Wall clock time and date at job start Mon Mar 30 2020 02:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46860 * 2 1 4 4 N 1.46496 * 109.47602 * 239.99443 * 2 1 3 5 5 C 1.34773 * 119.99950 * 84.99840 * 4 2 1 6 6 O 1.21592 * 120.00358 * 0.02562 * 5 4 2 7 7 C 1.47536 * 120.00250 * 180.02562 * 5 4 2 8 8 C 1.39673 * 120.19308 * 0.27711 * 7 5 4 9 9 C 1.37829 * 119.91662 * 180.30027 * 8 7 5 10 10 C 1.38573 * 120.32162 * 359.69830 * 9 8 7 11 11 C 1.38023 * 120.40656 * 0.02562 * 10 9 8 12 12 C 1.38834 * 120.06654 * 0.02562 * 11 10 9 13 13 O 1.35526 * 120.15695 * 179.97438 * 12 11 10 14 14 C 1.34813 * 117.00333 * 5.59555 * 13 12 11 15 15 H 1.08003 * 119.99735 * 354.93364 * 14 13 12 16 16 C 1.38696 * 119.99881 * 174.93689 * 14 13 12 17 17 N 1.31516 * 120.00523 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99750 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47231 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47388 * 119.99632 * 18 16 14 21 21 H 1.48502 * 109.46831 * 239.99989 * 18 16 14 22 22 C 1.53004 * 109.46570 * 119.99308 * 2 1 3 23 23 C 1.52999 * 117.50098 * 8.62807 * 22 2 1 24 24 C 1.52994 * 117.50085 * 299.99906 * 22 2 1 25 25 H 1.08999 * 109.46625 * 60.00512 * 1 2 3 26 26 H 1.08998 * 109.46860 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47292 * 300.00439 * 1 2 3 28 28 H 0.96999 * 120.00188 * 265.00769 * 4 2 1 29 29 H 1.07997 * 120.04439 * 0.02562 * 8 7 5 30 30 H 1.07997 * 119.83927 * 179.72258 * 9 8 7 31 31 H 1.08006 * 119.79576 * 180.02562 * 10 9 8 32 32 H 1.07998 * 119.96858 * 180.02562 * 11 10 9 33 33 H 0.97001 * 120.00147 * 180.02562 * 17 16 14 34 34 H 1.09006 * 115.54678 * 154.32928 * 22 2 1 35 35 H 1.08995 * 117.49834 * 359.97438 * 23 22 2 36 36 H 1.08998 * 117.49739 * 145.01865 * 23 22 2 37 37 H 1.08998 * 117.50246 * 214.98052 * 24 22 2 38 38 H 1.08998 * 117.50142 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6907 -1.1960 5 6 2.1472 -0.0185 -2.3570 6 8 1.8584 1.1614 -2.4117 7 6 2.6386 -0.7141 -3.5617 8 6 2.9660 -2.0707 -3.5050 9 6 3.4304 -2.7135 -4.6324 10 6 3.5686 -2.0218 -5.8252 11 6 3.2435 -0.6823 -5.8976 12 6 2.7752 -0.0183 -4.7719 13 8 2.4560 1.2970 -4.8409 14 6 2.5046 1.8757 -6.0575 15 1 2.8667 1.3163 -6.9075 16 6 2.0897 3.1894 -6.2176 17 7 1.6483 3.8705 -5.1828 18 14 2.1565 3.9910 -7.9036 19 1 2.6873 3.0192 -8.8932 20 1 0.7905 4.4118 -8.3062 21 1 3.0455 5.1794 -7.8518 22 6 2.0399 -0.7211 1.2494 23 6 1.0103 -1.4540 2.1118 24 6 1.6356 -0.1493 2.6096 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 2.2491 -1.6318 -1.1524 29 1 2.8597 -2.6144 -2.5779 30 1 3.6875 -3.7614 -4.5860 31 1 3.9329 -2.5340 -6.7035 32 1 3.3535 -0.1503 -6.8310 33 1 1.3578 4.7892 -5.2949 34 1 3.0323 -1.1640 1.1645 35 1 -0.0304 -1.4220 1.7893 36 1 1.3252 -2.3792 2.5943 37 1 2.3617 -0.2162 3.4197 38 1 1.0060 0.7405 2.6145 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194070985.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:09 Heat of formation + Delta-G solvation = -31.761917 kcal Electronic energy + Delta-G solvation = -20956.299130 eV Core-core repulsion = 17764.614966 eV Total energy + Delta-G solvation = -3191.684163 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.34751 -40.15154 -38.69097 -37.99947 -35.16684 -34.32171 -32.43750 -30.58865 -30.37623 -27.39826 -26.07573 -24.33867 -23.25526 -23.05359 -21.37570 -20.85278 -19.82886 -19.12756 -17.89767 -17.44749 -16.54771 -16.25016 -16.13882 -15.95454 -15.58638 -15.35434 -15.34672 -14.89622 -14.45675 -14.23047 -13.99674 -13.55128 -13.11484 -13.00766 -12.88183 -12.68307 -12.54292 -12.34807 -12.19813 -12.09719 -11.93821 -11.46485 -11.32181 -11.01081 -10.84835 -10.54571 -10.06394 -9.77100 -9.03424 -8.44973 -6.16061 0.13226 0.72995 1.31834 1.42685 1.51920 2.11510 2.15431 2.23512 2.87777 2.96321 3.23085 3.47247 3.70174 3.92369 4.03364 4.08317 4.11442 4.19165 4.27707 4.35213 4.49393 4.53386 4.65870 4.77531 4.86489 4.94307 4.99785 5.03960 5.08272 5.15475 5.17294 5.30761 5.34655 5.48945 5.61655 5.65729 5.69914 5.96267 6.17626 6.74856 6.94443 7.52399 7.80771 8.75951 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018481 B = 0.005131 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.737842 B = 5456.166574 C = 6789.076117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.172 3.828 3 H 0.049 0.951 4 N -0.711 5.711 5 C 0.547 3.453 6 O -0.569 6.569 7 C -0.246 4.246 8 C -0.029 4.029 9 C -0.200 4.200 10 C -0.040 4.040 11 C -0.258 4.258 12 C 0.148 3.852 13 O -0.190 6.190 14 C -0.428 4.428 15 H 0.107 0.893 16 C -0.023 4.023 17 N -0.906 5.906 18 Si 1.023 2.977 19 H -0.245 1.245 20 H -0.269 1.269 21 H -0.268 1.268 22 C -0.173 4.173 23 C -0.164 4.164 24 C -0.172 4.172 25 H 0.021 0.979 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.411 0.589 29 H 0.161 0.839 30 H 0.165 0.835 31 H 0.154 0.846 32 H 0.123 0.877 33 H 0.270 0.730 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.542 -15.904 9.294 18.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.068 3.932 3 H 0.067 0.933 4 N -0.366 5.366 5 C 0.337 3.663 6 O -0.449 6.449 7 C -0.250 4.250 8 C -0.048 4.048 9 C -0.219 4.219 10 C -0.059 4.059 11 C -0.277 4.277 12 C 0.092 3.908 13 O -0.092 6.092 14 C -0.503 4.503 15 H 0.124 0.876 16 C -0.222 4.222 17 N -0.542 5.542 18 Si 0.841 3.159 19 H -0.168 1.168 20 H -0.194 1.194 21 H -0.193 1.193 22 C -0.192 4.192 23 C -0.200 4.200 24 C -0.209 4.209 25 H 0.040 0.960 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.249 0.751 29 H 0.178 0.822 30 H 0.182 0.818 31 H 0.172 0.828 32 H 0.140 0.860 33 H 0.079 0.921 34 H 0.136 0.864 35 H 0.122 0.878 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.178 -14.668 9.502 17.516 hybrid contribution 0.014 0.806 -0.821 1.151 sum 1.191 -13.861 8.681 16.399 Atomic orbital electron populations 1.22230 0.95173 1.02853 1.01306 1.20302 0.93985 0.95559 0.83360 0.93307 1.45690 1.68435 1.14168 1.08271 1.18564 0.77378 0.86178 0.84161 1.90923 1.50875 1.17828 1.85235 1.19335 1.17407 0.96256 0.92027 1.21314 0.93279 0.89987 1.00207 1.21183 1.06866 1.01689 0.92113 1.21437 0.93289 0.91793 0.99336 1.21297 1.10567 0.97544 0.98314 1.20110 0.91449 0.84717 0.94479 1.84184 1.74615 1.18201 1.32212 1.22089 1.45606 0.97353 0.85299 0.87578 1.26771 0.95133 0.96049 1.04232 1.70334 1.40473 1.10631 1.32790 0.84495 0.78692 0.78268 0.74419 1.16796 1.19381 1.19348 1.22387 1.00839 1.05639 0.90298 1.23264 0.98597 0.96377 1.01784 1.23052 1.04014 0.98150 0.95715 0.96014 0.89951 0.90111 0.75096 0.82196 0.81755 0.82834 0.85970 0.92059 0.86427 0.87766 0.86788 0.87099 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.47 8.08 71.98 0.58 -3.89 16 2 C 0.17 5.20 2.97 44.99 0.13 5.33 16 3 H 0.05 1.87 7.58 -2.39 -0.02 1.86 16 4 N -0.71 -23.18 5.03 -445.70 -2.24 -25.42 16 5 C 0.55 25.48 7.73 86.70 0.67 26.15 16 6 O -0.57 -34.42 14.83 16.89 0.25 -34.17 16 7 C -0.25 -10.87 5.89 -19.99 -0.12 -10.99 16 8 C -0.03 -0.90 9.54 22.52 0.21 -0.68 16 9 C -0.20 -5.37 10.03 22.25 0.22 -5.15 16 10 C -0.04 -1.27 10.03 22.30 0.22 -1.05 16 11 C -0.26 -11.19 9.16 22.36 0.20 -10.99 16 12 C 0.15 7.75 6.66 22.90 0.15 7.90 16 13 O -0.19 -12.28 7.84 0.78 0.01 -12.28 16 14 C -0.43 -26.28 9.49 67.93 0.64 -25.64 16 15 H 0.11 5.85 5.21 -2.91 -0.02 5.84 16 16 C -0.02 -1.38 5.49 84.85 0.47 -0.91 16 17 N -0.91 -60.17 13.67 21.62 0.30 -59.87 16 18 Si 1.02 44.84 29.55 68.60 2.03 46.87 16 19 H -0.24 -9.69 7.11 99.48 0.71 -8.98 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 22 C -0.17 -3.51 5.87 -10.79 -0.06 -3.57 16 23 C -0.16 -2.42 9.57 30.60 0.29 -2.13 16 24 C -0.17 -2.91 9.90 30.59 0.30 -2.61 16 25 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.08 1.90 6.97 -2.39 -0.02 1.88 16 27 H 0.08 1.92 7.07 -2.39 -0.02 1.90 16 28 H 0.41 9.75 6.63 -92.71 -0.61 9.13 16 29 H 0.16 3.27 6.40 -2.91 -0.02 3.25 16 30 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 31 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 32 H 0.12 5.39 5.64 -2.91 -0.02 5.37 16 33 H 0.27 16.38 8.31 -92.71 -0.77 15.61 16 34 H 0.12 2.17 8.14 -2.38 -0.02 2.15 16 35 H 0.10 1.55 5.85 -2.39 -0.01 1.53 16 36 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.09 1.66 7.61 -2.39 -0.02 1.64 16 Total: -1.00 -88.05 318.58 4.74 -83.30 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: 0.48 Total: 29.81 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 3.93 Total: -28.23 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -1.95 Total: -85.29 kcal Atomic # 8 Polarization: -46.70 SS G_CDS: 0.26 Total: -46.45 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -88.05 4.74 -83.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194070985.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.541 kcal (2) G-P(sol) polarization free energy of solvation -88.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds