Wall clock time and date at job start Mon Mar 30 2020 02:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 115.55152 * 2 1 4 4 C 1.53001 * 117.50125 * 214.32564 * 2 1 3 5 5 C 1.53002 * 60.03435 * 252.50229 * 4 2 1 6 6 H 1.09004 * 117.49692 * 252.52519 * 5 4 2 7 7 C 1.52995 * 117.50163 * 107.49959 * 5 4 2 8 8 N 1.46494 * 109.47380 * 116.39033 * 7 5 4 9 9 C 1.34770 * 120.00596 * 180.02562 * 8 7 5 10 10 O 1.21593 * 119.99677 * 0.02562 * 9 8 7 11 11 C 1.47538 * 120.00500 * 179.97438 * 9 8 7 12 12 C 1.39666 * 120.19479 * 359.72715 * 11 9 8 13 13 C 1.37827 * 119.92034 * 179.74360 * 12 11 9 14 14 C 1.38573 * 120.32003 * 0.52989 * 13 12 11 15 15 C 1.38029 * 120.40145 * 359.74494 * 14 13 12 16 16 C 1.38827 * 120.07413 * 359.97438 * 15 14 13 17 17 O 1.35524 * 120.16285 * 180.02562 * 16 15 14 18 18 C 1.34813 * 116.99617 * 354.39097 * 17 16 15 19 19 H 1.07999 * 120.00471 * 5.05244 * 18 17 16 20 20 C 1.38702 * 119.99422 * 185.05736 * 18 17 16 21 21 N 1.31517 * 119.99782 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00109 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.47089 * 90.00573 * 22 20 18 24 24 H 1.48504 * 109.47086 * 210.00285 * 22 20 18 25 25 H 1.48497 * 109.47468 * 330.00334 * 22 20 18 26 26 H 1.09000 * 109.47100 * 154.27734 * 1 2 3 27 27 H 1.09004 * 109.47128 * 274.28537 * 1 2 3 28 28 H 1.09006 * 109.46857 * 34.28150 * 1 2 3 29 29 H 1.09005 * 117.49240 * 0.02562 * 4 2 1 30 30 H 1.08995 * 117.49573 * 144.99829 * 4 2 1 31 31 H 1.08999 * 109.47378 * 236.39214 * 7 5 4 32 32 H 1.09005 * 109.46813 * 356.39119 * 7 5 4 33 33 H 0.97009 * 119.99820 * 0.02562 * 8 7 5 34 34 H 1.08001 * 120.03865 * 0.02562 * 12 11 9 35 35 H 1.07995 * 119.83904 * 180.25556 * 13 12 11 36 36 H 1.08001 * 119.80268 * 179.76165 * 14 13 12 37 37 H 1.07997 * 119.96194 * 179.97438 * 15 14 13 38 38 H 0.97000 * 120.00307 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9835 0.0000 4 6 2.2365 -1.1208 -0.7653 5 6 2.2371 -1.1218 0.7647 6 1 3.1723 -0.8760 1.2678 7 6 1.3601 -2.1577 1.4709 8 7 2.2076 -3.0723 2.2399 9 6 1.6492 -4.0738 2.9480 10 8 0.4419 -4.2186 2.9481 11 6 2.5027 -4.9952 3.7221 12 6 3.8903 -4.8368 3.7194 13 6 4.6820 -5.6976 4.4488 14 6 4.1087 -6.7277 5.1772 15 6 2.7393 -6.8999 5.1847 16 6 1.9258 -6.0390 4.4606 17 8 0.5810 -6.2062 4.4670 18 6 0.1028 -7.2955 5.1012 19 1 0.7754 -7.9435 5.6435 20 6 -1.2532 -7.5842 5.0569 21 7 -1.7198 -8.6466 5.6759 22 14 -2.4166 -6.4631 4.1194 23 1 -2.5252 -6.9273 2.7130 24 1 -3.7575 -6.4970 4.7567 25 1 -1.8922 -5.0741 4.1431 26 1 -0.3633 -0.9258 -0.4460 27 1 -0.3633 0.0768 1.0248 28 1 -0.3633 0.8492 -0.5789 29 1 1.6112 -1.8579 -1.2691 30 1 3.1713 -0.8746 -1.2687 31 1 0.6688 -1.6504 2.1438 32 1 0.7960 -2.7226 0.7287 33 1 3.1708 -2.9570 2.2395 34 1 4.3422 -4.0379 3.1501 35 1 5.7545 -5.5713 4.4491 36 1 4.7373 -7.3996 5.7427 37 1 2.3001 -7.7054 5.7545 38 1 -2.6681 -8.8483 5.6453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299098151.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:49 Heat of formation + Delta-G solvation = -36.240143 kcal Electronic energy + Delta-G solvation = -20746.585450 eV Core-core repulsion = 17554.707096 eV Total energy + Delta-G solvation = -3191.878354 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.41788 -40.10571 -38.88571 -38.14260 -35.29970 -34.52178 -32.25773 -30.79786 -29.56694 -28.06597 -27.14955 -24.54357 -22.97579 -22.45017 -21.68152 -20.75758 -19.80713 -19.24657 -17.92643 -17.50850 -16.70145 -16.40754 -16.03844 -15.92143 -15.65000 -15.47664 -15.29431 -14.67249 -14.47546 -14.27775 -14.12632 -14.03598 -13.83814 -13.17915 -13.08326 -12.84903 -12.59586 -12.45825 -12.37227 -12.13672 -12.03353 -11.54850 -11.00379 -10.98433 -10.97607 -10.59849 -10.12058 -9.81190 -9.14976 -8.59028 -6.27599 0.05047 0.64862 1.22757 1.28165 1.56551 2.01640 2.17945 2.28508 2.74937 2.83872 3.02026 3.16541 3.65030 3.85879 3.91115 3.96922 4.03600 4.25106 4.26782 4.43754 4.48126 4.55234 4.63961 4.71997 4.81373 4.90736 4.90996 4.98323 5.06797 5.13181 5.23413 5.28591 5.41664 5.47392 5.52658 5.61781 5.69401 5.83353 6.15682 6.64460 6.78314 7.38694 7.58494 8.51543 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.015131 B = 0.005702 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.044035 B = 4909.099801 C = 6651.393111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.139 4.139 3 H 0.127 0.873 4 C -0.168 4.168 5 C -0.167 4.167 6 H 0.132 0.868 7 C 0.154 3.846 8 N -0.712 5.712 9 C 0.552 3.448 10 O -0.577 6.577 11 C -0.235 4.235 12 C -0.029 4.029 13 C -0.189 4.189 14 C -0.042 4.042 15 C -0.251 4.251 16 C 0.160 3.840 17 O -0.211 6.211 18 C -0.404 4.404 19 H 0.093 0.907 20 C 0.027 3.973 21 N -0.911 5.911 22 Si 0.954 3.046 23 H -0.277 1.277 24 H -0.264 1.264 25 H -0.268 1.268 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.414 0.586 34 H 0.167 0.833 35 H 0.168 0.832 36 H 0.152 0.848 37 H 0.115 0.885 38 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.702 16.213 -10.299 24.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.158 4.158 3 H 0.145 0.855 4 C -0.205 4.205 5 C -0.186 4.186 6 H 0.150 0.850 7 C 0.031 3.969 8 N -0.367 5.367 9 C 0.342 3.658 10 O -0.457 6.457 11 C -0.239 4.239 12 C -0.048 4.048 13 C -0.207 4.207 14 C -0.060 4.060 15 C -0.270 4.270 16 C 0.107 3.893 17 O -0.115 6.115 18 C -0.480 4.480 19 H 0.110 0.890 20 C -0.173 4.173 21 N -0.551 5.551 22 Si 0.778 3.222 23 H -0.202 1.202 24 H -0.189 1.189 25 H -0.192 1.192 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.134 0.866 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.253 0.747 34 H 0.184 0.816 35 H 0.186 0.814 36 H 0.169 0.831 37 H 0.133 0.867 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 13.442 16.130 -10.351 23.409 hybrid contribution -0.756 -0.376 0.115 0.852 sum 12.686 15.754 -10.236 22.670 Atomic orbital electron populations 1.21427 0.93482 1.02229 1.01817 1.22479 0.95133 0.94973 1.03176 0.85545 1.23289 1.03322 1.01133 0.92734 1.22478 1.01702 0.99572 0.94824 0.85020 1.20764 0.92756 0.89662 0.93757 1.45631 1.11276 1.30176 1.49602 1.18448 0.87289 0.81001 0.79093 1.90838 1.16749 1.73425 1.64665 1.19302 0.95256 1.00968 1.08397 1.21366 0.89133 0.98343 0.95935 1.21248 1.01447 0.96882 1.01094 1.21460 0.92446 0.96721 0.95405 1.21332 0.95742 1.03439 1.06504 1.19788 0.83353 0.93575 0.92577 1.83773 1.18237 1.42130 1.67334 1.20914 0.94406 1.01884 1.30773 0.88990 1.25021 0.97764 0.97273 0.97270 1.69678 1.16201 1.26228 1.42945 0.85434 0.77806 0.80439 0.78481 1.20245 1.18854 1.19231 0.93487 0.92875 0.90550 0.89596 0.86565 0.93049 0.93458 0.74725 0.81563 0.81427 0.83069 0.86718 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 9.20 71.98 0.66 -1.59 16 2 C -0.14 -2.03 6.41 -10.77 -0.07 -2.10 16 3 H 0.13 1.36 8.14 -2.38 -0.02 1.34 16 4 C -0.17 -2.43 9.82 30.60 0.30 -2.13 16 5 C -0.17 -2.78 5.85 -10.77 -0.06 -2.84 16 6 H 0.13 1.62 8.04 -2.39 -0.02 1.60 16 7 C 0.15 4.05 5.04 86.38 0.44 4.48 16 8 N -0.71 -20.07 5.51 -466.29 -2.57 -22.64 16 9 C 0.55 22.75 7.76 86.70 0.67 23.42 16 10 O -0.58 -30.62 15.17 16.89 0.26 -30.37 16 11 C -0.23 -9.37 5.89 -19.99 -0.12 -9.49 16 12 C -0.03 -0.79 9.53 22.52 0.21 -0.58 16 13 C -0.19 -4.62 10.03 22.25 0.22 -4.40 16 14 C -0.04 -1.29 10.03 22.30 0.22 -1.07 16 15 C -0.25 -10.79 9.16 22.36 0.20 -10.58 16 16 C 0.16 7.88 6.66 22.91 0.15 8.04 16 17 O -0.21 -12.51 6.67 0.81 0.01 -12.50 16 18 C -0.40 -25.04 9.95 67.93 0.68 -24.36 16 19 H 0.09 5.75 5.44 -2.91 -0.02 5.73 16 20 C 0.03 1.66 5.49 84.85 0.47 2.13 16 21 N -0.91 -56.28 13.96 21.62 0.30 -55.98 16 22 Si 0.95 51.70 28.62 68.60 1.96 53.67 16 23 H -0.28 -14.80 7.11 99.48 0.71 -14.10 16 24 H -0.26 -13.02 7.11 99.48 0.71 -12.32 16 25 H -0.27 -15.65 7.11 99.48 0.71 -14.94 16 26 H 0.05 0.90 7.90 -2.39 -0.02 0.88 16 27 H 0.05 1.01 7.84 -2.38 -0.02 0.99 16 28 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.09 1.46 7.94 -2.38 -0.02 1.44 16 30 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 1.53 7.77 -2.39 -0.02 1.51 16 32 H 0.05 1.42 7.88 -2.38 -0.02 1.40 16 33 H 0.41 7.96 6.43 -92.70 -0.60 7.36 16 34 H 0.17 2.72 6.40 -2.91 -0.02 2.70 16 35 H 0.17 2.51 8.06 -2.91 -0.02 2.48 16 36 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 37 H 0.11 5.40 5.64 -2.91 -0.02 5.38 16 38 H 0.29 16.26 8.31 -92.71 -0.77 15.49 16 Total: -1.00 -80.66 322.18 4.43 -76.24 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.48 Total: 12.65 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: 3.98 Total: -21.06 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -2.27 Total: -78.62 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: 0.26 Total: -42.87 kcal Atomic # 14 Polarization: 51.70 SS G_CDS: 1.96 Total: 53.67 kcal Total: -80.66 4.43 -76.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299098151.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.997 kcal (2) G-P(sol) polarization free energy of solvation -80.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds