Wall clock time and date at job start Mon Mar 30 2020 02:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 115.55152 * 2 1 4 4 C 1.53001 * 117.50125 * 214.32564 * 2 1 3 5 5 C 1.53002 * 60.03435 * 252.50229 * 4 2 1 6 6 H 1.09004 * 117.49692 * 252.52519 * 5 4 2 7 7 C 1.52995 * 117.50163 * 107.49959 * 5 4 2 8 8 N 1.46494 * 109.47380 * 116.39033 * 7 5 4 9 9 C 1.34770 * 120.00596 * 180.02562 * 8 7 5 10 10 O 1.21593 * 119.99677 * 0.02562 * 9 8 7 11 11 C 1.47538 * 120.00500 * 179.97438 * 9 8 7 12 12 C 1.39666 * 120.19479 * 359.72715 * 11 9 8 13 13 C 1.37827 * 119.92034 * 179.74360 * 12 11 9 14 14 C 1.38573 * 120.32003 * 0.52989 * 13 12 11 15 15 C 1.38029 * 120.40145 * 359.74494 * 14 13 12 16 16 C 1.38827 * 120.07413 * 359.97438 * 15 14 13 17 17 O 1.35524 * 120.16285 * 180.02562 * 16 15 14 18 18 C 1.34813 * 116.99617 * 354.39097 * 17 16 15 19 19 H 1.07999 * 120.00471 * 5.05244 * 18 17 16 20 20 C 1.38702 * 119.99422 * 185.05736 * 18 17 16 21 21 N 1.31517 * 119.99782 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00109 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.47089 * 90.00573 * 22 20 18 24 24 H 1.48504 * 109.47086 * 210.00285 * 22 20 18 25 25 H 1.48497 * 109.47468 * 330.00334 * 22 20 18 26 26 H 1.09000 * 109.47100 * 154.27734 * 1 2 3 27 27 H 1.09004 * 109.47128 * 274.28537 * 1 2 3 28 28 H 1.09006 * 109.46857 * 34.28150 * 1 2 3 29 29 H 1.09005 * 117.49240 * 0.02562 * 4 2 1 30 30 H 1.08995 * 117.49573 * 144.99829 * 4 2 1 31 31 H 1.08999 * 109.47378 * 236.39214 * 7 5 4 32 32 H 1.09005 * 109.46813 * 356.39119 * 7 5 4 33 33 H 0.97009 * 119.99820 * 0.02562 * 8 7 5 34 34 H 1.08001 * 120.03865 * 0.02562 * 12 11 9 35 35 H 1.07995 * 119.83904 * 180.25556 * 13 12 11 36 36 H 1.08001 * 119.80268 * 179.76165 * 14 13 12 37 37 H 1.07997 * 119.96194 * 179.97438 * 15 14 13 38 38 H 0.97000 * 120.00307 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9835 0.0000 4 6 2.2365 -1.1208 -0.7653 5 6 2.2371 -1.1218 0.7647 6 1 3.1723 -0.8760 1.2678 7 6 1.3601 -2.1577 1.4709 8 7 2.2076 -3.0723 2.2399 9 6 1.6492 -4.0738 2.9480 10 8 0.4419 -4.2186 2.9481 11 6 2.5027 -4.9952 3.7221 12 6 3.8903 -4.8368 3.7194 13 6 4.6820 -5.6976 4.4488 14 6 4.1087 -6.7277 5.1772 15 6 2.7393 -6.8999 5.1847 16 6 1.9258 -6.0390 4.4606 17 8 0.5810 -6.2062 4.4670 18 6 0.1028 -7.2955 5.1012 19 1 0.7754 -7.9435 5.6435 20 6 -1.2532 -7.5842 5.0569 21 7 -1.7198 -8.6466 5.6759 22 14 -2.4166 -6.4631 4.1194 23 1 -2.5252 -6.9273 2.7130 24 1 -3.7575 -6.4970 4.7567 25 1 -1.8922 -5.0741 4.1431 26 1 -0.3633 -0.9258 -0.4460 27 1 -0.3633 0.0768 1.0248 28 1 -0.3633 0.8492 -0.5789 29 1 1.6112 -1.8579 -1.2691 30 1 3.1713 -0.8746 -1.2687 31 1 0.6688 -1.6504 2.1438 32 1 0.7960 -2.7226 0.7287 33 1 3.1708 -2.9570 2.2395 34 1 4.3422 -4.0379 3.1501 35 1 5.7545 -5.5713 4.4491 36 1 4.7373 -7.3996 5.7427 37 1 2.3001 -7.7054 5.7545 38 1 -2.6681 -8.8483 5.6453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299098151.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:49 Heat of formation + Delta-G solvation = -15.121843 kcal Electronic energy + Delta-G solvation = -20745.669692 eV Core-core repulsion = 17554.707096 eV Total energy + Delta-G solvation = -3190.962595 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.81496 -38.73606 -37.71265 -36.50485 -33.86950 -32.44241 -30.76273 -29.19510 -28.76550 -26.83779 -25.22681 -23.05989 -21.78270 -21.24511 -20.26836 -19.70969 -17.90165 -17.66970 -16.42762 -16.31895 -15.24439 -14.83640 -14.53480 -14.42180 -14.06260 -13.82789 -13.76024 -13.65760 -13.24695 -12.85036 -12.67679 -12.34410 -12.27171 -12.16102 -11.72222 -11.39489 -11.33988 -11.25165 -10.81867 -10.71409 -10.20510 -10.12900 -10.03994 -9.60298 -9.03282 -8.88297 -8.68636 -8.36450 -7.47097 -6.46382 -4.11361 1.58610 2.19538 3.31975 3.36338 3.38722 3.59134 3.67390 3.71419 4.36588 4.44081 4.53098 4.66607 4.67919 4.75158 5.07155 5.09965 5.13145 5.31041 5.40272 5.50491 5.60488 5.61107 5.64448 5.73204 5.81574 5.86052 5.94224 6.04659 6.07385 6.14494 6.38503 6.55937 6.80913 6.85002 7.01789 7.15408 7.48801 7.68591 7.95505 7.98210 8.87196 8.91216 9.52768 10.58766 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.015131 B = 0.005702 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.044035 B = 4909.099801 C = 6651.393111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.145 4.145 3 H 0.105 0.895 4 C -0.174 4.174 5 C -0.164 4.164 6 H 0.109 0.891 7 C 0.155 3.845 8 N -0.739 5.739 9 C 0.560 3.440 10 O -0.519 6.519 11 C -0.226 4.226 12 C -0.041 4.041 13 C -0.221 4.221 14 C -0.051 4.051 15 C -0.227 4.227 16 C 0.201 3.799 17 O -0.166 6.166 18 C -0.397 4.397 19 H 0.108 0.892 20 C 0.072 3.928 21 N -0.870 5.870 22 Si 0.900 3.100 23 H -0.274 1.274 24 H -0.286 1.286 25 H -0.238 1.238 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.394 0.606 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.138 0.862 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.266 13.657 -8.862 19.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.163 4.163 3 H 0.123 0.877 4 C -0.211 4.211 5 C -0.182 4.182 6 H 0.127 0.873 7 C 0.031 3.969 8 N -0.394 5.394 9 C 0.350 3.650 10 O -0.395 6.395 11 C -0.231 4.231 12 C -0.060 4.060 13 C -0.240 4.240 14 C -0.070 4.070 15 C -0.246 4.246 16 C 0.143 3.857 17 O -0.066 6.066 18 C -0.472 4.472 19 H 0.126 0.874 20 C -0.134 4.134 21 N -0.506 5.506 22 Si 0.725 3.275 23 H -0.200 1.200 24 H -0.212 1.212 25 H -0.161 1.161 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.229 0.771 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.156 0.844 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.916 13.533 -8.891 18.484 hybrid contribution 0.135 0.234 -0.246 0.366 sum 9.051 13.766 -9.137 18.839 Atomic orbital electron populations 1.21393 0.92632 1.02159 1.02313 1.22364 0.95652 0.94190 1.04122 0.87732 1.23224 1.02580 1.01605 0.93712 1.22567 1.01391 1.00048 0.94242 0.87336 1.20720 0.92253 0.89402 0.94485 1.45862 1.10101 1.31948 1.51527 1.18200 0.87933 0.80094 0.78809 1.90854 1.14245 1.71798 1.62638 1.18867 0.93041 1.02055 1.09147 1.20763 0.91493 0.97268 0.96431 1.20537 0.98787 0.99768 1.04954 1.20966 0.94250 0.95885 0.95864 1.21285 0.93663 1.03728 1.05932 1.19026 0.83971 0.91652 0.91013 1.83784 1.16007 1.41951 1.64830 1.20932 0.94306 1.01237 1.30696 0.87439 1.24490 0.96672 0.96102 0.96093 1.69637 1.15718 1.24746 1.40457 0.86203 0.78312 0.83605 0.79413 1.19957 1.21241 1.16115 0.92182 0.91803 0.92163 0.88487 0.88799 0.91399 0.91680 0.77113 0.86853 0.87013 0.86830 0.84418 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 9.20 37.16 0.34 -0.81 16 2 C -0.14 -1.26 6.41 -90.58 -0.58 -1.84 16 3 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.17 -1.53 9.82 -26.73 -0.26 -1.79 16 5 C -0.16 -1.61 5.85 -90.58 -0.53 -2.14 16 6 H 0.11 0.94 8.04 -51.93 -0.42 0.52 16 7 C 0.16 2.10 5.04 -4.05 -0.02 2.08 16 8 N -0.74 -11.17 5.51 -61.35 -0.34 -11.51 16 9 C 0.56 11.54 7.76 -12.47 -0.10 11.45 16 10 O -0.52 -13.15 15.17 -16.57 -0.25 -13.40 16 11 C -0.23 -4.65 5.89 -104.81 -0.62 -5.27 16 12 C -0.04 -0.65 9.53 -39.20 -0.37 -1.03 16 13 C -0.22 -3.44 10.03 -39.61 -0.40 -3.84 16 14 C -0.05 -0.88 10.03 -39.53 -0.40 -1.27 16 15 C -0.23 -4.83 9.16 -39.44 -0.36 -5.19 16 16 C 0.20 4.80 6.66 -38.60 -0.26 4.55 16 17 O -0.17 -4.61 6.67 -21.06 -0.14 -4.75 16 18 C -0.40 -11.45 9.95 30.90 0.31 -11.14 16 19 H 0.11 3.08 5.44 -52.49 -0.29 2.80 16 20 C 0.07 2.08 5.49 -17.51 -0.10 1.99 16 21 N -0.87 -25.44 13.96 55.48 0.77 -24.66 16 22 Si 0.90 23.42 28.62 -169.99 -4.86 18.56 16 23 H -0.27 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.24 -6.55 7.11 56.52 0.40 -6.15 16 26 H 0.06 0.57 7.90 -51.93 -0.41 0.16 16 27 H 0.06 0.61 7.84 -51.93 -0.41 0.20 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.10 0.90 7.94 -51.93 -0.41 0.49 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.00 7.77 -51.93 -0.40 0.59 16 32 H 0.06 0.96 7.88 -51.93 -0.41 0.55 16 33 H 0.39 4.68 6.43 -40.82 -0.26 4.41 16 34 H 0.11 1.36 6.40 -52.49 -0.34 1.03 16 35 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.14 3.03 5.64 -52.49 -0.30 2.74 16 38 H 0.28 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 322.18 15.07 4.86 4.86 Total: -1.00 -32.91 322.18 -8.19 -41.10 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -4.89 Total: 4.07 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -3.34 Total: -14.26 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.44 Total: -36.17 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.39 Total: -18.15 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -4.86 Total: 18.56 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.91 -8.19 -41.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299098151.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.979 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds