Wall clock time and date at job start Mon Mar 30 2020 01:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99989 * 2 1 4 4 O 1.42904 * 109.47140 * 135.00140 * 3 2 1 5 5 C 1.35894 * 116.99925 * 180.02562 * 4 3 2 6 6 C 1.38810 * 120.02168 * 0.02562 * 5 4 3 7 7 C 1.38175 * 120.08663 * 179.97438 * 6 5 4 8 8 C 1.38165 * 120.12046 * 359.74199 * 7 6 5 9 9 C 1.38887 * 120.04330 * 0.51091 * 8 7 6 10 10 N 1.39918 * 120.04633 * 179.76950 * 9 8 7 11 11 C 1.34780 * 120.00082 * 214.81619 * 10 9 8 12 12 O 1.21281 * 120.00158 * 355.37611 * 11 10 9 13 13 C 1.50702 * 119.99980 * 175.37734 * 11 10 9 14 14 C 1.53002 * 109.47116 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47116 * 180.02562 * 14 13 11 16 16 H 1.08003 * 119.99997 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99884 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00255 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99990 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47199 * 60.00328 * 19 17 15 21 21 H 1.48503 * 109.47186 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47095 * 300.00024 * 19 17 15 23 23 C 1.38586 * 120.02084 * 179.97438 * 5 4 3 24 24 H 1.08005 * 119.99944 * 179.97438 * 1 2 3 25 25 H 1.07996 * 120.00331 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99835 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47071 * 15.00098 * 3 2 1 28 28 H 1.08996 * 109.47573 * 255.00145 * 3 2 1 29 29 H 1.08004 * 119.95829 * 359.95089 * 6 5 4 30 30 H 1.07993 * 119.93899 * 179.97438 * 7 6 5 31 31 H 1.08002 * 119.97919 * 180.27790 * 8 7 6 32 32 H 0.97003 * 120.00278 * 34.81389 * 10 9 8 33 33 H 1.09002 * 109.47212 * 60.00356 * 13 11 10 34 34 H 1.08997 * 109.47229 * 300.00054 * 13 11 10 35 35 H 1.08997 * 109.47017 * 300.00063 * 14 13 11 36 36 H 1.08995 * 109.47263 * 59.99972 * 14 13 11 37 37 H 0.97007 * 120.00238 * 179.97438 * 18 17 15 38 38 H 1.07994 * 120.05649 * 0.04922 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9090 2.3453 1.0789 6 6 3.6574 3.4674 0.3015 7 6 4.4517 4.5908 0.4292 8 6 5.4953 4.6028 1.3346 9 6 5.7550 3.4811 2.1113 10 7 6.8148 3.4916 3.0247 11 6 7.5215 2.3663 3.2499 12 8 7.1874 1.3251 2.7252 13 6 8.7270 2.4017 4.1536 14 6 9.3425 1.0035 4.2378 15 6 10.5476 1.0387 5.1421 16 1 10.8450 1.9658 5.6096 17 6 11.2705 -0.1125 5.3725 18 7 10.9087 -1.2412 4.8027 19 14 12.7638 -0.0689 6.4939 20 1 12.3515 0.3732 7.8502 21 1 13.3613 -1.4260 6.5755 22 1 13.7660 0.8806 5.9470 23 6 4.9579 2.3519 1.9847 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5400 0.9352 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3855 2.1161 0.2660 28 1 2.4755 1.4868 -0.9926 29 1 2.8400 3.4622 -0.4044 30 1 4.2541 5.4623 -0.1771 31 1 6.1119 5.4838 1.4357 32 1 7.0410 4.3088 3.4960 33 1 8.4252 2.7267 5.1494 34 1 9.4624 3.0984 3.7514 35 1 8.6073 0.3064 4.6398 36 1 9.6444 0.6788 3.2421 37 1 11.4176 -2.0511 4.9646 38 1 5.1551 1.4798 2.5904 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292469468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:52 Heat of formation + Delta-G solvation = -34.317782 kcal Electronic energy + Delta-G solvation = -19852.112297 eV Core-core repulsion = 16660.317303 eV Total energy + Delta-G solvation = -3191.794994 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.51565 -39.39299 -37.42393 -34.58428 -34.02429 -33.50969 -31.23183 -30.30199 -29.16275 -26.77187 -25.73171 -23.20425 -22.30338 -21.26818 -20.23533 -19.66981 -18.45642 -17.08741 -16.47649 -16.11398 -16.04965 -15.71931 -15.61744 -15.02985 -14.45072 -14.39286 -13.68952 -13.58187 -13.26748 -13.05336 -12.76758 -12.33270 -12.19607 -11.87780 -11.59784 -11.46423 -11.22414 -11.00756 -10.92174 -10.63716 -10.08408 -9.99270 -9.82239 -9.69465 -9.22693 -9.08000 -8.35077 -8.31908 -8.00246 -5.97089 -4.02044 1.30507 1.45846 1.75729 3.05593 3.11059 3.34138 3.38780 3.40215 3.49859 3.84221 4.46512 4.52400 4.71635 4.80658 4.94570 5.04942 5.11871 5.18111 5.34628 5.37031 5.37811 5.52887 5.57207 5.94390 6.13966 6.14821 6.20428 6.24133 6.28501 6.30659 6.44957 6.48246 6.82866 6.97032 7.42508 7.67696 7.72289 7.82356 8.04570 8.34952 8.59316 9.05749 9.61652 11.13760 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.024032 B = 0.003154 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.813876 B = 8875.927120 C = 9915.259361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.153 4.153 3 C 0.087 3.913 4 O -0.308 6.308 5 C 0.147 3.853 6 C -0.234 4.234 7 C -0.064 4.064 8 C -0.189 4.189 9 C 0.195 3.805 10 N -0.685 5.685 11 C 0.508 3.492 12 O -0.508 6.508 13 C -0.128 4.128 14 C 0.036 3.964 15 C -0.529 4.529 16 H 0.056 0.944 17 C 0.058 3.942 18 N -0.889 5.889 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.157 4.157 24 H 0.107 0.893 25 H 0.098 0.902 26 H 0.121 0.879 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.411 0.589 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.262 0.738 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.450 11.775 -9.435 23.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.171 4.171 3 C 0.012 3.988 4 O -0.221 6.221 5 C 0.101 3.899 6 C -0.254 4.254 7 C -0.082 4.082 8 C -0.210 4.210 9 C 0.100 3.900 10 N -0.332 5.332 11 C 0.297 3.703 12 O -0.381 6.381 13 C -0.168 4.168 14 C -0.001 4.001 15 C -0.567 4.567 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.527 5.527 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.178 4.178 24 H 0.125 0.875 25 H 0.117 0.883 26 H 0.139 0.861 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.246 0.754 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -18.543 10.587 -9.686 23.447 hybrid contribution 0.862 0.542 0.585 1.174 sum -17.681 11.129 -9.101 22.788 Atomic orbital electron populations 1.23855 0.95375 1.02462 0.99546 1.22726 0.95680 0.98041 1.00627 1.21808 0.87945 0.96683 0.92358 1.86129 1.41974 1.35729 1.58311 1.18756 0.90784 0.85662 0.94719 1.21125 1.04669 0.94663 1.04905 1.20628 0.93789 0.97210 0.96597 1.20812 1.01779 0.98953 0.99420 1.17501 0.87575 0.94061 0.90890 1.43956 1.31480 1.14880 1.42853 1.21891 0.84494 0.82259 0.81620 1.90692 1.68499 1.30186 1.48722 1.21915 0.92656 1.04980 0.97256 1.18919 0.95138 0.88090 0.97972 1.21158 1.11772 0.95030 1.28788 0.92587 1.25023 0.97703 0.95540 0.96087 1.69986 1.39831 0.99600 1.43319 0.86638 0.82957 0.77088 0.81154 1.20229 1.21274 1.20242 1.20547 0.94235 1.00824 1.02216 0.87456 0.88337 0.86066 0.91558 0.91029 0.85816 0.85656 0.85649 0.75351 0.89777 0.89773 0.95683 0.95705 0.92840 0.83270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 14.31 29.01 0.42 -0.84 16 2 C -0.15 -1.39 9.89 -36.03 -0.36 -1.74 16 3 C 0.09 0.87 5.15 36.01 0.19 1.05 16 4 O -0.31 -4.42 10.12 -19.41 -0.20 -4.61 16 5 C 0.15 2.15 6.68 -39.24 -0.26 1.89 16 6 C -0.23 -2.74 9.04 -39.39 -0.36 -3.09 16 7 C -0.06 -0.68 10.03 -39.63 -0.40 -1.08 16 8 C -0.19 -2.25 9.96 -39.37 -0.39 -2.64 16 9 C 0.20 2.92 6.30 -83.72 -0.53 2.39 16 10 N -0.69 -10.02 5.34 -9.88 -0.05 -10.07 16 11 C 0.51 9.73 7.67 -10.98 -0.08 9.64 16 12 O -0.51 -11.91 13.42 5.56 0.07 -11.83 16 13 C -0.13 -2.53 5.64 -27.88 -0.16 -2.69 16 14 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 15 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 16 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -27.41 13.29 55.43 0.74 -26.67 16 19 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C -0.16 -2.65 8.63 -39.25 -0.34 -2.99 16 24 H 0.11 0.63 8.06 -52.48 -0.42 0.21 16 25 H 0.10 0.58 7.90 -52.49 -0.41 0.17 16 26 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 27 H 0.07 0.55 7.38 -51.93 -0.38 0.17 16 28 H 0.07 0.63 7.66 -51.93 -0.40 0.23 16 29 H 0.12 1.11 6.29 -52.48 -0.33 0.78 16 30 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.41 4.38 8.82 -40.82 -0.36 4.02 16 33 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.15 2.93 6.22 -52.49 -0.33 2.60 16 LS Contribution 330.20 15.07 4.98 4.98 Total: -1.00 -34.56 330.20 -7.42 -41.98 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -5.13 Total: 2.50 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -2.80 Total: -12.87 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.68 Total: -36.74 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.12 Total: -16.45 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.56 -7.42 -41.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292469468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.662 kcal (2) G-P(sol) polarization free energy of solvation -34.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds