * 113.76680 * 90.37732 * 18 6 4 33 33 H 1.09003 * 113.83260 * 318.91631 * 18 6 4 34 34 H 1.07998 * 119.99998 * 359.97438 * 20 19 2 35 35 H 1.07999 * 119.99704 * 180.27098 * 21 20 19 36 36 H 1.07997 * 119.99917 * 179.83798 * 22 21 20 37 37 H 1.08006 * 119.99621 * 179.97438 * 23 22 21 38 38 H 1.07997 * 120.00334 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2305 5 8 1.3439 -1.5513 -1.7688 6 7 3.2465 -0.4109 -1.7330 7 6 4.0762 -0.9538 -2.8262 8 6 4.7388 0.4349 -2.8723 9 8 4.1076 1.3439 -3.7763 10 6 6.2361 0.3875 -3.0368 11 1 6.7380 -0.5631 -3.1413 12 6 6.9652 1.5576 -3.0540 13 7 6.3540 2.7151 -2.9262 14 14 8.8210 1.4989 -3.2586 15 1 9.4637 1.4097 -1.9228 16 1 9.1925 0.3099 -4.0670 17 1 9.2822 2.7303 -3.9485 18 6 4.2807 0.5952 -1.4114 19 6 2.0324 -0.7105 1.2303 20 6 1.6939 -2.0323 1.4518 21 6 2.1583 -2.6853 2.5783 22 6 2.9537 -2.0139 3.4878 23 6 3.2880 -0.6905 3.2689 24 6 2.8272 -0.0388 2.1403 25 1 -0.3632 -1.0242 0.0846 26 1 -0.3634 0.5853 0.8447 27 1 -0.3634 0.4388 -0.9293 28 1 3.5114 -1.2012 -3.7250 29 1 4.7497 -1.7520 -2.5141 30 1 4.5027 2.2265 -3.7865 31 1 6.8668 3.5384 -2.9387 32 1 5.0140 0.2533 -0.6809 33 1 3.8789 1.5823 -1.1827 34 1 1.0690 -2.5557 0.7433 35 1 1.8974 -3.7193 2.7490 36 1 3.3144 -2.5233 4.3691 37 1 3.9092 -0.1657 3.9797 38 1 3.0880 0.9952 1.9695 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193138397.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:06 Heat of formation + Delta-G solvation = -49.521318 kcal Electronic energy + Delta-G solvation = -21374.238335 eV Core-core repulsion = 18181.784067 eV Total energy + Delta-G solvation = -3192.454269 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.50158 -40.17294 -38.96901 -35.81493 -35.05387 -34.15629 -31.82142 -30.55971 -30.19663 -27.45319 -27.02522 -25.12216 -23.51145 -22.79061 -21.38380 -19.81631 -19.22299 -18.10816 -17.87851 -17.22929 -16.68694 -16.55924 -16.03345 -15.80721 -15.53617 -15.03379 -14.59186 -14.47758 -14.26796 -14.08609 -13.91052 -13.56715 -13.42908 -13.13611 -13.07029 -12.81987 -12.75604 -12.52123 -12.25762 -12.21198 -11.98103 -11.83055 -11.34613 -10.95132 -10.64992 -10.27639 -9.83787 -9.65505 -9.56312 -8.26734 -6.43673 0.36260 0.48274 1.46162 1.49911 1.58506 1.61454 1.95256 2.40821 2.84204 2.95966 3.44130 3.67637 3.77285 3.88220 4.11637 4.15138 4.19641 4.26259 4.30869 4.45716 4.57191 4.59764 4.65670 4.74551 4.80030 4.85390 4.88557 4.96157 5.08062 5.14399 5.18039 5.23350 5.55517 5.60164 5.66395 5.72110 5.92480 6.08970 6.61441 6.83648 7.12357 7.29903 7.43491 8.79440 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.019898 B = 0.005358 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.830821 B = 5224.339720 C = 5954.539124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.061 4.061 3 H 0.101 0.899 4 C 0.531 3.469 5 O -0.593 6.593 6 N -0.633 5.633 7 C 0.109 3.891 8 C 0.221 3.779 9 O -0.586 6.586 10 C -0.557 4.557 11 H 0.070 0.930 12 C 0.036 3.964 13 N -0.915 5.915 14 Si 0.967 3.033 15 H -0.271 1.271 16 H -0.272 1.272 17 H -0.282 1.282 18 C 0.099 3.901 19 C -0.085 4.085 20 C -0.126 4.126 21 C -0.125 4.125 22 C -0.121 4.121 23 C -0.120 4.120 24 C -0.118 4.118 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.099 0.901 30 H 0.388 0.612 31 H 0.276 0.724 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.140 0.860 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.258 -3.276 13.192 14.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.082 4.082 3 H 0.119 0.881 4 C 0.322 3.678 5 O -0.475 6.475 6 N -0.365 5.365 7 C -0.013 4.013 8 C 0.180 3.820 9 O -0.398 6.398 10 C -0.595 4.595 11 H 0.088 0.912 12 C -0.165 4.165 13 N -0.555 5.555 14 Si 0.792 3.208 15 H -0.196 1.196 16 H -0.197 1.197 17 H -0.208 1.208 18 C -0.023 4.023 19 C -0.085 4.085 20 C -0.144 4.144 21 C -0.143 4.143 22 C -0.139 4.139 23 C -0.138 4.138 24 C -0.136 4.136 25 H 0.077 0.923 26 H 0.107 0.893 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.117 0.883 30 H 0.242 0.758 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.127 0.873 35 H 0.158 0.842 36 H 0.168 0.832 37 H 0.166 0.834 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.155 -4.063 12.871 14.448 hybrid contribution 1.137 0.576 -0.473 1.360 sum -4.018 -3.487 12.398 13.491 Atomic orbital electron populations 1.21619 0.90713 1.02966 1.02671 1.20225 0.98803 0.99711 0.89489 0.88074 1.20772 0.79852 0.82266 0.84899 1.90585 1.57143 1.36925 1.62871 1.50287 1.15501 1.36119 1.34633 1.23423 0.90794 0.98131 0.89000 1.20096 0.90364 0.85919 0.85662 1.86053 1.61377 1.27669 1.64681 1.21700 0.91489 0.94078 1.52250 0.91226 1.25714 1.03451 0.94706 0.92674 1.69458 1.38018 0.98286 1.49736 0.85415 0.79260 0.77624 0.78502 1.19605 1.19697 1.20772 1.24070 0.86505 0.90438 1.01334 1.19449 0.99424 0.94770 0.94897 1.21142 1.00578 0.94406 0.98312 1.21393 0.98102 1.00784 0.93989 1.21527 0.97586 0.94844 0.99894 1.21470 0.99655 0.95322 0.97366 1.21292 0.97046 1.00742 0.94562 0.92264 0.89315 0.92764 0.92437 0.88316 0.75810 0.91411 0.89447 0.91309 0.87283 0.84184 0.83217 0.83404 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.42 8.54 71.98 0.61 -2.81 16 2 C -0.06 -1.96 2.72 -12.29 -0.03 -1.99 16 3 H 0.10 3.06 7.56 -2.39 -0.02 3.05 16 4 C 0.53 21.94 6.79 87.66 0.59 22.54 16 5 O -0.59 -27.78 16.93 -3.04 -0.05 -27.83 16 6 N -0.63 -27.26 3.61 -839.62 -3.03 -30.30 16 7 C 0.11 4.90 8.23 86.48 0.71 5.61 16 8 C 0.22 10.64 1.40 -10.88 -0.02 10.63 16 9 O -0.59 -30.58 13.48 -148.98 -2.01 -32.59 16 10 C -0.56 -27.77 8.61 25.60 0.22 -27.55 16 11 H 0.07 3.40 7.81 -2.91 -0.02 3.37 16 12 C 0.04 1.73 5.39 84.66 0.46 2.18 16 13 N -0.91 -45.38 11.20 21.45 0.24 -45.14 16 14 Si 0.97 38.97 29.54 68.60 2.03 40.99 16 15 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 16 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 17 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 18 C 0.10 4.23 7.84 86.44 0.68 4.91 16 19 C -0.08 -2.48 4.77 -19.87 -0.09 -2.57 16 20 C -0.13 -3.62 8.77 22.27 0.20 -3.43 16 21 C -0.12 -2.88 10.05 22.27 0.22 -2.66 16 22 C -0.12 -2.42 10.05 22.27 0.22 -2.19 16 23 C -0.12 -2.54 10.05 22.27 0.22 -2.31 16 24 C -0.12 -2.99 9.67 22.27 0.22 -2.77 16 25 H 0.06 1.72 7.10 -2.39 -0.02 1.71 16 26 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.10 4.08 8.09 -2.39 -0.02 4.07 16 30 H 0.39 20.28 6.60 -74.05 -0.49 19.79 16 31 H 0.28 12.95 8.31 -92.71 -0.77 12.18 16 32 H 0.09 3.59 8.09 -2.39 -0.02 3.57 16 33 H 0.07 2.89 8.06 -2.39 -0.02 2.87 16 34 H 0.11 3.41 7.53 -2.91 -0.02 3.38 16 35 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 36 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 38 H 0.13 3.01 7.95 -2.91 -0.02 2.99 16 Total: -1.00 -59.94 324.66 1.96 -57.98 By element: Atomic # 1 Polarization: 38.73 SS G_CDS: 0.57 Total: 39.30 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 4.21 Total: -2.42 kcal Atomic # 7 Polarization: -72.65 SS G_CDS: -2.79 Total: -75.44 kcal Atomic # 8 Polarization: -58.36 SS G_CDS: -2.06 Total: -60.42 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 40.99 kcal Total: -59.94 1.96 -57.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193138397.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.464 kcal (2) G-P(sol) polarization free energy of solvation -59.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds