Wall clock time and date at job start Mon Mar 30 2020 01:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99989 * 2 1 4 4 O 1.42904 * 109.47140 * 135.00140 * 3 2 1 5 5 C 1.35894 * 116.99925 * 180.02562 * 4 3 2 6 6 C 1.38810 * 120.02168 * 0.02562 * 5 4 3 7 7 C 1.38175 * 120.08663 * 179.97438 * 6 5 4 8 8 C 1.38165 * 120.12046 * 359.74199 * 7 6 5 9 9 C 1.38887 * 120.04330 * 0.51091 * 8 7 6 10 10 N 1.39918 * 120.04633 * 179.76950 * 9 8 7 11 11 C 1.34780 * 120.00082 * 214.81619 * 10 9 8 12 12 O 1.21281 * 120.00158 * 355.37611 * 11 10 9 13 13 C 1.50702 * 119.99980 * 175.37734 * 11 10 9 14 14 C 1.53002 * 109.47116 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47116 * 180.02562 * 14 13 11 16 16 H 1.08003 * 119.99997 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99884 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00255 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99990 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47199 * 60.00328 * 19 17 15 21 21 H 1.48503 * 109.47186 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47095 * 300.00024 * 19 17 15 23 23 C 1.38586 * 120.02084 * 179.97438 * 5 4 3 24 24 H 1.08005 * 119.99944 * 179.97438 * 1 2 3 25 25 H 1.07996 * 120.00331 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99835 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47071 * 15.00098 * 3 2 1 28 28 H 1.08996 * 109.47573 * 255.00145 * 3 2 1 29 29 H 1.08004 * 119.95829 * 359.95089 * 6 5 4 30 30 H 1.07993 * 119.93899 * 179.97438 * 7 6 5 31 31 H 1.08002 * 119.97919 * 180.27790 * 8 7 6 32 32 H 0.97003 * 120.00278 * 34.81389 * 10 9 8 33 33 H 1.09002 * 109.47212 * 60.00356 * 13 11 10 34 34 H 1.08997 * 109.47229 * 300.00054 * 13 11 10 35 35 H 1.08997 * 109.47017 * 300.00063 * 14 13 11 36 36 H 1.08995 * 109.47263 * 59.99972 * 14 13 11 37 37 H 0.97007 * 120.00238 * 179.97438 * 18 17 15 38 38 H 1.07994 * 120.05649 * 0.04922 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9090 2.3453 1.0789 6 6 3.6574 3.4674 0.3015 7 6 4.4517 4.5908 0.4292 8 6 5.4953 4.6028 1.3346 9 6 5.7550 3.4811 2.1113 10 7 6.8148 3.4916 3.0247 11 6 7.5215 2.3663 3.2499 12 8 7.1874 1.3251 2.7252 13 6 8.7270 2.4017 4.1536 14 6 9.3425 1.0035 4.2378 15 6 10.5476 1.0387 5.1421 16 1 10.8450 1.9658 5.6096 17 6 11.2705 -0.1125 5.3725 18 7 10.9087 -1.2412 4.8027 19 14 12.7638 -0.0689 6.4939 20 1 12.3515 0.3732 7.8502 21 1 13.3613 -1.4260 6.5755 22 1 13.7660 0.8806 5.9470 23 6 4.9579 2.3519 1.9847 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5400 0.9352 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3855 2.1161 0.2660 28 1 2.4755 1.4868 -0.9926 29 1 2.8400 3.4622 -0.4044 30 1 4.2541 5.4623 -0.1771 31 1 6.1119 5.4838 1.4357 32 1 7.0410 4.3088 3.4960 33 1 8.4252 2.7267 5.1494 34 1 9.4624 3.0984 3.7514 35 1 8.6073 0.3064 4.6398 36 1 9.6444 0.6788 3.2421 37 1 11.4176 -2.0511 4.9646 38 1 5.1551 1.4798 2.5904 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292469468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:52 Heat of formation + Delta-G solvation = -57.547095 kcal Electronic energy + Delta-G solvation = -19853.119595 eV Core-core repulsion = 16660.317303 eV Total energy + Delta-G solvation = -3192.802292 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.69767 -40.61533 -38.54700 -35.73429 -35.55922 -34.90625 -33.12221 -31.38672 -30.34538 -27.82805 -27.37705 -24.61938 -23.56620 -22.63169 -21.31656 -20.81652 -19.53166 -18.86170 -17.76472 -17.23519 -17.15378 -16.98909 -16.77027 -16.45639 -16.34541 -15.34790 -15.07879 -14.65626 -14.48310 -14.22161 -14.10518 -13.89596 -13.53029 -13.27751 -12.78882 -12.74757 -12.52262 -12.51872 -12.33580 -11.93759 -11.87181 -11.65812 -11.33600 -11.23816 -10.73202 -10.56570 -10.47618 -9.45167 -9.04398 -8.18524 -6.33086 0.24075 0.45553 1.09782 1.42024 1.46808 1.54453 1.61119 2.01277 2.41270 2.48318 2.81112 3.14560 3.77701 3.93775 3.95454 4.02045 4.14772 4.25459 4.28297 4.38808 4.45089 4.51219 4.53453 4.59359 4.77004 4.93669 5.05007 5.29195 5.33410 5.37345 5.46828 5.49200 5.58365 5.60292 5.62978 5.83274 5.89488 6.15564 6.46157 6.47039 6.85192 7.19977 7.37416 8.94055 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.024032 B = 0.003154 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.813876 B = 8875.927120 C = 9915.259361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.186 4.186 3 C 0.082 3.918 4 O -0.340 6.340 5 C 0.130 3.870 6 C -0.224 4.224 7 C -0.053 4.053 8 C -0.178 4.178 9 C 0.171 3.829 10 N -0.661 5.661 11 C 0.509 3.491 12 O -0.564 6.564 13 C -0.115 4.115 14 C 0.041 3.959 15 C -0.544 4.544 16 H 0.079 0.921 17 C -0.008 4.008 18 N -0.939 5.939 19 Si 0.976 3.024 20 H -0.262 1.262 21 H -0.289 1.289 22 H -0.261 1.261 23 C -0.196 4.196 24 H 0.120 0.880 25 H 0.117 0.883 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.156 0.844 30 H 0.171 0.829 31 H 0.160 0.840 32 H 0.432 0.568 33 H 0.112 0.888 34 H 0.113 0.887 35 H -0.019 1.019 36 H -0.018 1.018 37 H 0.263 0.737 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.002 15.651 -9.803 26.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.204 4.204 3 C 0.008 3.992 4 O -0.254 6.254 5 C 0.084 3.916 6 C -0.243 4.243 7 C -0.072 4.072 8 C -0.198 4.198 9 C 0.076 3.924 10 N -0.309 5.309 11 C 0.299 3.701 12 O -0.442 6.442 13 C -0.155 4.155 14 C 0.003 3.997 15 C -0.581 4.581 16 H 0.097 0.903 17 C -0.206 4.206 18 N -0.579 5.579 19 Si 0.799 3.201 20 H -0.186 1.186 21 H -0.215 1.215 22 H -0.186 1.186 23 C -0.217 4.217 24 H 0.138 0.862 25 H 0.135 0.865 26 H 0.124 0.876 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.173 0.827 30 H 0.189 0.811 31 H 0.177 0.823 32 H 0.272 0.728 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.000 1.000 36 H 0.000 1.000 37 H 0.071 0.929 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -19.121 14.544 -10.048 26.041 hybrid contribution 0.857 -0.661 0.610 1.242 sum -18.264 13.884 -9.438 24.807 Atomic orbital electron populations 1.24116 0.94550 1.03978 0.96212 1.22718 0.96541 0.97405 1.03748 1.22083 0.87304 0.97790 0.92005 1.86097 1.43145 1.36400 1.59793 1.18919 0.90620 0.86932 0.95124 1.21518 1.05272 0.93533 1.04005 1.21199 0.92182 0.98014 0.95759 1.21189 1.02115 0.98440 0.98092 1.17728 0.87614 0.94863 0.92163 1.43520 1.30605 1.14190 1.42576 1.21719 0.84632 0.82671 0.81094 1.90694 1.69914 1.32545 1.51001 1.21671 0.93429 1.01024 0.99332 1.18702 0.94454 0.91416 0.95108 1.21684 1.11872 0.95972 1.28603 0.90265 1.26169 1.01537 0.95012 0.97869 1.70181 1.41715 1.00599 1.45397 0.85349 0.78419 0.77212 0.79113 1.18614 1.21481 1.18553 1.20443 0.96904 1.00511 1.03885 0.86178 0.86475 0.87555 0.89464 0.89999 0.82660 0.81145 0.82256 0.72817 0.87016 0.86881 1.00037 0.99968 0.92873 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 14.31 67.78 0.97 -0.97 16 2 C -0.19 -3.42 9.89 25.65 0.25 -3.17 16 3 C 0.08 1.60 5.15 71.24 0.37 1.97 16 4 O -0.34 -10.31 10.12 -92.36 -0.93 -11.24 16 5 C 0.13 3.90 6.68 22.49 0.15 4.05 16 6 C -0.22 -4.67 9.04 22.39 0.20 -4.47 16 7 C -0.05 -0.92 10.03 22.24 0.22 -0.70 16 8 C -0.18 -3.67 9.96 22.41 0.22 -3.45 16 9 C 0.17 5.08 6.30 38.14 0.24 5.32 16 10 N -0.66 -19.09 5.34 -303.55 -1.62 -20.71 16 11 C 0.51 20.31 7.67 87.66 0.67 20.98 16 12 O -0.56 -28.87 13.42 -3.03 -0.04 -28.91 16 13 C -0.12 -4.57 5.64 29.85 0.17 -4.40 16 14 C 0.04 2.30 4.26 29.85 0.13 2.42 16 15 C -0.54 -31.00 9.11 25.60 0.23 -30.76 16 16 H 0.08 4.05 7.74 -2.91 -0.02 4.03 16 17 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 18 N -0.94 -60.41 13.29 21.44 0.28 -60.13 16 19 Si 0.98 44.51 29.54 68.60 2.03 46.54 16 20 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 22 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 23 C -0.20 -7.07 8.63 22.49 0.19 -6.87 16 24 H 0.12 1.21 8.06 -2.91 -0.02 1.19 16 25 H 0.12 1.06 7.90 -2.91 -0.02 1.04 16 26 H 0.11 2.20 8.06 -2.91 -0.02 2.17 16 27 H 0.09 1.27 7.38 -2.39 -0.02 1.26 16 28 H 0.08 1.35 7.66 -2.39 -0.02 1.34 16 29 H 0.16 2.19 6.29 -2.91 -0.02 2.17 16 30 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 31 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.43 8.28 8.82 -92.71 -0.82 7.46 16 33 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 34 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 35 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 36 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 37 H 0.26 15.86 8.31 -92.70 -0.77 15.09 16 38 H 0.10 4.62 6.22 -2.91 -0.02 4.60 16 Total: -1.00 -83.25 330.20 4.45 -78.81 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.24 Total: 15.72 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 4.49 Total: -20.08 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -1.33 Total: -80.84 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -0.98 Total: -40.15 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -83.25 4.45 -78.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292469468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.258 kcal (2) G-P(sol) polarization free energy of solvation -83.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds