Wall clock time and date at job start Mon Mar 30 2020 02:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08997 * 109.51213 * 2 1 4 4 C 1.53714 * 109.44668 * 120.28557 * 2 1 3 5 5 N 1.47155 * 108.16464 * 172.37343 * 4 2 1 6 6 C 1.34780 * 120.97802 * 129.43038 * 5 4 2 7 7 O 1.21580 * 120.00134 * 3.17713 * 6 5 4 8 8 C 1.47641 * 119.99628 * 183.17795 * 6 5 4 9 9 C 1.40014 * 119.89697 * 146.60941 * 8 6 5 10 10 C 1.36311 * 120.11044 * 179.97438 * 9 8 6 11 11 C 1.40895 * 119.88824 * 359.97438 * 10 9 8 12 12 C 1.41112 * 120.10082 * 179.97438 * 11 10 9 13 13 H 1.07995 * 119.99871 * 336.14496 * 12 11 10 14 14 C 1.40224 * 120.00099 * 156.14174 * 12 11 10 15 15 N 1.30649 * 119.99768 * 341.66366 * 14 12 11 16 16 Si 1.86796 * 120.00230 * 161.65951 * 14 12 11 17 17 H 1.48494 * 109.47207 * 84.88072 * 16 14 12 18 18 H 1.48505 * 109.46856 * 324.88125 * 16 14 12 19 19 H 1.48500 * 109.47496 * 204.88253 * 16 14 12 20 20 C 1.40881 * 119.79494 * 0.25036 * 11 10 9 21 21 C 1.36320 * 119.89167 * 359.51594 * 20 11 10 22 22 C 1.47153 * 118.03674 * 309.16129 * 5 4 2 23 23 C 1.53295 * 108.38099 * 50.78389 * 22 5 4 24 24 O 1.42960 * 109.22740 * 307.69547 * 23 22 5 25 25 H 1.09006 * 109.47147 * 180.10422 * 1 2 3 26 26 H 1.09001 * 109.47682 * 300.09712 * 1 2 3 27 27 H 1.08995 * 109.47487 * 60.10373 * 1 2 3 28 28 H 1.09005 * 109.83352 * 52.69372 * 4 2 1 29 29 H 1.09004 * 109.74805 * 292.00390 * 4 2 1 30 30 H 1.08001 * 119.93954 * 359.97185 * 9 8 6 31 31 H 1.07997 * 120.05820 * 179.97438 * 10 9 8 32 32 H 0.97007 * 119.99633 * 179.97438 * 15 14 12 33 33 H 1.08004 * 120.05750 * 179.71989 * 20 11 10 34 34 H 1.08000 * 119.94452 * 180.20761 * 21 20 11 35 35 H 1.08998 * 109.67943 * 170.50313 * 22 5 4 36 36 H 1.08996 * 109.67856 * 291.05836 * 22 5 4 37 37 H 1.09001 * 109.51541 * 67.62537 * 23 22 5 38 38 H 1.09005 * 109.50956 * 187.72099 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0417 -0.7310 1.2516 5 7 3.5012 -0.8767 1.1332 6 6 4.3193 -0.5050 2.1378 7 8 3.8517 -0.0956 3.1827 8 6 5.7832 -0.5951 1.9692 9 6 6.6162 0.3442 2.5891 10 6 7.9685 0.2648 2.4368 11 6 8.5277 -0.7650 1.6545 12 6 9.9269 -0.8511 1.4934 13 1 10.5400 0.0292 1.6178 14 6 10.5214 -2.0797 1.1718 15 7 9.8668 -3.1933 1.3679 16 14 12.2491 -2.1243 0.4631 17 1 13.2390 -2.0940 1.5696 18 1 12.4538 -0.9455 -0.4167 19 1 12.4281 -3.3688 -0.3272 20 6 7.6852 -1.7050 1.0289 21 6 6.3343 -1.6203 1.1909 22 6 4.0407 -1.4457 -0.1120 23 6 3.4312 -0.6848 -1.2950 24 8 2.0075 -0.6758 -1.1658 25 1 -0.3634 -1.0277 0.0019 26 1 -0.3634 0.5153 0.8891 27 1 -0.3634 0.5122 -0.8909 28 1 1.5788 -1.7155 1.3201 29 1 1.8018 -0.1493 2.1417 30 1 6.1866 1.1329 3.1888 31 1 8.6102 0.9900 2.9150 32 1 10.2779 -4.0432 1.1451 33 1 8.1091 -2.4935 0.4246 34 1 5.6879 -2.3424 0.7144 35 1 5.1252 -1.3374 -0.1254 36 1 3.7757 -2.5009 -0.1784 37 1 3.8029 0.3399 -1.2993 38 1 3.7098 -1.1770 -2.2269 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270290515.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:36 Heat of formation + Delta-G solvation = -47.158664 kcal Electronic energy + Delta-G solvation = -21173.323934 eV Core-core repulsion = 17980.972117 eV Total energy + Delta-G solvation = -3192.351816 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.08691 -38.23583 -37.05868 -34.49530 -33.90459 -32.92735 -30.33456 -29.60873 -28.53109 -26.92057 -25.19849 -23.43175 -21.98657 -21.13823 -20.69787 -18.97147 -17.58671 -16.69542 -16.48016 -15.81339 -15.51249 -15.16461 -14.96755 -14.48451 -14.11412 -13.88222 -13.34098 -12.97317 -12.73879 -12.69581 -12.31293 -12.27991 -12.06894 -11.70845 -11.54523 -11.38467 -11.22444 -11.15084 -10.94417 -10.69712 -10.47377 -10.12237 -9.97155 -9.53729 -9.37341 -8.94435 -8.21550 -7.70387 -7.58253 -7.06158 -4.62764 2.23510 2.88966 2.92424 2.94118 2.98565 3.34399 3.69247 3.73103 3.76552 4.43527 4.73943 5.01754 5.04581 5.13502 5.28101 5.39120 5.44765 5.56196 5.64015 5.66009 5.83074 5.89925 5.95667 6.00113 6.06124 6.12148 6.24040 6.72070 6.78350 6.82605 6.99718 7.08527 7.18275 7.38537 7.55946 7.74634 7.80995 7.98568 8.04373 8.35702 8.60109 8.71001 8.91082 9.86009 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.031690 B = 0.004275 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.338636 B = 6548.228661 C = 7062.167593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.074 3.926 3 H 0.061 0.939 4 C 0.086 3.914 5 N -0.622 5.622 6 C 0.578 3.422 7 O -0.568 6.568 8 C -0.281 4.281 9 C -0.026 4.026 10 C -0.236 4.236 11 C 0.127 3.873 12 C -0.444 4.444 13 H 0.084 0.916 14 C 0.075 3.925 15 N -0.771 5.771 16 Si 0.912 3.088 17 H -0.266 1.266 18 H -0.258 1.258 19 H -0.274 1.274 20 C -0.177 4.177 21 C -0.082 4.082 22 C 0.046 3.954 23 C 0.048 3.952 24 O -0.383 6.383 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.287 0.713 33 H 0.122 0.878 34 H 0.108 0.892 35 H 0.137 0.863 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.647 1.391 -6.342 10.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.015 3.985 3 H 0.079 0.921 4 C -0.038 4.038 5 N -0.356 5.356 6 C 0.373 3.627 7 O -0.449 6.449 8 C -0.286 4.286 9 C -0.045 4.045 10 C -0.255 4.255 11 C 0.124 3.876 12 C -0.471 4.471 13 H 0.102 0.898 14 C -0.146 4.146 15 N -0.394 5.394 16 Si 0.736 3.264 17 H -0.191 1.191 18 H -0.181 1.181 19 H -0.198 1.198 20 C -0.196 4.196 21 C -0.100 4.100 22 C -0.077 4.077 23 C -0.029 4.029 24 O -0.302 6.302 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.139 0.861 34 H 0.125 0.875 35 H 0.154 0.846 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.989 1.252 -5.918 10.835 hybrid contribution 0.946 -0.179 -0.092 0.967 sum -8.042 1.073 -6.010 10.097 Atomic orbital electron populations 1.21715 0.92637 1.03013 1.02559 1.22543 0.95128 0.95420 0.85388 0.92096 1.22255 0.81362 1.01111 0.99036 1.48006 1.05674 1.65037 1.16891 1.18754 0.87266 0.74890 0.81775 1.90636 1.77931 1.49007 1.27328 1.18803 0.89780 1.05181 1.14798 1.20269 0.93224 0.95935 0.95050 1.20689 0.93714 1.04249 1.06881 1.17768 0.93380 0.89736 0.86757 1.19819 0.92602 0.95307 1.39409 0.89763 1.26095 1.00774 0.94984 0.92763 1.69746 1.38703 0.99132 1.31845 0.86244 0.81083 0.79132 0.79961 1.19078 1.18150 1.19831 1.21020 0.91571 1.02750 1.04270 1.20840 0.95679 0.96527 0.96962 1.23343 1.03491 0.97222 0.83610 1.23044 0.80719 1.00497 0.98691 1.87895 1.21465 1.77566 1.43317 0.91687 0.90885 0.91677 0.91525 0.88580 0.88583 0.88368 0.90178 0.86052 0.87457 0.84607 0.91305 0.92648 0.87883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.57 37.15 0.36 -1.04 16 2 C 0.07 0.96 3.41 -26.36 -0.09 0.87 16 3 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.09 1.29 5.94 -3.31 -0.02 1.27 16 5 N -0.62 -11.06 3.01 -173.20 -0.52 -11.58 16 6 C 0.58 12.55 7.44 -12.42 -0.09 12.46 16 7 O -0.57 -13.77 16.25 5.29 0.09 -13.68 16 8 C -0.28 -6.39 5.55 -104.73 -0.58 -6.97 16 9 C -0.03 -0.60 9.53 -39.61 -0.38 -0.97 16 10 C -0.24 -5.61 9.73 -39.27 -0.38 -6.00 16 11 C 0.13 3.16 5.58 -106.80 -0.60 2.57 16 12 C -0.44 -10.85 9.04 -37.75 -0.34 -11.19 16 13 H 0.08 1.96 7.91 -52.49 -0.42 1.55 16 14 C 0.08 1.73 5.13 -17.31 -0.09 1.64 16 15 N -0.77 -18.25 10.95 55.56 0.61 -17.65 16 16 Si 0.91 16.96 29.60 -169.99 -5.03 11.93 16 17 H -0.27 -4.93 7.11 56.52 0.40 -4.52 16 18 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 19 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 20 C -0.18 -4.22 8.64 -39.27 -0.34 -4.56 16 21 C -0.08 -1.78 7.37 -39.61 -0.29 -2.07 16 22 C 0.05 0.70 5.06 -3.53 -0.02 0.68 16 23 C 0.05 0.63 6.98 37.31 0.26 0.89 16 24 O -0.38 -5.36 10.38 -35.23 -0.37 -5.72 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.10 1.52 7.10 -51.93 -0.37 1.15 16 30 H 0.10 2.14 7.96 -52.49 -0.42 1.72 16 31 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 32 H 0.29 6.11 8.29 -40.82 -0.34 5.78 16 33 H 0.12 2.92 6.13 -52.48 -0.32 2.60 16 34 H 0.11 2.04 5.29 -52.49 -0.28 1.77 16 35 H 0.14 2.24 3.73 -52.03 -0.19 2.05 16 36 H 0.07 0.98 8.11 -51.93 -0.42 0.55 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 310.07 15.07 4.67 4.67 Total: -1.00 -28.38 310.07 -8.09 -36.46 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -4.93 Total: 7.99 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -2.60 Total: -12.42 kcal Atomic # 7 Polarization: -29.31 SS G_CDS: 0.09 Total: -29.23 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.28 Total: -19.40 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -5.03 Total: 11.93 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.38 -8.09 -36.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270290515.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.694 kcal (2) G-P(sol) polarization free energy of solvation -28.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds