Wall clock time and date at job start Mon Mar 30 2020 02:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.32623 * 2 1 4 4 O 1.44419 * 110.37536 * 237.63262 * 2 1 3 5 5 C 1.44425 * 105.27470 * 200.65447 * 4 2 1 6 6 C 1.54475 * 104.80365 * 40.51202 * 5 4 2 7 7 C 1.54473 * 110.37252 * 122.24475 * 2 1 3 8 8 H 1.09004 * 110.51485 * 261.59437 * 7 2 1 9 9 C 1.50706 * 110.51179 * 24.16894 * 7 2 1 10 10 O 1.21293 * 119.99713 * 82.24939 * 9 7 2 11 11 N 1.34768 * 119.99994 * 262.24528 * 9 7 2 12 12 C 1.39936 * 119.99947 * 184.78459 * 11 9 7 13 13 C 1.39292 * 119.94801 * 213.48543 * 12 11 9 14 14 C 1.38484 * 120.42817 * 180.02562 * 13 12 11 15 15 C 1.37691 * 120.32504 * 359.69492 * 14 13 12 16 16 C 1.40741 * 119.87808 * 0.55580 * 15 14 13 17 17 C 1.41411 * 120.20496 * 179.74270 * 16 15 14 18 18 H 1.08002 * 119.99534 * 152.96700 * 17 16 15 19 19 C 1.39933 * 120.00338 * 332.96178 * 17 16 15 20 20 N 1.30830 * 119.99831 * 330.46438 * 19 17 16 21 21 Si 1.86799 * 119.99650 * 150.45414 * 19 17 16 22 22 H 1.48503 * 109.46558 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.46904 * 60.00858 * 21 19 17 24 24 H 1.48494 * 109.47388 * 300.00680 * 21 19 17 25 25 C 1.38243 * 119.94669 * 33.50488 * 12 11 9 26 26 H 1.08994 * 109.47192 * 294.87909 * 1 2 3 27 27 H 1.08996 * 109.47216 * 54.88532 * 1 2 3 28 28 H 1.09001 * 109.46636 * 174.87931 * 1 2 3 29 29 H 1.09001 * 110.36831 * 159.33776 * 5 4 2 30 30 H 1.08994 * 110.36864 * 281.56466 * 5 4 2 31 31 H 1.09000 * 110.50862 * 217.37676 * 6 5 4 32 32 H 1.08994 * 110.51519 * 94.66471 * 6 5 4 33 33 H 0.96995 * 120.00106 * 4.78822 * 11 9 7 34 34 H 1.07999 * 119.78932 * 0.02562 * 13 12 11 35 35 H 1.08005 * 119.84254 * 179.97438 * 14 13 12 36 36 H 1.07999 * 120.06178 * 180.27813 * 15 14 13 37 37 H 0.96997 * 120.00060 * 353.57542 * 20 19 17 38 38 H 1.07999 * 120.16280 * 0.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0329 -0.7248 -1.1435 5 6 3.3875 -1.0878 -0.7983 6 6 3.3179 -1.5048 0.6875 7 6 2.0678 -0.7726 1.2248 8 1 2.3407 -0.0818 2.0226 9 6 1.0444 -1.7647 1.7143 10 8 0.9435 -2.8472 1.1764 11 7 0.2415 -1.4492 2.7497 12 6 -0.6390 -2.4049 3.2688 13 6 -1.8736 -2.0091 3.7781 14 6 -2.7523 -2.9464 4.2947 15 6 -2.4174 -4.2819 4.3049 16 6 -1.1712 -4.6961 3.7986 17 6 -0.8179 -6.0653 3.8107 18 1 -0.1231 -6.4501 3.0788 19 6 -1.3683 -6.9216 4.7709 20 7 -1.7088 -6.4552 5.9448 21 14 -1.6172 -8.7303 4.3762 22 1 -2.2119 -9.4160 5.5515 23 1 -0.3077 -9.3507 4.0509 24 1 -2.5300 -8.8621 3.2124 25 6 -0.2820 -3.7404 3.2759 26 1 -0.3633 0.4323 0.9322 27 1 -0.3633 0.5911 -0.8406 28 1 -0.3633 -1.0236 -0.0917 29 1 3.7242 -1.9236 -1.4116 30 1 4.0528 -0.2337 -0.9237 31 1 4.2110 -1.1758 1.2187 32 1 3.1957 -2.5843 0.7759 33 1 0.2739 -0.5597 3.1350 34 1 -2.1473 -0.9644 3.7700 35 1 -3.7070 -2.6289 4.6875 36 1 -3.1078 -5.0098 4.7047 37 1 -1.4951 -5.5397 6.1836 38 1 0.6753 -4.0483 2.8819 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313434350.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:47 Heat of formation + Delta-G solvation = -93.882749 kcal Electronic energy + Delta-G solvation = -21222.849227 eV Core-core repulsion = 18028.471303 eV Total energy + Delta-G solvation = -3194.377925 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.91286 -40.09629 -38.84661 -36.42686 -34.96932 -33.55495 -32.51471 -31.66679 -30.04433 -27.40557 -27.06577 -24.35350 -23.11043 -23.05078 -22.24526 -20.77062 -19.99162 -18.40235 -17.80579 -17.32260 -16.80371 -16.56174 -16.35448 -16.20733 -15.74466 -15.45977 -15.10808 -14.56277 -14.18026 -13.97369 -13.79651 -13.46567 -13.37782 -13.28524 -12.93409 -12.80393 -12.37787 -12.35163 -12.20525 -12.00149 -11.97809 -11.92441 -11.56356 -11.12185 -10.85813 -10.82939 -10.59005 -9.63568 -9.26259 -8.86641 -6.49866 0.70408 0.90216 1.46457 1.54279 1.70428 1.78038 2.12561 2.29885 2.62241 2.87887 3.36295 3.51356 3.57898 3.82119 4.07022 4.17063 4.28919 4.31263 4.33166 4.43169 4.52831 4.58516 4.76323 4.81262 4.85577 4.89004 4.94824 5.03384 5.07995 5.09933 5.15825 5.51852 5.65292 5.75239 5.81799 5.86626 5.88330 6.24428 6.35919 6.57717 6.79221 6.88540 7.27228 7.98438 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.025074 B = 0.004612 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.426669 B = 6069.928419 C = 6785.734016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.090 3.910 3 H 0.125 0.875 4 O -0.400 6.400 5 C 0.047 3.953 6 C -0.145 4.145 7 C -0.136 4.136 8 H 0.149 0.851 9 C 0.514 3.486 10 O -0.566 6.566 11 N -0.657 5.657 12 C 0.172 3.828 13 C -0.258 4.258 14 C -0.070 4.070 15 C -0.247 4.247 16 C 0.081 3.919 17 C -0.570 4.570 18 H 0.055 0.945 19 C 0.013 3.987 20 N -0.806 5.806 21 Si 1.112 2.888 22 H -0.262 1.262 23 H -0.262 1.262 24 H -0.267 1.267 25 C -0.243 4.243 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.024 0.976 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.052 0.948 33 H 0.423 0.577 34 H 0.138 0.862 35 H 0.128 0.872 36 H 0.087 0.913 37 H 0.282 0.718 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.766 15.381 -6.163 18.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.032 3.968 3 H 0.143 0.857 4 O -0.320 6.320 5 C -0.029 4.029 6 C -0.183 4.183 7 C -0.157 4.157 8 H 0.166 0.834 9 C 0.303 3.697 10 O -0.443 6.443 11 N -0.303 5.303 12 C 0.078 3.922 13 C -0.279 4.279 14 C -0.089 4.089 15 C -0.267 4.267 16 C 0.078 3.922 17 C -0.598 4.598 18 H 0.074 0.926 19 C -0.204 4.204 20 N -0.428 5.428 21 Si 0.929 3.071 22 H -0.186 1.186 23 H -0.186 1.186 24 H -0.192 1.192 25 C -0.265 4.265 26 H 0.110 0.890 27 H 0.099 0.901 28 H 0.043 0.957 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.137 0.863 32 H 0.071 0.929 33 H 0.261 0.739 34 H 0.156 0.844 35 H 0.146 0.854 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.018 13.227 -6.094 16.166 hybrid contribution 0.657 1.316 -0.196 1.484 sum 7.675 14.544 -6.290 17.606 Atomic orbital electron populations 1.21983 0.93948 1.01385 1.04256 1.23112 0.95013 0.96285 0.82392 0.85716 1.89157 1.28869 1.75159 1.38824 1.23559 0.83928 1.01177 0.94249 1.23002 0.97240 1.00712 0.97307 1.22970 0.94085 0.97131 1.01549 0.83367 1.21214 0.81785 0.88243 0.78473 1.90754 1.69877 1.26492 1.57164 1.43471 1.38385 1.15290 1.33123 1.17580 0.90316 0.88405 0.95894 1.20480 0.94011 0.99792 1.13630 1.20805 0.98701 0.92246 0.97140 1.21077 0.97085 0.96112 1.12457 1.17844 0.91169 0.93273 0.89894 1.20633 1.27869 0.94691 1.16572 0.92640 1.28340 0.89844 1.11190 0.91053 1.70567 1.33458 1.19656 1.19105 0.83085 0.78693 0.67994 0.77308 1.18612 1.18609 1.19198 1.20893 0.99751 0.92623 1.13221 0.88991 0.90116 0.95704 0.89420 0.88459 0.86348 0.92892 0.73881 0.84396 0.85397 0.89498 0.90623 0.90114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 8.58 71.98 0.62 -3.08 16 2 C 0.09 1.83 3.83 31.10 0.12 1.95 16 3 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 4 O -0.40 -10.76 11.34 -148.98 -1.69 -12.45 16 5 C 0.05 0.94 7.63 72.48 0.55 1.49 16 6 C -0.14 -3.14 6.59 31.61 0.21 -2.93 16 7 C -0.14 -2.97 3.42 -10.52 -0.04 -3.00 16 8 H 0.15 1.85 8.14 -2.38 -0.02 1.83 16 9 C 0.51 17.77 4.50 87.66 0.39 18.16 16 10 O -0.57 -26.82 13.40 -3.07 -0.04 -26.86 16 11 N -0.66 -21.57 5.10 -303.65 -1.55 -23.12 16 12 C 0.17 7.61 6.27 38.10 0.24 7.84 16 13 C -0.26 -10.50 9.97 22.58 0.23 -10.28 16 14 C -0.07 -3.14 10.02 22.20 0.22 -2.91 16 15 C -0.25 -13.25 8.15 22.75 0.19 -13.07 16 16 C 0.08 4.73 5.23 -21.31 -0.11 4.62 16 17 C -0.57 -33.89 8.93 23.46 0.21 -33.68 16 18 H 0.06 3.38 7.99 -2.91 -0.02 3.36 16 19 C 0.01 0.70 4.81 85.25 0.41 1.11 16 20 N -0.81 -45.04 12.43 21.82 0.27 -44.77 16 21 Si 1.11 46.23 30.02 68.60 2.06 48.29 16 22 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 23 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 24 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 25 C -0.24 -13.30 8.39 22.85 0.19 -13.10 16 26 H 0.09 1.71 7.91 -2.39 -0.02 1.69 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.02 0.81 7.07 -2.39 -0.02 0.79 16 29 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.60 6.99 -2.39 -0.02 1.59 16 33 H 0.42 9.43 8.82 -92.71 -0.82 8.61 16 34 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 35 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 36 H 0.09 4.83 6.78 -2.91 -0.02 4.81 16 37 H 0.28 16.33 7.15 -92.71 -0.66 15.67 16 38 H 0.08 4.74 6.40 -2.91 -0.02 4.72 16 Total: -1.00 -77.86 314.02 2.84 -75.02 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: 0.36 Total: 30.76 kcal Atomic # 6 Polarization: -50.31 SS G_CDS: 3.43 Total: -46.88 kcal Atomic # 7 Polarization: -66.61 SS G_CDS: -1.28 Total: -67.89 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -1.73 Total: -39.30 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.06 Total: 48.29 kcal Total: -77.86 2.84 -75.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313434350.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.865 kcal (2) G-P(sol) polarization free energy of solvation -77.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds