Wall clock time and date at job start Mon Mar 30 2020 02:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.44767 * 2 1 4 4 C 1.53045 * 109.45958 * 119.96015 * 2 1 3 5 5 C 1.53189 * 109.31267 * 181.38458 * 4 2 1 6 6 N 1.46923 * 108.77751 * 305.36979 * 5 4 2 7 7 S 1.65606 * 120.62889 * 233.58517 * 6 5 4 8 8 O 1.42094 * 104.27817 * 333.92814 * 7 6 5 9 9 O 1.42106 * 104.27580 * 206.07045 * 7 6 5 10 10 C 1.81396 * 104.45103 * 90.00030 * 7 6 5 11 11 C 1.52997 * 109.47360 * 179.97438 * 10 7 6 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 C 1.46931 * 118.74107 * 53.86074 * 6 5 4 21 21 C 1.53037 * 109.46308 * 240.02896 * 2 1 3 22 22 H 1.09001 * 109.49668 * 58.63378 * 21 2 1 23 23 C 1.52995 * 109.50081 * 298.56782 * 21 2 1 24 24 H 1.09000 * 109.47451 * 300.03603 * 1 2 3 25 25 H 1.08999 * 109.46672 * 60.03995 * 1 2 3 26 26 H 1.09000 * 109.47141 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.49426 * 61.44009 * 4 2 1 28 28 H 1.08992 * 109.49752 * 301.34279 * 4 2 1 29 29 H 1.08999 * 109.58666 * 185.58022 * 5 4 2 30 30 H 1.08997 * 109.70153 * 65.22728 * 5 4 2 31 31 H 1.09002 * 109.47134 * 59.99751 * 10 7 6 32 32 H 1.08998 * 109.46953 * 300.00489 * 10 7 6 33 33 H 1.09002 * 109.47153 * 59.99820 * 11 10 7 34 34 H 1.09001 * 109.46832 * 300.00011 * 11 10 7 35 35 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 36 36 H 1.08995 * 109.58474 * 65.92316 * 20 6 5 37 37 H 1.08997 * 109.58648 * 186.35716 * 20 6 5 38 38 H 1.09002 * 109.46982 * 59.99535 * 23 21 2 39 39 H 1.09003 * 109.47444 * 179.97438 * 23 21 2 40 40 H 1.09000 * 109.46986 * 300.00278 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7206 1.2502 5 6 3.5713 -0.6885 1.2644 6 7 4.0679 -1.2488 0.0002 7 16 5.1667 -2.4878 0.0003 8 8 5.8521 -2.3482 1.2371 9 8 5.8519 -2.3486 -1.2369 10 6 4.1528 -3.9920 0.0006 11 6 5.0638 -5.2211 0.0001 12 6 4.2214 -6.4707 0.0011 13 1 3.1441 -6.3957 0.0015 14 6 4.8263 -7.7098 0.0003 15 7 6.1382 -7.8011 -0.0008 16 14 3.7821 -9.2587 0.0007 17 1 2.9240 -9.2777 -1.2112 18 1 4.6664 -10.4517 0.0003 19 1 2.9259 -9.2782 1.2139 20 6 3.5757 -0.6848 -1.2642 21 6 2.0399 -0.7208 -1.2500 22 1 1.6569 -0.2212 -2.1398 23 6 1.5598 -2.1734 -1.2334 24 1 -0.3634 0.5144 0.8896 25 1 -0.3632 0.5132 -0.8904 26 1 -0.3633 -1.0277 0.0005 27 1 1.6979 -1.7556 1.2384 28 1 1.6572 -0.2206 2.1398 29 1 3.9416 -1.2844 2.0986 30 1 3.9163 0.3402 1.3686 31 1 3.5235 -4.0062 -0.8893 32 1 3.5237 -4.0058 0.8906 33 1 5.6934 -5.2071 0.8898 34 1 5.6925 -5.2070 -0.8902 35 1 6.5637 -8.6728 -0.0010 36 1 3.9189 0.3450 -1.3630 37 1 3.9488 -1.2783 -2.0988 38 1 0.4701 -2.1958 -1.2205 39 1 1.9229 -2.6863 -2.1241 40 1 1.9441 -2.6729 -0.3441 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245934196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:06 Heat of formation + Delta-G solvation = -96.589759 kcal Electronic energy + Delta-G solvation = -20772.878806 eV Core-core repulsion = 17713.827448 eV Total energy + Delta-G solvation = -3059.051358 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.35741 -36.64326 -35.43122 -34.06160 -33.83599 -31.95356 -31.15250 -28.36852 -26.66410 -25.51669 -23.04150 -22.71242 -21.46758 -19.29263 -18.18129 -17.55007 -16.49089 -15.82608 -15.50204 -15.19171 -14.76097 -14.55191 -14.47730 -14.17999 -13.68417 -13.36210 -13.01446 -12.52122 -12.49014 -12.11184 -11.97641 -11.82099 -11.64346 -11.55568 -11.47737 -11.29515 -11.13952 -11.05680 -10.90416 -10.78480 -10.44648 -10.37915 -10.31111 -10.20782 -9.72761 -9.28560 -8.69460 -8.49331 -6.11486 -4.17008 0.79150 3.05945 3.27244 3.32173 3.33863 4.31079 4.39819 4.52364 4.54785 4.66966 4.68750 5.04331 5.07236 5.19558 5.23589 5.32764 5.42063 5.48999 5.54362 5.62969 5.66350 5.70685 5.75821 5.78963 5.85130 5.89577 5.91482 6.01762 6.11584 6.16788 6.35002 6.40975 6.53829 6.75409 7.31173 7.37458 7.81264 8.18739 8.86114 9.47567 10.99561 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.021696 B = 0.005569 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.276469 B = 5027.064077 C = 5731.171278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 H 0.069 0.931 4 C -0.135 4.135 5 C 0.123 3.877 6 N -1.004 6.004 7 S 2.589 3.411 8 O -0.966 6.966 9 O -0.965 6.965 10 C -0.591 4.591 11 C 0.029 3.971 12 C -0.519 4.519 13 H 0.061 0.939 14 C 0.058 3.942 15 N -0.891 5.891 16 Si 0.899 3.101 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.276 1.276 20 C 0.126 3.874 21 C -0.101 4.101 22 H 0.078 0.922 23 C -0.162 4.162 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.032 0.968 34 H 0.032 0.968 35 H 0.265 0.735 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.965 16.047 -0.269 19.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 H 0.087 0.913 4 C -0.174 4.174 5 C -0.003 4.003 6 N -0.840 5.840 7 S 2.688 3.312 8 O -0.956 6.956 9 O -0.956 6.956 10 C -0.724 4.724 11 C -0.010 4.010 12 C -0.559 4.559 13 H 0.079 0.921 14 C -0.144 4.144 15 N -0.529 5.529 16 Si 0.727 3.273 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C 0.001 3.999 21 C -0.121 4.121 22 H 0.096 0.904 23 C -0.219 4.219 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.840 16.081 -0.267 18.855 hybrid contribution -1.196 -1.162 -0.004 1.667 sum -11.035 14.920 -0.271 18.559 Atomic orbital electron populations 1.21889 0.95315 1.02072 1.01302 1.21056 0.95343 0.99113 0.94688 0.91265 1.22071 0.95586 1.01910 0.97817 1.21337 0.93763 0.99833 0.85347 1.57923 1.63317 1.51548 1.11249 1.05732 0.75448 0.75988 0.74060 1.93528 1.71026 1.85657 1.45405 1.93529 1.71035 1.85653 1.45349 1.30572 1.14420 1.17478 1.09969 1.18948 0.93819 0.89454 0.98763 1.20958 0.92898 0.89857 1.52167 0.92124 1.25060 0.95068 0.99372 0.94930 1.69945 1.08448 1.24949 1.49540 0.86543 0.80019 0.82096 0.78680 1.20095 1.21070 1.20106 1.21499 0.93301 0.99685 0.85443 1.21598 0.95344 0.97089 0.98105 0.90385 1.22101 1.01349 0.95644 1.02800 0.92935 0.92887 0.92229 0.90810 0.91051 0.89178 0.91534 0.86128 0.86359 0.94959 0.94943 0.92487 0.91470 0.89084 0.92238 0.92342 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.87 37.16 0.33 -0.82 16 2 C -0.08 -0.73 2.45 -90.58 -0.22 -0.95 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.13 -1.29 5.02 -26.61 -0.13 -1.42 16 5 C 0.12 1.43 6.31 -3.71 -0.02 1.40 16 6 N -1.00 -13.84 2.65 -113.28 -0.30 -14.14 16 7 S 2.59 47.87 5.41 -107.50 -0.58 47.29 16 8 O -0.97 -20.42 16.72 -57.54 -0.96 -21.39 16 9 O -0.97 -20.40 16.72 -57.54 -0.96 -21.36 16 10 C -0.59 -11.42 5.09 37.16 0.19 -11.23 16 11 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 12 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 13 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 16 Si 0.90 21.22 29.54 -169.99 -5.02 16.19 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 C 0.13 1.49 5.75 -3.48 -0.02 1.47 16 21 C -0.10 -0.98 2.72 -90.28 -0.25 -1.23 16 22 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 23 C -0.16 -1.75 7.85 37.16 0.29 -1.46 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.48 6.47 -51.93 -0.34 0.15 16 27 H 0.07 0.75 6.34 -51.93 -0.33 0.42 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 1.11 7.10 -51.93 -0.37 0.74 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.12 2.11 7.09 -51.92 -0.37 1.74 16 32 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 33 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 1.14 7.09 -51.93 -0.37 0.78 16 38 H 0.06 0.57 6.47 -51.93 -0.34 0.23 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.78 4.39 -51.93 -0.23 0.56 16 LS Contribution 319.81 15.07 4.82 4.82 Total: -1.00 -33.49 319.81 -9.18 -42.67 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.52 Total: -1.52 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: -0.38 Total: -26.73 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.44 Total: -39.97 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -1.92 Total: -42.75 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 47.87 SS G_CDS: -0.58 Total: 47.29 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.49 -9.18 -42.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245934196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.920 kcal (2) G-P(sol) polarization free energy of solvation -33.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds