Wall clock time and date at job start Mon Mar 30 2020 02:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.52581 * 2 1 4 4 C 1.53042 * 109.49588 * 120.07929 * 2 1 3 5 5 C 1.53036 * 109.53788 * 181.31472 * 4 2 1 6 6 C 1.53188 * 109.31404 * 298.63668 * 5 4 2 7 7 N 1.46923 * 108.77597 * 54.63433 * 6 5 4 8 8 S 1.65602 * 120.63287 * 126.37099 * 7 6 5 9 9 O 1.42097 * 104.27763 * 333.92686 * 8 7 6 10 10 O 1.42101 * 104.27810 * 206.06961 * 8 7 6 11 11 C 1.81405 * 104.45029 * 89.99778 * 8 7 6 12 12 C 1.53004 * 109.46868 * 180.02562 * 11 8 7 13 13 C 1.50695 * 109.46637 * 180.02562 * 12 11 8 14 14 H 1.08004 * 120.00546 * 0.27598 * 13 12 11 15 15 C 1.37885 * 119.99721 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99913 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47326 * 90.00142 * 17 15 13 19 19 H 1.48506 * 109.46545 * 209.99892 * 17 15 13 20 20 H 1.48498 * 109.47210 * 329.99603 * 17 15 13 21 21 C 1.46931 * 118.73778 * 306.64238 * 7 6 5 22 22 H 1.09003 * 109.58451 * 173.14852 * 21 7 6 23 23 C 1.53001 * 109.58521 * 293.56961 * 21 7 6 24 24 H 1.09000 * 109.46909 * 299.91555 * 1 2 3 25 25 H 1.08996 * 109.47210 * 59.92289 * 1 2 3 26 26 H 1.08999 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46351 * 61.29780 * 4 2 1 28 28 H 1.08999 * 109.45111 * 301.32817 * 4 2 1 29 29 H 1.09003 * 109.50065 * 178.67974 * 5 4 2 30 30 H 1.09002 * 109.52250 * 58.60237 * 5 4 2 31 31 H 1.08998 * 109.58530 * 294.84239 * 6 5 4 32 32 H 1.09004 * 109.70447 * 174.48914 * 6 5 4 33 33 H 1.09000 * 109.46827 * 60.00318 * 11 8 7 34 34 H 1.08997 * 109.47005 * 299.99727 * 11 8 7 35 35 H 1.08992 * 109.47421 * 60.00146 * 12 11 8 36 36 H 1.08997 * 109.46955 * 299.99599 * 12 11 8 37 37 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.47142 * 59.99917 * 23 21 7 39 39 H 1.09000 * 109.46764 * 179.97438 * 23 21 7 40 40 H 1.08996 * 109.47309 * 300.00192 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0408 -0.7231 1.2484 5 6 3.5708 -0.6951 1.2661 6 6 4.1053 -1.4267 0.0309 7 7 3.5046 -0.8292 -1.1695 8 16 4.4588 -0.2843 -2.4084 9 8 5.6953 0.0336 -1.7847 10 8 3.6759 0.7209 -3.0377 11 6 4.6473 -1.7208 -3.5001 12 6 5.5205 -1.3402 -4.6975 13 6 5.6765 -2.5334 -5.6047 14 1 5.1968 -3.4682 -5.3548 15 6 6.4265 -2.4298 -6.7570 16 7 6.5631 -3.4713 -7.5485 17 14 7.2498 -0.8108 -7.1932 18 1 8.6106 -0.7718 -6.6001 19 1 7.3496 -0.6884 -8.6698 20 1 6.4435 0.3149 -6.6566 21 6 2.0415 -0.7188 -1.2471 22 1 1.7646 -0.1497 -2.1346 23 6 1.4247 -2.1171 -1.3178 24 1 -0.3633 0.5125 0.8907 25 1 -0.3633 0.5150 -0.8893 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6968 -1.7573 1.2354 28 1 1.6582 -0.2242 2.1388 29 1 3.9334 -1.1897 2.1672 30 1 3.9164 0.3387 1.2544 31 1 3.8376 -2.4818 0.0869 32 1 5.1897 -1.3269 -0.0148 33 1 3.6665 -2.0406 -3.8522 34 1 5.1196 -2.5351 -2.9507 35 1 6.5011 -1.0206 -4.3451 36 1 5.0485 -0.5257 -5.2470 37 1 7.0911 -3.3985 -8.3589 38 1 1.6987 -2.6806 -0.4259 39 1 0.3394 -2.0330 -1.3748 40 1 1.7965 -2.6340 -2.2025 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246028864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:47 Heat of formation + Delta-G solvation = -115.338451 kcal Electronic energy + Delta-G solvation = -20650.156886 eV Core-core repulsion = 17590.292524 eV Total energy + Delta-G solvation = -3059.864362 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.24973 -38.27801 -37.05890 -35.91719 -34.52717 -33.51070 -33.33404 -29.32047 -27.90688 -27.17847 -24.45239 -23.16823 -22.92569 -20.57644 -19.62879 -19.03395 -18.59580 -17.29849 -17.07904 -16.42698 -16.30784 -15.89670 -15.27760 -15.08255 -14.88648 -14.80392 -14.41270 -13.86981 -13.82512 -13.65913 -13.27414 -13.21962 -13.09612 -13.00100 -12.91515 -12.80444 -12.50339 -12.29810 -12.25716 -11.98263 -11.76624 -11.73750 -11.61120 -11.38236 -11.26322 -11.00085 -10.86194 -9.84128 -8.38417 -6.44187 -0.75656 1.30184 1.31974 1.42246 1.68109 2.27856 2.78755 2.95351 3.12790 3.57361 3.87349 3.92421 3.94182 4.05978 4.14871 4.24938 4.34608 4.50855 4.53484 4.60482 4.64668 4.69065 4.91111 4.95057 4.97770 5.04155 5.05880 5.08324 5.13753 5.22062 5.23994 5.30392 5.40579 5.44935 5.54007 5.65090 5.76528 6.14991 6.61428 7.20269 8.77201 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.032023 B = 0.004958 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.174380 B = 5645.541159 C = 5814.296287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.055 0.945 4 C -0.109 4.109 5 C -0.130 4.130 6 C 0.106 3.894 7 N -0.991 5.991 8 S 2.610 3.390 9 O -0.989 6.989 10 O -0.991 6.991 11 C -0.587 4.587 12 C -0.016 4.016 13 C -0.528 4.528 14 H 0.049 0.951 15 C 0.016 3.984 16 N -0.939 5.939 17 Si 0.924 3.076 18 H -0.260 1.260 19 H -0.272 1.272 20 H -0.252 1.252 21 C 0.138 3.862 22 H 0.084 0.916 23 C -0.168 4.168 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.029 0.971 36 H 0.029 0.971 37 H 0.270 0.730 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.997 4.382 19.766 23.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 H 0.074 0.926 4 C -0.146 4.146 5 C -0.169 4.169 6 C -0.019 4.019 7 N -0.830 5.830 8 S 2.708 3.292 9 O -0.979 6.979 10 O -0.981 6.981 11 C -0.718 4.718 12 C -0.055 4.055 13 C -0.566 4.566 14 H 0.068 0.932 15 C -0.183 4.183 16 N -0.579 5.579 17 Si 0.746 3.254 18 H -0.184 1.184 19 H -0.197 1.197 20 H -0.176 1.176 21 C 0.033 3.967 22 H 0.102 0.898 23 C -0.226 4.226 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.114 0.886 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.552 5.213 19.531 23.283 hybrid contribution 0.598 -0.174 -1.026 1.200 sum -10.954 5.039 18.505 22.087 Atomic orbital electron populations 1.21880 0.92926 1.03182 1.02270 1.21367 0.97019 0.98864 0.94636 0.92641 1.21586 0.94427 1.01712 0.96890 1.21874 0.96852 1.00644 0.97530 1.21711 0.98125 0.98369 0.83654 1.57661 1.16193 1.78317 1.30813 1.04746 0.73086 0.76775 0.74556 1.93492 1.45982 1.83630 1.74786 1.93489 1.70393 1.56366 1.77857 1.30353 1.09880 1.19790 1.11765 1.19363 0.95227 0.97718 0.93219 1.21158 1.31930 0.97288 1.06266 0.93225 1.25852 0.96549 0.99988 0.95928 1.70005 1.41600 1.31917 1.14329 0.86041 0.80201 0.80640 0.78468 1.18422 1.19676 1.17592 1.21161 0.77458 0.98282 0.99835 0.89791 1.22310 1.02059 0.95215 1.03036 0.91479 0.92860 0.90663 0.89971 0.90568 0.88564 0.93093 0.89028 0.89902 0.84548 0.84322 0.95228 0.95229 0.92054 0.90308 0.89381 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.70 71.98 0.63 -1.29 16 2 C -0.10 -1.75 2.63 -10.86 -0.03 -1.78 16 3 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 4 C -0.11 -1.51 4.96 30.62 0.15 -1.36 16 5 C -0.13 -2.14 6.08 30.67 0.19 -1.96 16 6 C 0.11 2.15 6.02 86.36 0.52 2.67 16 7 N -0.99 -25.18 2.93 -491.52 -1.44 -26.62 16 8 S 2.61 90.42 5.45 -56.49 -0.31 90.11 16 9 O -0.99 -38.86 16.59 -127.65 -2.12 -40.98 16 10 O -0.99 -39.49 16.58 -127.65 -2.12 -41.61 16 11 C -0.59 -21.75 6.12 71.98 0.44 -21.31 16 12 C -0.02 -0.78 4.05 29.85 0.12 -0.66 16 13 C -0.53 -30.20 9.66 25.60 0.25 -29.95 16 14 H 0.05 3.02 7.99 -2.91 -0.02 3.00 16 15 C 0.02 0.91 5.47 84.66 0.46 1.37 16 16 N -0.94 -58.01 13.96 21.45 0.30 -57.71 16 17 Si 0.92 44.34 27.47 68.60 1.88 46.23 16 18 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 19 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.25 -11.60 6.54 99.48 0.65 -10.95 16 21 C 0.14 3.00 2.79 44.83 0.12 3.13 16 22 H 0.08 2.12 6.85 -2.39 -0.02 2.10 16 23 C -0.17 -2.81 8.50 71.98 0.61 -2.20 16 24 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.07 0.80 6.35 -2.39 -0.02 0.78 16 27 H 0.08 0.93 6.49 -2.39 -0.02 0.91 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 29 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.09 1.42 7.52 -2.39 -0.02 1.40 16 32 H 0.08 1.88 6.86 -2.39 -0.02 1.86 16 33 H 0.14 4.64 8.14 -2.39 -0.02 4.62 16 34 H 0.14 4.65 8.14 -2.39 -0.02 4.63 16 35 H 0.03 1.40 7.57 -2.39 -0.02 1.38 16 36 H 0.03 1.42 7.20 -2.39 -0.02 1.40 16 37 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 38 H 0.08 1.08 5.74 -2.39 -0.01 1.07 16 39 H 0.09 1.16 6.37 -2.39 -0.02 1.15 16 40 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -72.86 319.24 0.61 -72.25 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.95 Total: 11.66 kcal Atomic # 6 Polarization: -56.80 SS G_CDS: 3.46 Total: -53.34 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -1.14 Total: -84.32 kcal Atomic # 8 Polarization: -78.35 SS G_CDS: -4.23 Total: -82.59 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.23 kcal Atomic # 16 Polarization: 90.42 SS G_CDS: -0.31 Total: 90.11 kcal Total: -72.86 0.61 -72.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246028864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.089 kcal (2) G-P(sol) polarization free energy of solvation -72.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds