Wall clock time and date at job start Mon Mar 30 2020 02:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46860 * 2 1 4 4 N 1.46496 * 109.47602 * 239.99443 * 2 1 3 5 5 C 1.34773 * 119.99950 * 84.99840 * 4 2 1 6 6 O 1.21592 * 120.00358 * 0.02562 * 5 4 2 7 7 C 1.47536 * 120.00250 * 180.02562 * 5 4 2 8 8 C 1.39673 * 120.19308 * 0.27711 * 7 5 4 9 9 C 1.37829 * 119.91662 * 180.30027 * 8 7 5 10 10 C 1.38573 * 120.32162 * 359.69830 * 9 8 7 11 11 C 1.38023 * 120.40656 * 0.02562 * 10 9 8 12 12 C 1.38834 * 120.06654 * 0.02562 * 11 10 9 13 13 O 1.35526 * 120.15695 * 179.97438 * 12 11 10 14 14 C 1.34813 * 117.00333 * 5.59555 * 13 12 11 15 15 H 1.08003 * 119.99735 * 354.93364 * 14 13 12 16 16 C 1.38696 * 119.99881 * 174.93689 * 14 13 12 17 17 N 1.31516 * 120.00523 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99750 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47231 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47388 * 119.99632 * 18 16 14 21 21 H 1.48502 * 109.46831 * 239.99989 * 18 16 14 22 22 C 1.53004 * 109.46570 * 119.99308 * 2 1 3 23 23 C 1.52999 * 117.50098 * 8.62807 * 22 2 1 24 24 C 1.52994 * 117.50085 * 299.99906 * 22 2 1 25 25 H 1.08999 * 109.46625 * 60.00512 * 1 2 3 26 26 H 1.08998 * 109.46860 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47292 * 300.00439 * 1 2 3 28 28 H 0.96999 * 120.00188 * 265.00769 * 4 2 1 29 29 H 1.07997 * 120.04439 * 0.02562 * 8 7 5 30 30 H 1.07997 * 119.83927 * 179.72258 * 9 8 7 31 31 H 1.08006 * 119.79576 * 180.02562 * 10 9 8 32 32 H 1.07998 * 119.96858 * 180.02562 * 11 10 9 33 33 H 0.97001 * 120.00147 * 180.02562 * 17 16 14 34 34 H 1.09006 * 115.54678 * 154.32928 * 22 2 1 35 35 H 1.08995 * 117.49834 * 359.97438 * 23 22 2 36 36 H 1.08998 * 117.49739 * 145.01865 * 23 22 2 37 37 H 1.08998 * 117.50246 * 214.98052 * 24 22 2 38 38 H 1.08998 * 117.50142 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6907 -1.1960 5 6 2.1472 -0.0185 -2.3570 6 8 1.8584 1.1614 -2.4117 7 6 2.6386 -0.7141 -3.5617 8 6 2.9660 -2.0707 -3.5050 9 6 3.4304 -2.7135 -4.6324 10 6 3.5686 -2.0218 -5.8252 11 6 3.2435 -0.6823 -5.8976 12 6 2.7752 -0.0183 -4.7719 13 8 2.4560 1.2970 -4.8409 14 6 2.5046 1.8757 -6.0575 15 1 2.8667 1.3163 -6.9075 16 6 2.0897 3.1894 -6.2176 17 7 1.6483 3.8705 -5.1828 18 14 2.1565 3.9910 -7.9036 19 1 2.6873 3.0192 -8.8932 20 1 0.7905 4.4118 -8.3062 21 1 3.0455 5.1794 -7.8518 22 6 2.0399 -0.7211 1.2494 23 6 1.0103 -1.4540 2.1118 24 6 1.6356 -0.1493 2.6096 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 2.2491 -1.6318 -1.1524 29 1 2.8597 -2.6144 -2.5779 30 1 3.6875 -3.7614 -4.5860 31 1 3.9329 -2.5340 -6.7035 32 1 3.3535 -0.1503 -6.8310 33 1 1.3578 4.7892 -5.2949 34 1 3.0323 -1.1640 1.1645 35 1 -0.0304 -1.4220 1.7893 36 1 1.3252 -2.3792 2.5943 37 1 2.3617 -0.2162 3.4197 38 1 1.0060 0.7405 2.6145 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194070985.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:09 Heat of formation + Delta-G solvation = -8.795765 kcal Electronic energy + Delta-G solvation = -20955.303242 eV Core-core repulsion = 17764.614966 eV Total energy + Delta-G solvation = -3190.688276 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.70709 -38.67556 -37.32073 -36.29992 -33.69835 -32.32088 -30.92549 -29.08691 -28.85364 -25.42517 -24.81169 -22.86509 -22.44732 -21.41845 -19.78333 -19.65016 -18.00489 -17.51751 -16.36824 -16.05761 -15.11156 -14.74248 -14.54249 -14.33234 -14.06636 -13.94020 -13.77962 -13.32242 -12.85087 -12.64272 -12.46726 -11.90721 -11.79984 -11.70281 -11.39909 -11.28513 -11.10163 -10.90672 -10.90137 -10.73880 -10.51968 -10.43075 -10.07595 -9.53623 -8.87092 -8.78757 -8.50030 -8.24608 -7.28961 -6.42918 -4.02799 1.74286 2.33740 3.12714 3.13546 3.19274 3.52411 3.78447 3.91349 3.94845 4.62848 4.69432 4.86355 4.94961 5.08761 5.13330 5.19725 5.42631 5.50285 5.52420 5.57857 5.67340 5.76069 5.76582 5.89763 6.03162 6.04814 6.08277 6.14378 6.31849 6.47847 6.58574 6.71681 6.93568 7.06654 7.08861 7.26069 7.31424 7.71475 7.94151 8.20117 8.96937 9.15725 9.69768 10.71033 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018481 B = 0.005131 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.737842 B = 5456.166574 C = 6789.076117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.176 3.824 3 H 0.089 0.911 4 N -0.737 5.737 5 C 0.554 3.446 6 O -0.501 6.501 7 C -0.227 4.227 8 C -0.038 4.038 9 C -0.231 4.231 10 C -0.051 4.051 11 C -0.238 4.238 12 C 0.189 3.811 13 O -0.124 6.124 14 C -0.404 4.404 15 H 0.094 0.906 16 C 0.044 3.956 17 N -0.833 5.833 18 Si 0.941 3.059 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.162 4.162 23 C -0.184 4.184 24 C -0.173 4.173 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.391 0.609 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.270 0.730 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.521 -11.013 8.813 14.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.072 3.928 3 H 0.107 0.893 4 N -0.392 5.392 5 C 0.344 3.656 6 O -0.376 6.376 7 C -0.231 4.231 8 C -0.057 4.057 9 C -0.250 4.250 10 C -0.070 4.070 11 C -0.258 4.258 12 C 0.129 3.871 13 O -0.022 6.022 14 C -0.479 4.479 15 H 0.112 0.888 16 C -0.163 4.163 17 N -0.464 5.464 18 Si 0.765 3.235 19 H -0.190 1.190 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.180 4.180 23 C -0.221 4.221 24 C -0.210 4.210 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.226 0.774 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.149 0.851 33 H 0.081 0.919 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.129 -9.645 8.985 13.182 hybrid contribution 0.240 -0.243 -0.857 0.922 sum 0.369 -9.888 8.129 12.805 Atomic orbital electron populations 1.22289 0.95850 1.01713 1.02452 1.20228 0.93426 0.96920 0.82275 0.89256 1.45928 1.70326 1.13545 1.09451 1.18239 0.78012 0.86798 0.82561 1.90942 1.47806 1.14756 1.84048 1.18876 1.17091 0.94143 0.93031 1.20767 0.95227 0.92263 0.97466 1.20460 1.11335 0.99474 0.93763 1.20893 0.95535 0.93682 0.96884 1.21157 1.09503 0.95536 0.99556 1.19288 0.90678 0.85122 0.91967 1.84178 1.70718 1.15697 1.31634 1.21546 1.45165 0.96554 0.84684 0.88843 1.25381 0.95820 0.95653 0.99467 1.70139 1.36628 1.10074 1.29583 0.85667 0.78420 0.79304 0.80126 1.18973 1.20023 1.20029 1.22580 0.99666 1.04123 0.91671 1.23170 0.99263 0.95845 1.03810 1.22930 1.03752 0.97774 0.96560 0.91568 0.92428 0.92202 0.77432 0.87045 0.87314 0.87221 0.85097 0.91940 0.87437 0.87915 0.89105 0.88821 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 8.08 37.16 0.30 -2.01 16 2 C 0.18 2.62 2.97 -67.93 -0.20 2.41 16 3 H 0.09 1.57 7.58 -51.93 -0.39 1.18 16 4 N -0.74 -12.12 5.03 -54.85 -0.28 -12.39 16 5 C 0.55 12.30 7.73 -12.47 -0.10 12.21 16 6 O -0.50 -13.80 14.83 -16.57 -0.25 -14.05 16 7 C -0.23 -4.97 5.89 -104.81 -0.62 -5.59 16 8 C -0.04 -0.66 9.54 -39.20 -0.37 -1.04 16 9 C -0.23 -3.82 10.03 -39.61 -0.40 -4.22 16 10 C -0.05 -0.92 10.03 -39.54 -0.40 -1.31 16 11 C -0.24 -5.17 9.16 -39.44 -0.36 -5.53 16 12 C 0.19 4.74 6.66 -38.60 -0.26 4.49 16 13 O -0.12 -3.69 7.84 -21.07 -0.17 -3.86 16 14 C -0.40 -11.51 9.49 30.90 0.29 -11.22 16 15 H 0.09 2.42 5.21 -52.48 -0.27 2.15 16 16 C 0.04 1.25 5.49 -17.52 -0.10 1.15 16 17 N -0.83 -25.28 13.67 55.48 0.76 -24.52 16 18 Si 0.94 20.66 29.55 -169.99 -5.02 15.63 16 19 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 22 C -0.16 -1.81 5.87 -90.62 -0.53 -2.34 16 23 C -0.18 -1.71 9.57 -26.73 -0.26 -1.96 16 24 C -0.17 -1.67 9.90 -26.73 -0.26 -1.93 16 25 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 26 H 0.06 0.71 6.97 -51.93 -0.36 0.35 16 27 H 0.06 0.72 7.07 -51.93 -0.37 0.35 16 28 H 0.39 5.21 6.63 -40.82 -0.27 4.94 16 29 H 0.11 1.49 6.40 -52.49 -0.34 1.15 16 30 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 32 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.10 0.95 5.85 -51.93 -0.30 0.65 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.10 0.94 7.61 -51.93 -0.39 0.55 16 LS Contribution 318.58 15.07 4.80 4.80 Total: -1.00 -34.06 318.58 -8.08 -42.14 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -4.67 Total: 9.15 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -3.26 Total: -16.90 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.48 Total: -36.91 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.41 Total: -17.91 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.06 -8.08 -42.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194070985.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.341 kcal (2) G-P(sol) polarization free energy of solvation -34.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds