Wall clock time and date at job start Mon Mar 30 2020 01:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47154 * 2 1 4 4 O 1.42897 * 109.47123 * 180.02562 * 3 2 1 5 5 C 1.35968 * 116.99916 * 180.02562 * 4 3 2 6 6 C 1.38745 * 120.14527 * 0.02562 * 5 4 3 7 7 C 1.37907 * 120.31300 * 179.97438 * 6 5 4 8 8 C 1.39358 * 120.20539 * 359.97424 * 7 6 5 9 9 C 1.38889 * 119.03976 * 0.04824 * 8 7 6 10 10 C 1.37664 * 120.85945 * 359.95576 * 9 8 7 11 11 C 1.51149 * 106.35491 * 180.02562 * 9 8 7 12 12 H 1.08999 * 110.50029 * 118.63746 * 11 9 8 13 13 C 1.50699 * 110.50280 * 241.18663 * 11 9 8 14 14 H 1.08005 * 120.00021 * 0.02562 * 13 11 9 15 15 C 1.37875 * 119.99888 * 179.97438 * 13 11 9 16 16 N 1.31516 * 120.00101 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 120.00155 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46886 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46993 * 120.00240 * 17 15 13 20 20 H 1.48499 * 109.47086 * 240.00395 * 17 15 13 21 21 C 1.51376 * 104.10379 * 359.97438 * 11 9 8 22 22 O 1.21297 * 126.43748 * 179.97438 * 21 11 9 23 23 N 1.34369 * 107.13148 * 359.97438 * 21 11 9 24 24 C 1.46496 * 123.89550 * 180.02562 * 23 21 11 25 25 H 1.09004 * 109.46894 * 60.00222 * 1 2 3 26 26 H 1.08994 * 109.47342 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47569 * 300.00128 * 1 2 3 28 28 H 1.08998 * 109.47067 * 239.99841 * 2 1 3 29 29 H 1.08996 * 109.47048 * 120.00061 * 2 1 3 30 30 H 1.09001 * 109.46987 * 59.99516 * 3 2 1 31 31 H 1.08996 * 109.47193 * 299.99972 * 3 2 1 32 32 H 1.07995 * 119.84243 * 0.02562 * 6 5 4 33 33 H 1.07997 * 119.89712 * 179.97438 * 7 6 5 34 34 H 1.07992 * 120.06791 * 180.30109 * 10 9 8 35 35 H 0.96996 * 120.00411 * 179.97438 * 16 15 13 36 36 H 1.08997 * 109.47743 * 270.03731 * 24 23 21 37 37 H 1.09000 * 109.47126 * 30.03981 * 24 23 21 38 38 H 1.09001 * 109.47693 * 150.03652 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0863 2.6540 -0.0001 6 6 3.3335 3.8195 0.0014 7 6 3.9560 5.0501 0.0024 8 6 5.3472 5.1321 0.0024 9 6 6.0917 3.9596 0.0004 10 6 5.4725 2.7300 -0.0007 11 6 7.5442 4.3777 0.0016 12 1 8.0461 4.0114 0.8971 13 6 8.2399 3.8723 -1.2359 14 1 7.6910 3.2981 -1.9677 15 6 9.5770 4.1440 -1.4346 16 7 10.2453 4.8437 -0.5439 17 14 10.4393 3.5182 -2.9690 18 1 9.4730 2.7635 -3.8069 19 1 10.9710 4.6691 -3.7422 20 1 11.5592 2.6248 -2.5778 21 6 7.4925 5.8906 0.0038 22 8 8.4432 6.6439 0.0058 23 7 6.1957 6.2424 0.0033 24 6 5.7256 7.6298 0.0044 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 2.2551 3.7627 0.0027 33 1 3.3635 5.9530 0.0032 34 1 6.0639 1.8264 0.0026 35 1 11.1860 5.0345 -0.6834 36 1 5.6088 7.9731 1.0323 37 1 6.4519 8.2600 -0.5088 38 1 4.7661 7.6889 -0.5095 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218779407.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:26 Heat of formation + Delta-G solvation = -57.656130 kcal Electronic energy + Delta-G solvation = -20967.282432 eV Core-core repulsion = 17774.475412 eV Total energy + Delta-G solvation = -3192.807021 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.18512 -40.43112 -38.35931 -36.12356 -35.38230 -34.52108 -33.23180 -30.78512 -29.05460 -28.03071 -27.23470 -25.45286 -23.33989 -22.72597 -21.70217 -21.02118 -18.79062 -18.76058 -17.75638 -17.21799 -17.09218 -16.69750 -16.42610 -16.25484 -15.10539 -14.93839 -14.76375 -14.50634 -14.46895 -14.24494 -13.75892 -13.67022 -13.51509 -13.20376 -13.14876 -12.83440 -12.82784 -12.69433 -12.28515 -12.25402 -11.84355 -11.70255 -11.51436 -11.28585 -10.78374 -10.57676 -10.43532 -9.72711 -8.34427 -8.15460 -6.35632 0.44982 0.46634 1.37665 1.38959 1.52091 1.93453 2.10701 2.31347 2.39970 2.94108 3.11732 3.71832 3.95949 3.99739 4.06106 4.09056 4.27176 4.33221 4.44307 4.45278 4.52007 4.55877 4.62851 4.65727 4.76064 4.88660 5.03108 5.13083 5.19155 5.21527 5.26713 5.35517 5.42725 5.47507 5.64026 5.68391 6.00517 6.00955 6.30385 6.63221 6.69690 7.31136 7.48582 8.86912 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.019001 B = 0.005099 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.224593 B = 5489.776522 C = 6677.187688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.050 3.950 4 O -0.333 6.333 5 C 0.103 3.897 6 C -0.173 4.173 7 C -0.095 4.095 8 C 0.091 3.909 9 C -0.092 4.092 10 C -0.117 4.117 11 C 0.048 3.952 12 H 0.044 0.956 13 C -0.536 4.536 14 H 0.065 0.935 15 C 0.015 3.985 16 N -0.879 5.879 17 Si 0.965 3.035 18 H -0.260 1.260 19 H -0.284 1.284 20 H -0.271 1.271 21 C 0.515 3.485 22 O -0.524 6.524 23 N -0.569 5.569 24 C 0.079 3.921 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.169 0.831 33 H 0.159 0.841 34 H 0.121 0.879 35 H 0.262 0.738 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.697 -4.235 1.163 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.025 4.025 4 O -0.247 6.247 5 C 0.058 3.942 6 C -0.192 4.192 7 C -0.116 4.116 8 C -0.004 4.004 9 C -0.094 4.094 10 C -0.136 4.136 11 C 0.027 3.973 12 H 0.061 0.939 13 C -0.573 4.573 14 H 0.083 0.917 15 C -0.189 4.189 16 N -0.513 5.513 17 Si 0.789 3.211 18 H -0.184 1.184 19 H -0.210 1.210 20 H -0.196 1.196 21 C 0.306 3.694 22 O -0.398 6.398 23 N -0.295 5.295 24 C -0.062 4.062 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.186 0.814 33 H 0.177 0.823 34 H 0.139 0.861 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -20.868 -3.768 1.228 21.241 hybrid contribution 1.190 0.128 -0.581 1.330 sum -19.678 -3.640 0.647 20.022 Atomic orbital electron populations 1.21669 0.92574 1.03098 1.02828 1.21509 0.97294 0.94132 1.03188 1.23150 0.76947 0.99843 1.02547 1.86033 1.23011 1.26526 1.89172 1.18647 0.90958 0.85165 0.99474 1.21123 1.01062 0.90061 1.06921 1.20374 0.89103 0.99424 1.02670 1.18445 0.92406 0.85865 1.03689 1.19997 0.95590 0.92972 1.00881 1.19405 0.92154 0.96444 1.05614 1.18243 0.90514 0.89518 0.99066 0.93874 1.20847 0.94586 1.36130 1.05757 0.91651 1.25984 0.98302 0.94629 0.99954 1.70255 1.09119 1.36179 1.35770 0.85404 0.78643 0.78053 0.79017 1.18424 1.21001 1.19579 1.21855 0.81197 0.92957 0.73390 1.90609 1.39645 1.60164 1.49378 1.46092 1.06210 1.06661 1.70522 1.21864 1.01402 0.79891 1.03063 0.91771 0.91180 0.91637 0.91554 0.91374 0.90657 0.90914 0.81388 0.82326 0.86143 0.92901 0.91008 0.92104 0.87677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.91 71.98 0.71 -0.71 16 2 C -0.12 -1.85 6.30 30.59 0.19 -1.66 16 3 C 0.05 0.89 4.74 71.98 0.34 1.23 16 4 O -0.33 -9.32 10.14 -93.19 -0.95 -10.27 16 5 C 0.10 3.25 6.69 22.53 0.15 3.40 16 6 C -0.17 -4.38 9.02 22.31 0.20 -4.18 16 7 C -0.09 -2.65 9.73 22.46 0.22 -2.43 16 8 C 0.09 3.54 6.70 38.31 0.26 3.79 16 9 C -0.09 -4.10 5.62 -19.70 -0.11 -4.21 16 10 C -0.12 -4.61 9.98 22.28 0.22 -4.39 16 11 C 0.05 2.61 2.86 -12.67 -0.04 2.58 16 12 H 0.04 2.59 8.14 -2.39 -0.02 2.58 16 13 C -0.54 -31.17 8.57 25.60 0.22 -30.95 16 14 H 0.07 3.72 7.77 -2.91 -0.02 3.70 16 15 C 0.02 0.90 5.32 84.65 0.45 1.35 16 16 N -0.88 -55.08 11.29 21.45 0.24 -54.84 16 17 Si 0.96 45.68 29.54 68.60 2.03 47.71 16 18 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 21 C 0.52 28.05 7.39 87.94 0.65 28.70 16 22 O -0.52 -32.28 15.68 -3.08 -0.05 -32.32 16 23 N -0.57 -24.24 3.14 -653.99 -2.05 -26.30 16 24 C 0.08 2.46 10.77 127.77 1.38 3.83 16 25 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 26 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.11 7.66 -2.39 -0.02 1.09 16 31 H 0.07 1.11 7.67 -2.39 -0.02 1.09 16 32 H 0.17 2.78 6.30 -2.91 -0.02 2.76 16 33 H 0.16 3.13 7.70 -2.91 -0.02 3.10 16 34 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 35 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 36 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.06 2.06 7.95 -2.39 -0.02 2.04 16 38 H 0.10 2.39 7.61 -2.39 -0.02 2.37 16 Total: -1.00 -75.96 320.74 5.12 -70.84 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 1.05 Total: 8.83 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 4.85 Total: -3.65 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -1.81 Total: -81.14 kcal Atomic # 8 Polarization: -41.60 SS G_CDS: -0.99 Total: -42.59 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -75.96 5.12 -70.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218779407.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.187 kcal (2) G-P(sol) polarization free energy of solvation -75.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds