Wall clock time and date at job start Mon Mar 30 2020 02:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.32623 * 2 1 4 4 O 1.44419 * 110.37536 * 237.63262 * 2 1 3 5 5 C 1.44425 * 105.27470 * 200.65447 * 4 2 1 6 6 C 1.54475 * 104.80365 * 40.51202 * 5 4 2 7 7 C 1.54473 * 110.37252 * 122.24475 * 2 1 3 8 8 H 1.09004 * 110.51485 * 261.59437 * 7 2 1 9 9 C 1.50706 * 110.51179 * 24.16894 * 7 2 1 10 10 O 1.21293 * 119.99713 * 82.24939 * 9 7 2 11 11 N 1.34768 * 119.99994 * 262.24528 * 9 7 2 12 12 C 1.39936 * 119.99947 * 184.78459 * 11 9 7 13 13 C 1.39292 * 119.94801 * 213.48543 * 12 11 9 14 14 C 1.38484 * 120.42817 * 180.02562 * 13 12 11 15 15 C 1.37691 * 120.32504 * 359.69492 * 14 13 12 16 16 C 1.40741 * 119.87808 * 0.55580 * 15 14 13 17 17 C 1.41411 * 120.20496 * 179.74270 * 16 15 14 18 18 H 1.08002 * 119.99534 * 152.96700 * 17 16 15 19 19 C 1.39933 * 120.00338 * 332.96178 * 17 16 15 20 20 N 1.30830 * 119.99831 * 330.46438 * 19 17 16 21 21 Si 1.86799 * 119.99650 * 150.45414 * 19 17 16 22 22 H 1.48503 * 109.46558 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.46904 * 60.00858 * 21 19 17 24 24 H 1.48494 * 109.47388 * 300.00680 * 21 19 17 25 25 C 1.38243 * 119.94669 * 33.50488 * 12 11 9 26 26 H 1.08994 * 109.47192 * 294.87909 * 1 2 3 27 27 H 1.08996 * 109.47216 * 54.88532 * 1 2 3 28 28 H 1.09001 * 109.46636 * 174.87931 * 1 2 3 29 29 H 1.09001 * 110.36831 * 159.33776 * 5 4 2 30 30 H 1.08994 * 110.36864 * 281.56466 * 5 4 2 31 31 H 1.09000 * 110.50862 * 217.37676 * 6 5 4 32 32 H 1.08994 * 110.51519 * 94.66471 * 6 5 4 33 33 H 0.96995 * 120.00106 * 4.78822 * 11 9 7 34 34 H 1.07999 * 119.78932 * 0.02562 * 13 12 11 35 35 H 1.08005 * 119.84254 * 179.97438 * 14 13 12 36 36 H 1.07999 * 120.06178 * 180.27813 * 15 14 13 37 37 H 0.96997 * 120.00060 * 353.57542 * 20 19 17 38 38 H 1.07999 * 120.16280 * 0.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0329 -0.7248 -1.1435 5 6 3.3875 -1.0878 -0.7983 6 6 3.3179 -1.5048 0.6875 7 6 2.0678 -0.7726 1.2248 8 1 2.3407 -0.0818 2.0226 9 6 1.0444 -1.7647 1.7143 10 8 0.9435 -2.8472 1.1764 11 7 0.2415 -1.4492 2.7497 12 6 -0.6390 -2.4049 3.2688 13 6 -1.8736 -2.0091 3.7781 14 6 -2.7523 -2.9464 4.2947 15 6 -2.4174 -4.2819 4.3049 16 6 -1.1712 -4.6961 3.7986 17 6 -0.8179 -6.0653 3.8107 18 1 -0.1231 -6.4501 3.0788 19 6 -1.3683 -6.9216 4.7709 20 7 -1.7088 -6.4552 5.9448 21 14 -1.6172 -8.7303 4.3762 22 1 -2.2119 -9.4160 5.5515 23 1 -0.3077 -9.3507 4.0509 24 1 -2.5300 -8.8621 3.2124 25 6 -0.2820 -3.7404 3.2759 26 1 -0.3633 0.4323 0.9322 27 1 -0.3633 0.5911 -0.8406 28 1 -0.3633 -1.0236 -0.0917 29 1 3.7242 -1.9236 -1.4116 30 1 4.0528 -0.2337 -0.9237 31 1 4.2110 -1.1758 1.2187 32 1 3.1957 -2.5843 0.7759 33 1 0.2739 -0.5597 3.1350 34 1 -2.1473 -0.9644 3.7700 35 1 -3.7070 -2.6289 4.6875 36 1 -3.1078 -5.0098 4.7047 37 1 -1.4951 -5.5397 6.1836 38 1 0.6753 -4.0483 2.8819 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313434350.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:47 Heat of formation + Delta-G solvation = -72.170253 kcal Electronic energy + Delta-G solvation = -21221.907703 eV Core-core repulsion = 18028.471303 eV Total energy + Delta-G solvation = -3193.436400 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.63491 -38.71334 -37.15184 -34.64228 -33.22398 -32.40789 -31.58552 -29.70690 -28.30487 -26.34580 -25.06876 -22.96269 -22.18935 -21.23826 -20.58926 -19.36502 -18.13210 -17.21020 -16.46597 -15.82819 -15.61920 -15.31109 -14.93155 -14.57269 -14.07401 -13.75183 -13.61902 -12.96394 -12.84591 -12.44976 -12.32961 -12.19637 -11.94318 -11.83529 -11.57148 -11.29152 -11.12843 -11.02591 -11.01141 -10.54427 -10.39122 -10.30263 -9.88413 -9.70203 -9.36106 -9.01925 -8.89756 -7.64118 -7.23372 -7.01508 -4.39896 2.46757 2.82512 3.13949 3.20212 3.31681 3.40965 3.51594 3.77076 4.05957 4.37095 4.55560 4.59413 4.78855 4.93807 5.02645 5.20579 5.25859 5.31946 5.45400 5.52785 5.66564 5.73080 5.81886 6.03341 6.11277 6.16463 6.30341 6.63371 6.72708 6.85924 6.92082 6.95435 7.41732 7.56761 7.72661 7.81956 7.90014 8.10346 8.21080 8.30328 8.67178 8.81214 8.92499 10.06225 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.025074 B = 0.004612 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.426669 B = 6069.928419 C = 6785.734016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.090 3.910 3 H 0.078 0.922 4 O -0.364 6.364 5 C 0.049 3.951 6 C -0.143 4.143 7 C -0.143 4.143 8 H 0.101 0.899 9 C 0.518 3.482 10 O -0.507 6.507 11 N -0.669 5.669 12 C 0.164 3.836 13 C -0.277 4.277 14 C -0.071 4.071 15 C -0.227 4.227 16 C 0.109 3.891 17 C -0.524 4.524 18 H 0.076 0.924 19 C 0.044 3.956 20 N -0.792 5.792 21 Si 1.062 2.938 22 H -0.274 1.274 23 H -0.276 1.276 24 H -0.274 1.274 25 C -0.215 4.215 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.397 0.603 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.297 0.703 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.333 12.009 -6.173 15.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.031 3.969 3 H 0.096 0.904 4 O -0.283 6.283 5 C -0.028 4.028 6 C -0.180 4.180 7 C -0.165 4.165 8 H 0.119 0.881 9 C 0.304 3.696 10 O -0.381 6.381 11 N -0.313 5.313 12 C 0.072 3.928 13 C -0.298 4.298 14 C -0.090 4.090 15 C -0.247 4.247 16 C 0.106 3.894 17 C -0.552 4.552 18 H 0.094 0.906 19 C -0.179 4.179 20 N -0.414 5.414 21 Si 0.885 3.115 22 H -0.199 1.199 23 H -0.201 1.201 24 H -0.199 1.199 25 C -0.236 4.236 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.231 0.769 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.564 9.782 -6.114 13.272 hybrid contribution 0.771 2.141 -0.114 2.279 sum 7.335 11.923 -6.229 15.322 Atomic orbital electron populations 1.21958 0.92784 1.04227 1.02564 1.22838 0.95780 0.94577 0.83660 0.90439 1.89186 1.27136 1.74404 1.37568 1.23368 0.84558 0.99740 0.95118 1.22951 0.95956 1.03165 0.95977 1.22819 0.95966 0.97884 0.99862 0.88119 1.20137 0.81813 0.88118 0.79543 1.90764 1.68411 1.23475 1.55442 1.43554 1.39367 1.15129 1.33267 1.17481 0.89184 0.88706 0.97422 1.19963 0.95450 0.97715 1.16664 1.20378 0.97038 0.93401 0.98166 1.21104 0.97715 0.94672 1.11211 1.17524 0.90088 0.92808 0.89009 1.20522 1.25925 0.93357 1.15412 0.90568 1.26989 0.91202 1.07563 0.92103 1.70454 1.31815 1.20502 1.18626 0.83696 0.77915 0.72846 0.77008 1.19910 1.20119 1.19922 1.20940 1.00456 0.90597 1.11604 0.90951 0.91472 0.90755 0.88842 0.92337 0.90052 0.88756 0.76887 0.89154 0.88915 0.87963 0.88987 0.87556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 8.58 37.16 0.32 -1.70 16 2 C 0.09 1.08 3.83 -25.96 -0.10 0.98 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 4 O -0.36 -5.20 11.34 -35.23 -0.40 -5.60 16 5 C 0.05 0.54 7.63 37.93 0.29 0.83 16 6 C -0.14 -1.68 6.59 -25.16 -0.17 -1.85 16 7 C -0.14 -1.79 3.42 -90.20 -0.31 -2.09 16 8 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 9 C 0.52 9.10 4.50 -10.99 -0.05 9.05 16 10 O -0.51 -11.43 13.40 5.55 0.07 -11.35 16 11 N -0.67 -11.64 5.10 -9.91 -0.05 -11.69 16 12 C 0.16 3.68 6.27 -83.76 -0.53 3.15 16 13 C -0.28 -6.01 9.97 -39.10 -0.39 -6.40 16 14 C -0.07 -1.63 10.02 -39.69 -0.40 -2.03 16 15 C -0.23 -5.92 8.15 -38.84 -0.32 -6.24 16 16 C 0.11 3.01 5.23 -106.85 -0.56 2.45 16 17 C -0.52 -14.57 8.93 -37.74 -0.34 -14.91 16 18 H 0.08 2.12 7.99 -52.49 -0.42 1.70 16 19 C 0.04 1.14 4.81 -17.34 -0.08 1.06 16 20 N -0.79 -21.26 12.43 55.55 0.69 -20.57 16 21 Si 1.06 22.23 30.02 -169.99 -5.10 17.13 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 C -0.21 -5.59 8.39 -38.68 -0.32 -5.92 16 26 H 0.07 0.81 7.91 -51.93 -0.41 0.40 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 1.24 7.07 -51.93 -0.37 0.87 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.38 6.99 -51.93 -0.36 1.02 16 33 H 0.40 5.26 8.82 -40.82 -0.36 4.90 16 34 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.09 1.88 8.06 -52.48 -0.42 1.45 16 36 H 0.10 2.73 6.78 -52.49 -0.36 2.37 16 37 H 0.30 8.18 7.15 -40.82 -0.29 7.88 16 38 H 0.11 2.88 6.40 -52.49 -0.34 2.55 16 LS Contribution 314.02 15.07 4.73 4.73 Total: -1.00 -31.95 314.02 -8.09 -40.04 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -5.08 Total: 10.93 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -2.95 Total: -23.62 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.64 Total: -32.25 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.33 Total: -16.96 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.10 Total: 17.13 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.95 -8.09 -40.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313434350.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.130 kcal (2) G-P(sol) polarization free energy of solvation -31.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds