Wall clock time and date at job start Mon Mar 30 2020 02:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.52581 * 2 1 4 4 C 1.53042 * 109.49588 * 120.07929 * 2 1 3 5 5 C 1.53036 * 109.53788 * 181.31472 * 4 2 1 6 6 C 1.53188 * 109.31404 * 298.63668 * 5 4 2 7 7 N 1.46923 * 108.77597 * 54.63433 * 6 5 4 8 8 S 1.65602 * 120.63287 * 126.37099 * 7 6 5 9 9 O 1.42097 * 104.27763 * 333.92686 * 8 7 6 10 10 O 1.42101 * 104.27810 * 206.06961 * 8 7 6 11 11 C 1.81405 * 104.45029 * 89.99778 * 8 7 6 12 12 C 1.53004 * 109.46868 * 180.02562 * 11 8 7 13 13 C 1.50695 * 109.46637 * 180.02562 * 12 11 8 14 14 H 1.08004 * 120.00546 * 0.27598 * 13 12 11 15 15 C 1.37885 * 119.99721 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99913 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47326 * 90.00142 * 17 15 13 19 19 H 1.48506 * 109.46545 * 209.99892 * 17 15 13 20 20 H 1.48498 * 109.47210 * 329.99603 * 17 15 13 21 21 C 1.46931 * 118.73778 * 306.64238 * 7 6 5 22 22 H 1.09003 * 109.58451 * 173.14852 * 21 7 6 23 23 C 1.53001 * 109.58521 * 293.56961 * 21 7 6 24 24 H 1.09000 * 109.46909 * 299.91555 * 1 2 3 25 25 H 1.08996 * 109.47210 * 59.92289 * 1 2 3 26 26 H 1.08999 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46351 * 61.29780 * 4 2 1 28 28 H 1.08999 * 109.45111 * 301.32817 * 4 2 1 29 29 H 1.09003 * 109.50065 * 178.67974 * 5 4 2 30 30 H 1.09002 * 109.52250 * 58.60237 * 5 4 2 31 31 H 1.08998 * 109.58530 * 294.84239 * 6 5 4 32 32 H 1.09004 * 109.70447 * 174.48914 * 6 5 4 33 33 H 1.09000 * 109.46827 * 60.00318 * 11 8 7 34 34 H 1.08997 * 109.47005 * 299.99727 * 11 8 7 35 35 H 1.08992 * 109.47421 * 60.00146 * 12 11 8 36 36 H 1.08997 * 109.46955 * 299.99599 * 12 11 8 37 37 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.47142 * 59.99917 * 23 21 7 39 39 H 1.09000 * 109.46764 * 179.97438 * 23 21 7 40 40 H 1.08996 * 109.47309 * 300.00192 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0408 -0.7231 1.2484 5 6 3.5708 -0.6951 1.2661 6 6 4.1053 -1.4267 0.0309 7 7 3.5046 -0.8292 -1.1695 8 16 4.4588 -0.2843 -2.4084 9 8 5.6953 0.0336 -1.7847 10 8 3.6759 0.7209 -3.0377 11 6 4.6473 -1.7208 -3.5001 12 6 5.5205 -1.3402 -4.6975 13 6 5.6765 -2.5334 -5.6047 14 1 5.1968 -3.4682 -5.3548 15 6 6.4265 -2.4298 -6.7570 16 7 6.5631 -3.4713 -7.5485 17 14 7.2498 -0.8108 -7.1932 18 1 8.6106 -0.7718 -6.6001 19 1 7.3496 -0.6884 -8.6698 20 1 6.4435 0.3149 -6.6566 21 6 2.0415 -0.7188 -1.2471 22 1 1.7646 -0.1497 -2.1346 23 6 1.4247 -2.1171 -1.3178 24 1 -0.3633 0.5125 0.8907 25 1 -0.3633 0.5150 -0.8893 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6968 -1.7573 1.2354 28 1 1.6582 -0.2242 2.1388 29 1 3.9334 -1.1897 2.1672 30 1 3.9164 0.3387 1.2544 31 1 3.8376 -2.4818 0.0869 32 1 5.1897 -1.3269 -0.0148 33 1 3.6665 -2.0406 -3.8522 34 1 5.1196 -2.5351 -2.9507 35 1 6.5011 -1.0206 -4.3451 36 1 5.0485 -0.5257 -5.2470 37 1 7.0911 -3.3985 -8.3589 38 1 1.6987 -2.6806 -0.4259 39 1 0.3394 -2.0330 -1.3748 40 1 1.7965 -2.6340 -2.2025 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246028864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:48 Heat of formation + Delta-G solvation = -92.189108 kcal Electronic energy + Delta-G solvation = -20649.153055 eV Core-core repulsion = 17590.292524 eV Total energy + Delta-G solvation = -3058.860532 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.39985 -36.78214 -35.54769 -33.94120 -33.64360 -32.54092 -31.46869 -28.52886 -26.41838 -25.96963 -23.53902 -22.26971 -21.15910 -19.49819 -18.23537 -17.68317 -16.95695 -16.11369 -15.59543 -15.27355 -14.84641 -14.33198 -14.31964 -13.98835 -13.64318 -13.44683 -13.03275 -12.94538 -12.79127 -12.26936 -11.95750 -11.89614 -11.77767 -11.69103 -11.67926 -11.34647 -11.24364 -11.17487 -11.01472 -10.84162 -10.55949 -10.44242 -10.27283 -10.11840 -9.70524 -9.40728 -8.78215 -8.66088 -6.16468 -4.17549 0.65896 2.92218 3.26663 3.33942 3.38412 4.20765 4.36087 4.43340 4.46578 4.68087 4.77807 4.92546 5.04046 5.13968 5.15391 5.27055 5.32581 5.40047 5.42774 5.51698 5.57744 5.62022 5.66279 5.73396 5.82162 5.85004 5.91950 5.94978 6.01610 6.12189 6.29604 6.33616 6.38451 6.70531 6.82623 6.95035 7.55197 8.36981 8.84726 9.43373 10.95975 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.032023 B = 0.004958 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.174380 B = 5645.541159 C = 5814.296287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 H 0.074 0.926 4 C -0.113 4.113 5 C -0.131 4.131 6 C 0.117 3.883 7 N -1.000 6.000 8 S 2.587 3.413 9 O -0.965 6.965 10 O -0.965 6.965 11 C -0.582 4.582 12 C -0.007 4.007 13 C -0.519 4.519 14 H 0.078 0.922 15 C 0.072 3.928 16 N -0.896 5.896 17 Si 0.869 3.131 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.262 1.262 21 C 0.148 3.852 22 H 0.101 0.899 23 C -0.170 4.170 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.027 0.973 36 H 0.032 0.968 37 H 0.266 0.734 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.003 4.006 17.763 21.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 H 0.092 0.908 4 C -0.150 4.150 5 C -0.170 4.170 6 C -0.009 4.009 7 N -0.836 5.836 8 S 2.686 3.314 9 O -0.955 6.955 10 O -0.955 6.955 11 C -0.715 4.715 12 C -0.046 4.046 13 C -0.558 4.558 14 H 0.096 0.904 15 C -0.131 4.131 16 N -0.534 5.534 17 Si 0.695 3.305 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.186 1.186 21 C 0.042 3.958 22 H 0.119 0.881 23 C -0.229 4.229 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.045 0.955 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.562 4.842 17.535 21.035 hybrid contribution 0.361 0.007 -0.483 0.603 sum -10.201 4.849 17.052 20.453 Atomic orbital electron populations 1.21895 0.94631 1.02173 1.01908 1.21352 0.95635 0.99980 0.94852 0.90775 1.21578 0.95363 1.00871 0.97207 1.21845 0.95987 1.01563 0.97579 1.21396 0.98590 0.96793 0.84085 1.57949 1.15632 1.78338 1.31661 1.05715 0.73505 0.77628 0.74555 1.93529 1.44244 1.83346 1.74406 1.93529 1.69890 1.55346 1.76738 1.30356 1.10130 1.18097 1.12950 1.19407 0.93937 0.99472 0.91819 1.20852 1.32661 0.96822 1.05440 0.90435 1.24984 0.95715 0.96510 0.95867 1.69883 1.40279 1.29698 1.13532 0.86928 0.80728 0.84710 0.78122 1.19650 1.20725 1.18642 1.20902 0.78733 0.96772 0.99404 0.88057 1.22304 1.01066 0.96752 1.02742 0.92654 0.92306 0.92043 0.91500 0.92061 0.91005 0.91493 0.91543 0.88845 0.85744 0.85739 0.95453 0.95029 0.92385 0.91848 0.91223 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.70 37.16 0.32 -0.86 16 2 C -0.10 -0.97 2.63 -90.72 -0.24 -1.21 16 3 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 4 C -0.11 -0.97 4.96 -26.69 -0.13 -1.10 16 5 C -0.13 -1.25 6.08 -26.62 -0.16 -1.41 16 6 C 0.12 1.31 6.02 -3.71 -0.02 1.29 16 7 N -1.00 -13.33 2.93 -106.71 -0.31 -13.65 16 8 S 2.59 45.29 5.45 -107.50 -0.59 44.71 16 9 O -0.96 -19.12 16.59 -57.54 -0.95 -20.08 16 10 O -0.96 -19.21 16.58 -57.54 -0.95 -20.17 16 11 C -0.58 -10.87 6.12 37.16 0.23 -10.64 16 12 C -0.01 -0.17 4.05 -27.88 -0.11 -0.28 16 13 C -0.52 -14.59 9.66 -34.44 -0.33 -14.92 16 14 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 15 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 16 N -0.90 -27.18 13.96 55.43 0.77 -26.40 16 17 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 21 C 0.15 1.73 2.79 -67.82 -0.19 1.54 16 22 H 0.10 1.30 6.85 -51.93 -0.36 0.94 16 23 C -0.17 -1.65 8.50 37.16 0.32 -1.33 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.44 6.35 -51.93 -0.33 0.11 16 27 H 0.07 0.53 6.49 -51.93 -0.34 0.19 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.62 7.52 -51.93 -0.39 0.23 16 32 H 0.09 1.12 6.86 -51.93 -0.36 0.76 16 33 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 34 H 0.12 2.12 8.14 -51.93 -0.42 1.69 16 35 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 36 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 37 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.06 0.55 5.74 -51.93 -0.30 0.26 16 39 H 0.07 0.57 6.37 -51.93 -0.33 0.24 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 319.24 15.07 4.81 4.81 Total: -1.00 -33.55 319.24 -8.87 -42.42 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -6.56 Total: -1.65 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: -0.42 Total: -26.96 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.46 Total: -40.05 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -1.91 Total: -40.24 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Atomic # 16 Polarization: 45.29 SS G_CDS: -0.59 Total: 44.71 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.55 -8.87 -42.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246028864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.767 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds