Wall clock time and date at job start Mon Mar 30 2020 02:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09010 * 110.32759 * 2 1 4 4 O 1.44422 * 110.37189 * 122.24508 * 2 1 3 5 5 C 1.44429 * 105.27376 * 159.45842 * 4 2 1 6 6 C 1.54480 * 104.80018 * 319.49068 * 5 4 2 7 7 C 1.54470 * 110.46965 * 237.68602 * 2 1 3 8 8 H 1.09005 * 110.51371 * 98.35430 * 7 2 1 9 9 C 1.50702 * 110.51036 * 335.78443 * 7 2 1 10 10 O 1.21285 * 120.00011 * 276.05362 * 9 7 2 11 11 N 1.34778 * 119.99896 * 96.05781 * 9 7 2 12 12 C 1.39944 * 119.99822 * 184.83013 * 11 9 7 13 13 C 1.39293 * 119.94786 * 144.52014 * 12 11 9 14 14 C 1.38484 * 120.42576 * 179.97438 * 13 12 11 15 15 C 1.37680 * 120.32307 * 359.95362 * 14 13 12 16 16 C 1.40738 * 119.88732 * 0.02562 * 15 14 13 17 17 C 1.41414 * 120.21259 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99938 * 150.39069 * 17 16 15 19 19 C 1.39928 * 119.99495 * 330.39526 * 17 16 15 20 20 N 1.30826 * 120.00559 * 344.44918 * 19 17 16 21 21 Si 1.86805 * 119.99728 * 164.45513 * 19 17 16 22 22 H 1.48497 * 109.46991 * 94.96507 * 21 19 17 23 23 H 1.48493 * 109.47123 * 214.96754 * 21 19 17 24 24 H 1.48503 * 109.46829 * 334.96569 * 21 19 17 25 25 C 1.38238 * 119.94386 * 324.24107 * 12 11 9 26 26 H 1.08994 * 109.47218 * 304.26551 * 1 2 3 27 27 H 1.08997 * 109.46922 * 64.27458 * 1 2 3 28 28 H 1.09000 * 109.46609 * 184.26675 * 1 2 3 29 29 H 1.09000 * 110.37102 * 78.31661 * 5 4 2 30 30 H 1.08991 * 110.37326 * 200.65581 * 5 4 2 31 31 H 1.09004 * 110.50944 * 142.62605 * 6 5 4 32 32 H 1.09001 * 110.51290 * 265.32739 * 6 5 4 33 33 H 0.97003 * 120.00016 * 4.82095 * 11 9 7 34 34 H 1.07998 * 119.78605 * 359.97438 * 13 12 11 35 35 H 1.08001 * 119.83443 * 179.97438 * 14 13 12 36 36 H 1.08005 * 120.05602 * 179.97438 * 15 14 13 37 37 H 0.96998 * 120.00079 * 180.02562 * 20 19 17 38 38 H 1.08003 * 120.16319 * 0.03185 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 8 2.0328 -0.7224 1.1451 5 6 3.3883 -1.0838 0.8018 6 6 3.3208 -1.5030 -0.6835 7 6 2.0703 -0.7736 -1.2230 8 1 2.3428 -0.0835 -2.0216 9 6 1.0489 -1.7680 -1.7121 10 8 0.9698 -2.8612 -1.1929 11 7 0.2234 -1.4424 -2.7265 12 6 -0.7910 -2.3253 -3.1140 13 6 -2.0170 -1.8278 -3.5495 14 6 -3.0274 -2.6924 -3.9357 15 6 -2.8305 -4.0544 -3.8943 16 6 -1.5968 -4.5716 -3.4569 17 6 -1.3869 -5.9694 -3.4122 18 1 -0.3941 -6.3711 -3.5518 19 6 -2.4655 -6.8319 -3.1871 20 7 -3.5936 -6.3610 -2.7211 21 14 -2.2945 -8.6560 -3.5518 22 1 -1.9167 -9.3759 -2.3092 23 1 -3.5880 -9.1834 -4.0556 24 1 -1.2429 -8.8586 -4.5806 25 6 -0.5725 -3.6896 -3.0694 26 1 -0.3633 0.5786 0.8492 27 1 -0.3633 0.4461 -0.9258 28 1 -0.3632 -1.0248 0.0765 29 1 4.0520 -0.2279 0.9247 30 1 3.7259 -1.9181 1.4166 31 1 4.2140 -1.1734 -1.2143 32 1 3.2005 -2.5829 -0.7705 33 1 0.3323 -0.5962 -3.1880 34 1 -2.1806 -0.7609 -3.5861 35 1 -3.9744 -2.2963 -4.2714 36 1 -3.6217 -4.7248 -4.1961 37 1 -4.3411 -6.9590 -2.5647 38 1 0.3791 -4.0762 -2.7358 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313434360.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:55 Heat of formation + Delta-G solvation = -64.165132 kcal Electronic energy + Delta-G solvation = -21253.945591 eV Core-core repulsion = 18060.856319 eV Total energy + Delta-G solvation = -3193.089272 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.55451 -38.61415 -36.96879 -34.41170 -33.10171 -32.34170 -31.50714 -29.79204 -28.26575 -26.27341 -25.24791 -22.85514 -22.12822 -21.04261 -20.52703 -19.28244 -17.65056 -17.12754 -16.34460 -15.59094 -15.52984 -15.33573 -14.90267 -14.65459 -14.35373 -13.69418 -13.21989 -12.91369 -12.73001 -12.39584 -12.28940 -12.16784 -11.84698 -11.66480 -11.36405 -11.21126 -11.07275 -11.02531 -10.94933 -10.65328 -10.50010 -10.12144 -9.83278 -9.71391 -9.38767 -9.04984 -8.79565 -7.39107 -6.89856 -6.67865 -4.30635 2.61591 2.86723 3.12265 3.16652 3.19958 3.29985 3.60648 3.83747 4.00964 4.43517 4.65117 4.68111 4.86204 4.99158 5.09389 5.26515 5.33195 5.39244 5.52879 5.71039 5.72113 5.81058 5.91212 6.08662 6.24292 6.28431 6.39533 6.78403 6.79775 7.04284 7.06586 7.10773 7.27118 7.58221 7.75502 7.97073 8.11894 8.19240 8.28661 8.66420 8.76354 8.97280 9.00702 10.29090 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.004774 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.026749 B = 5863.113826 C = 6541.467779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.090 3.910 3 H 0.077 0.923 4 O -0.364 6.364 5 C 0.049 3.951 6 C -0.143 4.143 7 C -0.142 4.142 8 H 0.100 0.900 9 C 0.516 3.484 10 O -0.505 6.505 11 N -0.669 5.669 12 C 0.148 3.852 13 C -0.259 4.259 14 C -0.093 4.093 15 C -0.168 4.168 16 C 0.121 3.879 17 C -0.462 4.462 18 H 0.077 0.923 19 C 0.077 3.923 20 N -0.798 5.798 21 Si 0.907 3.093 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.206 4.206 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.396 0.604 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.279 0.721 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.404 11.717 1.554 15.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.032 3.968 3 H 0.095 0.905 4 O -0.283 6.283 5 C -0.028 4.028 6 C -0.181 4.181 7 C -0.165 4.165 8 H 0.118 0.882 9 C 0.301 3.699 10 O -0.379 6.379 11 N -0.313 5.313 12 C 0.056 3.944 13 C -0.280 4.280 14 C -0.112 4.112 15 C -0.188 4.188 16 C 0.118 3.882 17 C -0.492 4.492 18 H 0.095 0.905 19 C -0.140 4.140 20 N -0.424 5.424 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.185 1.185 25 C -0.228 4.228 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.230 0.770 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.131 0.869 37 H 0.090 0.910 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.015 10.804 2.248 14.250 hybrid contribution 0.098 -0.247 -0.519 0.583 sum 9.113 10.556 1.728 14.053 Atomic orbital electron populations 1.21950 0.92622 1.04331 1.02561 1.22834 0.95875 0.94487 0.83604 0.90549 1.89197 1.26983 1.74577 1.37535 1.23364 0.84600 0.99670 0.95181 1.22958 0.95942 1.03248 0.95969 1.22796 0.95982 0.97855 0.99823 0.88225 1.20128 0.81983 0.88174 0.79577 1.90769 1.68799 1.22269 1.56078 1.43503 1.32087 1.21499 1.34178 1.17460 0.87237 0.89344 1.00313 1.20044 0.93744 0.97173 1.17051 1.20449 0.96445 0.93999 1.00339 1.21247 0.99363 0.93229 1.04928 1.17512 0.90671 0.93036 0.87006 1.19514 0.95031 0.90908 1.43732 0.90525 1.25857 0.94532 1.01307 0.92345 1.69823 1.03419 1.37730 1.31401 0.86321 0.78730 0.82131 0.79648 1.19621 1.20112 1.18493 1.21116 1.01597 0.90679 1.09365 0.91569 0.90860 0.90692 0.92426 0.88874 0.90166 0.88692 0.76982 0.89325 0.89068 0.86898 0.91012 0.87144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 8.59 37.16 0.32 -1.84 16 2 C 0.09 1.13 3.83 -25.96 -0.10 1.03 16 3 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 4 O -0.36 -5.40 11.34 -35.23 -0.40 -5.79 16 5 C 0.05 0.55 7.63 37.93 0.29 0.84 16 6 C -0.14 -1.69 6.59 -25.17 -0.17 -1.86 16 7 C -0.14 -1.79 3.43 -90.21 -0.31 -2.10 16 8 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 9 C 0.52 9.14 4.62 -10.98 -0.05 9.09 16 10 O -0.51 -11.57 13.20 5.55 0.07 -11.50 16 11 N -0.67 -11.63 5.02 -9.91 -0.05 -11.68 16 12 C 0.15 3.32 6.28 -83.76 -0.53 2.80 16 13 C -0.26 -5.64 9.97 -39.10 -0.39 -6.03 16 14 C -0.09 -2.18 10.02 -39.69 -0.40 -2.57 16 15 C -0.17 -4.43 8.66 -38.84 -0.34 -4.77 16 16 C 0.12 3.35 5.52 -106.85 -0.59 2.76 16 17 C -0.46 -12.86 9.04 -37.74 -0.34 -13.20 16 18 H 0.08 2.08 7.89 -52.49 -0.41 1.66 16 19 C 0.08 2.01 5.15 -17.35 -0.09 1.92 16 20 N -0.80 -21.48 11.17 55.55 0.62 -20.86 16 21 Si 0.91 19.43 29.59 -169.99 -5.03 14.40 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 25 C -0.21 -5.38 8.43 -38.68 -0.33 -5.71 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.88 7.90 -51.93 -0.41 0.47 16 28 H 0.07 1.34 7.07 -51.93 -0.37 0.97 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 1.39 6.95 -51.93 -0.36 1.03 16 33 H 0.40 5.21 8.82 -40.82 -0.36 4.85 16 34 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 35 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 36 H 0.11 3.06 6.46 -52.48 -0.34 2.72 16 37 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 38 H 0.11 2.99 6.25 -52.48 -0.33 2.66 16 LS Contribution 313.99 15.07 4.73 4.73 Total: -1.00 -32.33 313.99 -8.16 -40.49 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -5.10 Total: 9.84 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -3.01 Total: -19.64 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.57 Total: -32.54 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.33 Total: -17.29 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.33 -8.16 -40.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313434360.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.674 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds