Wall clock time and date at job start Mon Mar 30 2020 01:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47154 * 2 1 4 4 O 1.42897 * 109.47123 * 180.02562 * 3 2 1 5 5 C 1.35968 * 116.99916 * 180.02562 * 4 3 2 6 6 C 1.38745 * 120.14527 * 0.02562 * 5 4 3 7 7 C 1.37907 * 120.31300 * 179.97438 * 6 5 4 8 8 C 1.39358 * 120.20539 * 359.97424 * 7 6 5 9 9 C 1.38889 * 119.03976 * 0.04824 * 8 7 6 10 10 C 1.37664 * 120.85945 * 359.95576 * 9 8 7 11 11 C 1.51149 * 106.35491 * 180.02562 * 9 8 7 12 12 H 1.08999 * 110.50029 * 118.63746 * 11 9 8 13 13 C 1.50699 * 110.50280 * 241.18663 * 11 9 8 14 14 H 1.08005 * 120.00021 * 0.02562 * 13 11 9 15 15 C 1.37875 * 119.99888 * 179.97438 * 13 11 9 16 16 N 1.31516 * 120.00101 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 120.00155 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46886 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46993 * 120.00240 * 17 15 13 20 20 H 1.48499 * 109.47086 * 240.00395 * 17 15 13 21 21 C 1.51376 * 104.10379 * 359.97438 * 11 9 8 22 22 O 1.21297 * 126.43748 * 179.97438 * 21 11 9 23 23 N 1.34369 * 107.13148 * 359.97438 * 21 11 9 24 24 C 1.46496 * 123.89550 * 180.02562 * 23 21 11 25 25 H 1.09004 * 109.46894 * 60.00222 * 1 2 3 26 26 H 1.08994 * 109.47342 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47569 * 300.00128 * 1 2 3 28 28 H 1.08998 * 109.47067 * 239.99841 * 2 1 3 29 29 H 1.08996 * 109.47048 * 120.00061 * 2 1 3 30 30 H 1.09001 * 109.46987 * 59.99516 * 3 2 1 31 31 H 1.08996 * 109.47193 * 299.99972 * 3 2 1 32 32 H 1.07995 * 119.84243 * 0.02562 * 6 5 4 33 33 H 1.07997 * 119.89712 * 179.97438 * 7 6 5 34 34 H 1.07992 * 120.06791 * 180.30109 * 10 9 8 35 35 H 0.96996 * 120.00411 * 179.97438 * 16 15 13 36 36 H 1.08997 * 109.47743 * 270.03731 * 24 23 21 37 37 H 1.09000 * 109.47126 * 30.03981 * 24 23 21 38 38 H 1.09001 * 109.47693 * 150.03652 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0863 2.6540 -0.0001 6 6 3.3335 3.8195 0.0014 7 6 3.9560 5.0501 0.0024 8 6 5.3472 5.1321 0.0024 9 6 6.0917 3.9596 0.0004 10 6 5.4725 2.7300 -0.0007 11 6 7.5442 4.3777 0.0016 12 1 8.0461 4.0114 0.8971 13 6 8.2399 3.8723 -1.2359 14 1 7.6910 3.2981 -1.9677 15 6 9.5770 4.1440 -1.4346 16 7 10.2453 4.8437 -0.5439 17 14 10.4393 3.5182 -2.9690 18 1 9.4730 2.7635 -3.8069 19 1 10.9710 4.6691 -3.7422 20 1 11.5592 2.6248 -2.5778 21 6 7.4925 5.8906 0.0038 22 8 8.4432 6.6439 0.0058 23 7 6.1957 6.2424 0.0033 24 6 5.7256 7.6298 0.0044 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 2.2551 3.7627 0.0027 33 1 3.3635 5.9530 0.0032 34 1 6.0639 1.8264 0.0026 35 1 11.1860 5.0345 -0.6834 36 1 5.6088 7.9731 1.0323 37 1 6.4519 8.2600 -0.5088 38 1 4.7661 7.6889 -0.5095 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218779407.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:26 Heat of formation + Delta-G solvation = -37.904597 kcal Electronic energy + Delta-G solvation = -20966.425941 eV Core-core repulsion = 17774.475412 eV Total energy + Delta-G solvation = -3191.950530 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.58009 -39.10210 -36.72659 -34.62925 -33.71582 -33.33468 -31.46117 -29.40770 -27.34378 -26.71233 -26.12027 -23.63026 -22.11931 -21.51457 -20.39655 -19.32443 -17.46398 -16.86271 -16.20963 -16.05822 -15.64668 -15.07196 -14.78652 -14.47333 -14.07648 -13.66737 -13.57239 -12.88719 -12.74891 -12.65410 -12.49542 -12.24051 -12.15616 -12.10926 -11.80525 -11.62054 -11.37517 -11.20736 -10.90400 -10.80643 -10.63026 -10.38044 -9.73381 -9.56484 -9.15016 -8.70485 -8.40569 -8.21095 -6.83547 -6.03720 -4.15385 1.86879 1.93068 3.29438 3.37462 3.39654 3.41682 3.68760 3.82006 4.40864 4.44262 4.75668 4.76951 5.06805 5.10755 5.19830 5.25503 5.27581 5.37914 5.44018 5.48232 5.73786 5.77063 5.79045 5.81976 5.87302 5.90497 5.97653 6.03251 6.15863 6.43761 6.61812 6.77179 6.97350 7.05263 7.28384 7.56756 7.78168 7.83129 7.99377 8.13103 8.83308 9.38250 9.47959 10.99985 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.019001 B = 0.005099 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.224593 B = 5489.776522 C = 6677.187688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.061 3.939 4 O -0.318 6.318 5 C 0.092 3.908 6 C -0.190 4.190 7 C -0.120 4.120 8 C 0.117 3.883 9 C -0.064 4.064 10 C -0.097 4.097 11 C 0.060 3.940 12 H 0.080 0.920 13 C -0.524 4.524 14 H 0.069 0.931 15 C 0.069 3.931 16 N -0.841 5.841 17 Si 0.898 3.102 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.281 1.281 21 C 0.524 3.476 22 O -0.475 6.475 23 N -0.572 5.572 24 C 0.084 3.916 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.133 0.867 35 H 0.264 0.736 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.513 -4.051 1.933 18.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.014 4.014 4 O -0.232 6.232 5 C 0.047 3.953 6 C -0.209 4.209 7 C -0.141 4.141 8 C 0.020 3.980 9 C -0.067 4.067 10 C -0.116 4.116 11 C 0.039 3.961 12 H 0.097 0.903 13 C -0.562 4.562 14 H 0.087 0.913 15 C -0.139 4.139 16 N -0.474 5.474 17 Si 0.725 3.275 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.207 1.207 21 C 0.315 3.685 22 O -0.345 6.345 23 N -0.299 5.299 24 C -0.059 4.059 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.151 0.849 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.596 -3.554 1.995 17.089 hybrid contribution 0.126 0.199 -0.883 0.914 sum -16.471 -3.356 1.111 16.846 Atomic orbital electron populations 1.21687 0.94613 1.02247 1.02086 1.21476 0.95690 0.95355 1.03672 1.22735 0.79545 0.98141 1.01027 1.86020 1.20263 1.27275 1.89665 1.18655 0.91881 0.83611 1.01185 1.20634 0.98971 0.91547 1.09745 1.19915 0.90989 0.97250 1.05989 1.18191 0.90953 0.87432 1.01393 1.20273 0.97678 0.90961 0.97741 1.19426 0.90417 0.97624 1.04133 1.18397 0.87798 0.88630 1.01241 0.90289 1.20581 0.94095 1.36328 1.05172 0.91254 1.25103 0.97479 0.94495 0.96845 1.70090 1.09075 1.34552 1.33700 0.86437 0.79600 0.78612 0.82876 1.19474 1.20926 1.20664 1.22094 0.79860 0.93149 0.73444 1.90665 1.37705 1.59302 1.46795 1.46376 1.07549 1.04335 1.71635 1.21560 1.00093 0.82979 1.01268 0.92463 0.91963 0.92472 0.90876 0.90906 0.92468 0.92453 0.86002 0.86629 0.84925 0.92634 0.93019 0.90771 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.12 -1.11 6.30 -26.73 -0.17 -1.28 16 3 C 0.06 0.67 4.74 37.16 0.18 0.85 16 4 O -0.32 -4.85 10.14 -19.64 -0.20 -5.05 16 5 C 0.09 1.56 6.69 -39.17 -0.26 1.29 16 6 C -0.19 -2.88 9.02 -39.52 -0.36 -3.23 16 7 C -0.12 -1.95 9.73 -39.29 -0.38 -2.33 16 8 C 0.12 2.34 6.70 -83.60 -0.56 1.78 16 9 C -0.06 -1.39 5.62 -104.37 -0.59 -1.97 16 10 C -0.10 -1.89 9.98 -39.57 -0.39 -2.28 16 11 C 0.06 1.55 2.86 -93.52 -0.27 1.28 16 12 H 0.08 2.14 8.14 -51.93 -0.42 1.71 16 13 C -0.52 -14.49 8.57 -34.44 -0.30 -14.79 16 14 H 0.07 1.89 7.77 -52.48 -0.41 1.48 16 15 C 0.07 1.93 5.32 -17.82 -0.09 1.84 16 16 N -0.84 -24.95 11.29 55.43 0.63 -24.32 16 17 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.52 13.59 7.39 -10.84 -0.08 13.51 16 22 O -0.48 -13.82 15.68 5.54 0.09 -13.74 16 23 N -0.57 -12.22 3.14 -120.57 -0.38 -12.60 16 24 C 0.08 1.39 10.77 59.84 0.64 2.03 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 31 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 32 H 0.12 1.46 6.30 -52.49 -0.33 1.13 16 33 H 0.12 1.55 7.70 -52.49 -0.40 1.15 16 34 H 0.13 2.52 8.06 -52.49 -0.42 2.09 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.27 7.95 -51.93 -0.41 0.86 16 38 H 0.06 0.86 7.61 -51.93 -0.40 0.47 16 LS Contribution 320.74 15.07 4.83 4.83 Total: -1.00 -32.29 320.74 -7.58 -39.86 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -5.26 Total: -1.55 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -2.26 Total: -3.94 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.25 Total: -36.92 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.11 Total: -18.79 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.29 -7.58 -39.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218779407.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.960 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds