Wall clock time and date at job start Mon Mar 30 2020 02:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08997 * 109.51213 * 2 1 4 4 C 1.53714 * 109.44668 * 120.28557 * 2 1 3 5 5 N 1.47155 * 108.16464 * 172.37343 * 4 2 1 6 6 C 1.34780 * 120.97802 * 129.43038 * 5 4 2 7 7 O 1.21580 * 120.00134 * 3.17713 * 6 5 4 8 8 C 1.47641 * 119.99628 * 183.17795 * 6 5 4 9 9 C 1.40014 * 119.89697 * 146.60941 * 8 6 5 10 10 C 1.36311 * 120.11044 * 179.97438 * 9 8 6 11 11 C 1.40895 * 119.88824 * 359.97438 * 10 9 8 12 12 C 1.41112 * 120.10082 * 179.97438 * 11 10 9 13 13 H 1.07995 * 119.99871 * 336.14496 * 12 11 10 14 14 C 1.40224 * 120.00099 * 156.14174 * 12 11 10 15 15 N 1.30649 * 119.99768 * 341.66366 * 14 12 11 16 16 Si 1.86796 * 120.00230 * 161.65951 * 14 12 11 17 17 H 1.48494 * 109.47207 * 84.88072 * 16 14 12 18 18 H 1.48505 * 109.46856 * 324.88125 * 16 14 12 19 19 H 1.48500 * 109.47496 * 204.88253 * 16 14 12 20 20 C 1.40881 * 119.79494 * 0.25036 * 11 10 9 21 21 C 1.36320 * 119.89167 * 359.51594 * 20 11 10 22 22 C 1.47153 * 118.03674 * 309.16129 * 5 4 2 23 23 C 1.53295 * 108.38099 * 50.78389 * 22 5 4 24 24 O 1.42960 * 109.22740 * 307.69547 * 23 22 5 25 25 H 1.09006 * 109.47147 * 180.10422 * 1 2 3 26 26 H 1.09001 * 109.47682 * 300.09712 * 1 2 3 27 27 H 1.08995 * 109.47487 * 60.10373 * 1 2 3 28 28 H 1.09005 * 109.83352 * 52.69372 * 4 2 1 29 29 H 1.09004 * 109.74805 * 292.00390 * 4 2 1 30 30 H 1.08001 * 119.93954 * 359.97185 * 9 8 6 31 31 H 1.07997 * 120.05820 * 179.97438 * 10 9 8 32 32 H 0.97007 * 119.99633 * 179.97438 * 15 14 12 33 33 H 1.08004 * 120.05750 * 179.71989 * 20 11 10 34 34 H 1.08000 * 119.94452 * 180.20761 * 21 20 11 35 35 H 1.08998 * 109.67943 * 170.50313 * 22 5 4 36 36 H 1.08996 * 109.67856 * 291.05836 * 22 5 4 37 37 H 1.09001 * 109.51541 * 67.62537 * 23 22 5 38 38 H 1.09005 * 109.50956 * 187.72099 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0417 -0.7310 1.2516 5 7 3.5012 -0.8767 1.1332 6 6 4.3193 -0.5050 2.1378 7 8 3.8517 -0.0956 3.1827 8 6 5.7832 -0.5951 1.9692 9 6 6.6162 0.3442 2.5891 10 6 7.9685 0.2648 2.4368 11 6 8.5277 -0.7650 1.6545 12 6 9.9269 -0.8511 1.4934 13 1 10.5400 0.0292 1.6178 14 6 10.5214 -2.0797 1.1718 15 7 9.8668 -3.1933 1.3679 16 14 12.2491 -2.1243 0.4631 17 1 13.2390 -2.0940 1.5696 18 1 12.4538 -0.9455 -0.4167 19 1 12.4281 -3.3688 -0.3272 20 6 7.6852 -1.7050 1.0289 21 6 6.3343 -1.6203 1.1909 22 6 4.0407 -1.4457 -0.1120 23 6 3.4312 -0.6848 -1.2950 24 8 2.0075 -0.6758 -1.1658 25 1 -0.3634 -1.0277 0.0019 26 1 -0.3634 0.5153 0.8891 27 1 -0.3634 0.5122 -0.8909 28 1 1.5788 -1.7155 1.3201 29 1 1.8018 -0.1493 2.1417 30 1 6.1866 1.1329 3.1888 31 1 8.6102 0.9900 2.9150 32 1 10.2779 -4.0432 1.1451 33 1 8.1091 -2.4935 0.4246 34 1 5.6879 -2.3424 0.7144 35 1 5.1252 -1.3374 -0.1254 36 1 3.7757 -2.5009 -0.1784 37 1 3.8029 0.3399 -1.2993 38 1 3.7098 -1.1770 -2.2269 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270290515.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:36 Heat of formation + Delta-G solvation = -63.253625 kcal Electronic energy + Delta-G solvation = -21174.021863 eV Core-core repulsion = 17980.972117 eV Total energy + Delta-G solvation = -3193.049746 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.53078 -39.68078 -38.77661 -36.01165 -35.57386 -34.01882 -32.04139 -31.41556 -29.72167 -28.42760 -26.70775 -24.67914 -23.51858 -22.83326 -22.05953 -20.51923 -19.37720 -18.20873 -17.76170 -17.28636 -17.00966 -16.47440 -16.37165 -15.74193 -15.64615 -15.40739 -14.97909 -14.52536 -14.24204 -14.16467 -13.76907 -13.52037 -13.29878 -13.15646 -12.95054 -12.81891 -12.68146 -12.42870 -12.36638 -12.18147 -11.80171 -11.73605 -11.31883 -11.17958 -11.09085 -10.61801 -9.66224 -9.51000 -9.36064 -8.79280 -6.47892 0.46866 1.09521 1.39491 1.43463 1.55203 1.90949 2.03740 2.17503 2.67049 2.75081 3.62114 3.62922 3.79649 3.98259 4.00612 4.17555 4.19079 4.32054 4.39950 4.46254 4.52996 4.67682 4.72856 4.83405 4.90422 4.92078 4.98581 5.02851 5.14144 5.24788 5.27571 5.47035 5.57715 5.77661 5.93813 5.97723 6.12122 6.20890 6.39575 6.53055 6.77298 6.87604 7.24521 8.16008 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.031690 B = 0.004275 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.338636 B = 6548.228661 C = 7062.167593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.076 3.924 3 H 0.054 0.946 4 C 0.082 3.918 5 N -0.617 5.617 6 C 0.574 3.426 7 O -0.602 6.602 8 C -0.291 4.291 9 C -0.036 4.036 10 C -0.250 4.250 11 C 0.101 3.899 12 C -0.474 4.474 13 H 0.085 0.915 14 C 0.040 3.960 15 N -0.799 5.799 16 Si 0.987 3.013 17 H -0.262 1.262 18 H -0.256 1.256 19 H -0.262 1.262 20 C -0.194 4.194 21 C -0.068 4.068 22 C 0.042 3.958 23 C 0.051 3.949 24 O -0.386 6.386 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.297 0.703 33 H 0.117 0.883 34 H 0.136 0.864 35 H 0.123 0.877 36 H 0.087 0.913 37 H 0.050 0.950 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.167 0.646 -7.949 12.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.017 3.983 3 H 0.072 0.928 4 C -0.041 4.041 5 N -0.350 5.350 6 C 0.368 3.632 7 O -0.486 6.486 8 C -0.296 4.296 9 C -0.055 4.055 10 C -0.270 4.270 11 C 0.098 3.902 12 C -0.501 4.501 13 H 0.103 0.897 14 C -0.179 4.179 15 N -0.422 5.422 16 Si 0.806 3.194 17 H -0.187 1.187 18 H -0.180 1.180 19 H -0.186 1.186 20 C -0.213 4.213 21 C -0.087 4.087 22 C -0.080 4.080 23 C -0.026 4.026 24 O -0.305 6.305 25 H 0.089 0.911 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.134 0.866 34 H 0.154 0.846 35 H 0.140 0.860 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.545 0.498 -7.557 12.184 hybrid contribution 1.016 0.042 0.415 1.098 sum -8.529 0.540 -7.141 11.137 Atomic orbital electron populations 1.21719 0.89984 1.03825 1.03787 1.22616 0.97108 0.94500 0.84034 0.92813 1.22492 0.79562 1.02096 0.99926 1.48050 1.06702 1.63577 1.16621 1.18624 0.87201 0.75135 0.82209 1.90609 1.78333 1.50782 1.28838 1.19057 0.90761 1.05148 1.14605 1.20420 0.93296 0.96440 0.95328 1.20823 0.94135 1.04627 1.07367 1.18116 0.94249 0.90468 0.87387 1.20099 0.92747 0.96336 1.40947 0.89655 1.26913 1.04760 0.93985 0.92279 1.69767 1.40621 0.99917 1.31894 0.85138 0.75678 0.79429 0.79125 1.18710 1.17972 1.18613 1.21039 0.92343 1.02929 1.05035 1.21065 0.95295 0.96396 0.95919 1.23459 1.02797 0.98497 0.83241 1.23102 0.80382 1.00243 0.98846 1.87911 1.21612 1.77572 1.43426 0.91071 0.89530 0.90627 0.90100 0.89639 0.88277 0.87764 0.89154 0.86557 0.84645 0.85984 0.89512 0.93185 0.84891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.57 71.98 0.69 -1.62 16 2 C 0.08 1.82 3.41 30.83 0.11 1.92 16 3 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 4 C 0.08 2.34 5.94 86.49 0.51 2.85 16 5 N -0.62 -21.28 3.01 -820.15 -2.47 -23.75 16 6 C 0.57 24.94 7.44 86.73 0.65 25.58 16 7 O -0.60 -29.51 16.25 -3.97 -0.06 -29.58 16 8 C -0.29 -13.36 5.55 -19.93 -0.11 -13.47 16 9 C -0.04 -1.70 9.53 22.25 0.21 -1.49 16 10 C -0.25 -12.27 9.73 22.47 0.22 -12.05 16 11 C 0.10 5.16 5.58 -21.28 -0.12 5.04 16 12 C -0.47 -23.57 9.04 23.46 0.21 -23.36 16 13 H 0.09 4.06 7.91 -2.91 -0.02 4.04 16 14 C 0.04 1.82 5.13 85.35 0.44 2.25 16 15 N -0.80 -37.75 10.95 21.87 0.24 -37.51 16 16 Si 0.99 34.11 29.60 68.60 2.03 36.14 16 17 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 18 H -0.26 -8.71 7.11 99.48 0.71 -8.01 16 19 H -0.26 -8.51 7.11 99.48 0.71 -7.80 16 20 C -0.19 -9.39 8.64 22.47 0.19 -9.20 16 21 C -0.07 -2.98 7.37 22.25 0.16 -2.81 16 22 C 0.04 1.19 5.06 86.35 0.44 1.63 16 23 C 0.05 1.23 6.98 72.08 0.50 1.73 16 24 O -0.39 -9.72 10.38 -148.98 -1.55 -11.26 16 25 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.09 2.66 7.10 -2.38 -0.02 2.64 16 30 H 0.10 4.56 7.96 -2.91 -0.02 4.54 16 31 H 0.10 4.81 8.06 -2.91 -0.02 4.78 16 32 H 0.30 12.48 8.29 -92.70 -0.77 11.71 16 33 H 0.12 5.67 6.13 -2.91 -0.02 5.66 16 34 H 0.14 5.00 5.29 -2.91 -0.02 4.99 16 35 H 0.12 3.87 3.73 -2.48 -0.01 3.86 16 36 H 0.09 2.21 8.11 -2.39 -0.02 2.19 16 37 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.13 2.40 8.14 -2.38 -0.02 2.38 16 Total: -1.00 -61.35 310.07 3.36 -57.99 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 1.07 Total: 30.95 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 4.10 Total: -22.99 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -2.23 Total: -61.25 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -1.61 Total: -40.84 kcal Atomic # 14 Polarization: 34.11 SS G_CDS: 2.03 Total: 36.14 kcal Total: -61.35 3.36 -57.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270290515.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.264 kcal (2) G-P(sol) polarization free energy of solvation -61.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds