Wall clock time and date at job start Mon Mar 30 2020 02:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.44767 * 2 1 4 4 C 1.53045 * 109.45958 * 119.96015 * 2 1 3 5 5 C 1.53189 * 109.31267 * 181.38458 * 4 2 1 6 6 N 1.46923 * 108.77751 * 305.36979 * 5 4 2 7 7 S 1.65606 * 120.62889 * 233.58517 * 6 5 4 8 8 O 1.42094 * 104.27817 * 333.92814 * 7 6 5 9 9 O 1.42106 * 104.27580 * 206.07045 * 7 6 5 10 10 C 1.81396 * 104.45103 * 90.00030 * 7 6 5 11 11 C 1.52997 * 109.47360 * 179.97438 * 10 7 6 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 C 1.46931 * 118.74107 * 53.86074 * 6 5 4 21 21 C 1.53037 * 109.46308 * 240.02896 * 2 1 3 22 22 H 1.09001 * 109.49668 * 58.63378 * 21 2 1 23 23 C 1.52995 * 109.50081 * 298.56782 * 21 2 1 24 24 H 1.09000 * 109.47451 * 300.03603 * 1 2 3 25 25 H 1.08999 * 109.46672 * 60.03995 * 1 2 3 26 26 H 1.09000 * 109.47141 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.49426 * 61.44009 * 4 2 1 28 28 H 1.08992 * 109.49752 * 301.34279 * 4 2 1 29 29 H 1.08999 * 109.58666 * 185.58022 * 5 4 2 30 30 H 1.08997 * 109.70153 * 65.22728 * 5 4 2 31 31 H 1.09002 * 109.47134 * 59.99751 * 10 7 6 32 32 H 1.08998 * 109.46953 * 300.00489 * 10 7 6 33 33 H 1.09002 * 109.47153 * 59.99820 * 11 10 7 34 34 H 1.09001 * 109.46832 * 300.00011 * 11 10 7 35 35 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 36 36 H 1.08995 * 109.58474 * 65.92316 * 20 6 5 37 37 H 1.08997 * 109.58648 * 186.35716 * 20 6 5 38 38 H 1.09002 * 109.46982 * 59.99535 * 23 21 2 39 39 H 1.09003 * 109.47444 * 179.97438 * 23 21 2 40 40 H 1.09000 * 109.46986 * 300.00278 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7206 1.2502 5 6 3.5713 -0.6885 1.2644 6 7 4.0679 -1.2488 0.0002 7 16 5.1667 -2.4878 0.0003 8 8 5.8521 -2.3482 1.2371 9 8 5.8519 -2.3486 -1.2369 10 6 4.1528 -3.9920 0.0006 11 6 5.0638 -5.2211 0.0001 12 6 4.2214 -6.4707 0.0011 13 1 3.1441 -6.3957 0.0015 14 6 4.8263 -7.7098 0.0003 15 7 6.1382 -7.8011 -0.0008 16 14 3.7821 -9.2587 0.0007 17 1 2.9240 -9.2777 -1.2112 18 1 4.6664 -10.4517 0.0003 19 1 2.9259 -9.2782 1.2139 20 6 3.5757 -0.6848 -1.2642 21 6 2.0399 -0.7208 -1.2500 22 1 1.6569 -0.2212 -2.1398 23 6 1.5598 -2.1734 -1.2334 24 1 -0.3634 0.5144 0.8896 25 1 -0.3632 0.5132 -0.8904 26 1 -0.3633 -1.0277 0.0005 27 1 1.6979 -1.7556 1.2384 28 1 1.6572 -0.2206 2.1398 29 1 3.9416 -1.2844 2.0986 30 1 3.9163 0.3402 1.3686 31 1 3.5235 -4.0062 -0.8893 32 1 3.5237 -4.0058 0.8906 33 1 5.6934 -5.2071 0.8898 34 1 5.6925 -5.2070 -0.8902 35 1 6.5637 -8.6728 -0.0010 36 1 3.9189 0.3450 -1.3630 37 1 3.9488 -1.2783 -2.0988 38 1 0.4701 -2.1958 -1.2205 39 1 1.9229 -2.6863 -2.1241 40 1 1.9441 -2.6729 -0.3441 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245934196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:06 Heat of formation + Delta-G solvation = -119.198933 kcal Electronic energy + Delta-G solvation = -20773.859213 eV Core-core repulsion = 17713.827448 eV Total energy + Delta-G solvation = -3060.031765 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.20798 -38.25306 -37.04613 -35.92190 -34.93984 -33.17229 -32.75136 -29.14875 -27.83752 -27.24668 -24.08642 -23.56545 -23.20848 -20.44290 -19.34950 -19.00950 -18.29433 -17.22266 -17.06131 -16.55433 -15.96714 -15.79501 -15.63855 -15.07217 -14.91132 -14.66819 -14.44493 -13.95602 -13.72566 -13.37736 -13.23588 -13.15658 -12.95452 -12.91521 -12.81906 -12.70929 -12.50525 -12.27376 -12.23344 -12.14784 -11.95128 -11.73190 -11.57605 -11.17323 -11.07178 -10.94138 -10.64626 -9.83078 -8.26293 -6.40603 -0.71519 1.39956 1.43517 1.51722 1.74272 2.37550 2.83624 3.06864 3.15380 3.62651 3.86678 3.92534 4.00493 4.06263 4.21276 4.28842 4.36453 4.55841 4.69092 4.69706 4.75932 4.81175 4.92036 4.95940 4.98549 5.01665 5.11703 5.20541 5.23009 5.25205 5.28718 5.37502 5.42531 5.55707 5.67150 5.68463 5.77103 6.05516 6.72486 7.29547 8.85891 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.021696 B = 0.005569 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.276469 B = 5027.064077 C = 5731.171278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 H 0.081 0.919 4 C -0.132 4.132 5 C 0.114 3.886 6 N -0.993 5.993 7 S 2.608 3.392 8 O -0.996 6.996 9 O -0.995 6.995 10 C -0.587 4.587 11 C 0.023 3.977 12 C -0.538 4.538 13 H 0.075 0.925 14 C -0.003 4.003 15 N -0.935 5.935 16 Si 0.973 3.027 17 H -0.263 1.263 18 H -0.284 1.284 19 H -0.263 1.263 20 C 0.117 3.883 21 C -0.095 4.095 22 H 0.099 0.901 23 C -0.168 4.168 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.004 0.996 34 H 0.004 0.996 35 H 0.267 0.733 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.752 17.196 -0.237 22.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.099 4.099 3 H 0.099 0.901 4 C -0.171 4.171 5 C -0.011 4.011 6 N -0.832 5.832 7 S 2.707 3.293 8 O -0.986 6.986 9 O -0.986 6.986 10 C -0.719 4.719 11 C -0.016 4.016 12 C -0.577 4.577 13 H 0.093 0.907 14 C -0.201 4.201 15 N -0.574 5.574 16 Si 0.797 3.203 17 H -0.188 1.188 18 H -0.209 1.209 19 H -0.188 1.188 20 C -0.008 4.008 21 C -0.115 4.115 22 H 0.117 0.883 23 C -0.225 4.225 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.023 0.977 34 H 0.022 0.978 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.640 17.229 -0.235 21.370 hybrid contribution -0.331 -1.413 -0.014 1.451 sum -12.971 15.817 -0.249 20.457 Atomic orbital electron populations 1.21851 0.94242 1.01983 1.02160 1.21061 0.96140 0.99307 0.93403 0.90101 1.22082 0.93643 1.02043 0.99361 1.21628 0.95456 1.00321 0.83673 1.57543 1.62738 1.49693 1.13204 1.04821 0.75603 0.76213 0.72711 1.93481 1.72378 1.86171 1.46570 1.93482 1.72398 1.86166 1.46529 1.30456 1.13872 1.15666 1.11863 1.18797 0.94297 0.92365 0.96115 1.21461 0.93850 0.90768 1.51614 0.90662 1.26112 0.96315 1.03363 0.94329 1.70099 1.10590 1.25913 1.50825 0.85375 0.78253 0.77225 0.79470 1.18750 1.20919 1.18751 1.21796 0.94997 1.00206 0.83803 1.21595 0.93455 0.96741 0.99743 0.88335 1.22157 1.02308 0.96295 1.01757 0.92116 0.92069 0.92774 0.91525 0.88970 0.90245 0.89668 0.84343 0.84357 0.97737 0.97763 0.92379 0.89517 0.90292 0.90841 0.93212 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.87 71.98 0.64 -1.07 16 2 C -0.08 -1.13 2.45 -10.77 -0.03 -1.15 16 3 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.13 -2.15 5.02 30.67 0.15 -2.00 16 5 C 0.11 2.42 6.31 86.36 0.55 2.97 16 6 N -0.99 -26.21 2.65 -512.30 -1.36 -27.57 16 7 S 2.61 98.06 5.41 -56.49 -0.31 97.76 16 8 O -1.00 -43.11 16.72 -127.65 -2.13 -45.25 16 9 O -1.00 -43.15 16.72 -127.65 -2.13 -45.29 16 10 C -0.59 -22.96 5.09 71.98 0.37 -22.59 16 11 C 0.02 1.23 4.98 29.85 0.15 1.38 16 12 C -0.54 -30.09 9.11 25.60 0.23 -29.85 16 13 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 14 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 15 N -0.93 -57.40 13.29 21.45 0.28 -57.12 16 16 Si 0.97 43.43 29.54 68.60 2.03 45.46 16 17 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 20 C 0.12 2.53 5.75 86.51 0.50 3.02 16 21 C -0.10 -1.59 2.72 -10.57 -0.03 -1.61 16 22 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 23 C -0.17 -3.29 7.85 71.98 0.56 -2.73 16 24 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.05 0.71 6.47 -2.39 -0.02 0.69 16 27 H 0.07 1.20 6.34 -2.38 -0.02 1.18 16 28 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.88 7.10 -2.39 -0.02 1.86 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.14 4.85 7.09 -2.39 -0.02 4.83 16 32 H 0.14 4.77 8.14 -2.39 -0.02 4.75 16 33 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.00 0.23 8.14 -2.39 -0.02 0.22 16 35 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.08 1.92 7.09 -2.39 -0.02 1.90 16 38 H 0.07 1.22 6.47 -2.39 -0.02 1.20 16 39 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.05 1.18 4.39 -2.39 -0.01 1.17 16 Total: -1.00 -73.69 319.81 0.94 -72.74 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 1.01 Total: 12.59 kcal Atomic # 6 Polarization: -56.89 SS G_CDS: 3.56 Total: -53.33 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -1.07 Total: -84.68 kcal Atomic # 8 Polarization: -86.27 SS G_CDS: -4.27 Total: -90.54 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 98.06 SS G_CDS: -0.31 Total: 97.76 kcal Total: -73.69 0.94 -72.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245934196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.455 kcal (2) G-P(sol) polarization free energy of solvation -73.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds