Wall clock time and date at job start Mon Mar 30 2020 02:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09010 * 110.32759 * 2 1 4 4 O 1.44422 * 110.37189 * 122.24508 * 2 1 3 5 5 C 1.44429 * 105.27376 * 159.45842 * 4 2 1 6 6 C 1.54480 * 104.80018 * 319.49068 * 5 4 2 7 7 C 1.54470 * 110.46965 * 237.68602 * 2 1 3 8 8 H 1.09005 * 110.51371 * 98.35430 * 7 2 1 9 9 C 1.50702 * 110.51036 * 335.78443 * 7 2 1 10 10 O 1.21285 * 120.00011 * 276.05362 * 9 7 2 11 11 N 1.34778 * 119.99896 * 96.05781 * 9 7 2 12 12 C 1.39944 * 119.99822 * 184.83013 * 11 9 7 13 13 C 1.39293 * 119.94786 * 144.52014 * 12 11 9 14 14 C 1.38484 * 120.42576 * 179.97438 * 13 12 11 15 15 C 1.37680 * 120.32307 * 359.95362 * 14 13 12 16 16 C 1.40738 * 119.88732 * 0.02562 * 15 14 13 17 17 C 1.41414 * 120.21259 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99938 * 150.39069 * 17 16 15 19 19 C 1.39928 * 119.99495 * 330.39526 * 17 16 15 20 20 N 1.30826 * 120.00559 * 344.44918 * 19 17 16 21 21 Si 1.86805 * 119.99728 * 164.45513 * 19 17 16 22 22 H 1.48497 * 109.46991 * 94.96507 * 21 19 17 23 23 H 1.48493 * 109.47123 * 214.96754 * 21 19 17 24 24 H 1.48503 * 109.46829 * 334.96569 * 21 19 17 25 25 C 1.38238 * 119.94386 * 324.24107 * 12 11 9 26 26 H 1.08994 * 109.47218 * 304.26551 * 1 2 3 27 27 H 1.08997 * 109.46922 * 64.27458 * 1 2 3 28 28 H 1.09000 * 109.46609 * 184.26675 * 1 2 3 29 29 H 1.09000 * 110.37102 * 78.31661 * 5 4 2 30 30 H 1.08991 * 110.37326 * 200.65581 * 5 4 2 31 31 H 1.09004 * 110.50944 * 142.62605 * 6 5 4 32 32 H 1.09001 * 110.51290 * 265.32739 * 6 5 4 33 33 H 0.97003 * 120.00016 * 4.82095 * 11 9 7 34 34 H 1.07998 * 119.78605 * 359.97438 * 13 12 11 35 35 H 1.08001 * 119.83443 * 179.97438 * 14 13 12 36 36 H 1.08005 * 120.05602 * 179.97438 * 15 14 13 37 37 H 0.96998 * 120.00079 * 180.02562 * 20 19 17 38 38 H 1.08003 * 120.16319 * 0.03185 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 8 2.0328 -0.7224 1.1451 5 6 3.3883 -1.0838 0.8018 6 6 3.3208 -1.5030 -0.6835 7 6 2.0703 -0.7736 -1.2230 8 1 2.3428 -0.0835 -2.0216 9 6 1.0489 -1.7680 -1.7121 10 8 0.9698 -2.8612 -1.1929 11 7 0.2234 -1.4424 -2.7265 12 6 -0.7910 -2.3253 -3.1140 13 6 -2.0170 -1.8278 -3.5495 14 6 -3.0274 -2.6924 -3.9357 15 6 -2.8305 -4.0544 -3.8943 16 6 -1.5968 -4.5716 -3.4569 17 6 -1.3869 -5.9694 -3.4122 18 1 -0.3941 -6.3711 -3.5518 19 6 -2.4655 -6.8319 -3.1871 20 7 -3.5936 -6.3610 -2.7211 21 14 -2.2945 -8.6560 -3.5518 22 1 -1.9167 -9.3759 -2.3092 23 1 -3.5880 -9.1834 -4.0556 24 1 -1.2429 -8.8586 -4.5806 25 6 -0.5725 -3.6896 -3.0694 26 1 -0.3633 0.5786 0.8492 27 1 -0.3633 0.4461 -0.9258 28 1 -0.3632 -1.0248 0.0765 29 1 4.0520 -0.2279 0.9247 30 1 3.7259 -1.9181 1.4166 31 1 4.2140 -1.1734 -1.2143 32 1 3.2005 -2.5829 -0.7705 33 1 0.3323 -0.5962 -3.1880 34 1 -2.1806 -0.7609 -3.5861 35 1 -3.9744 -2.2963 -4.2714 36 1 -3.6217 -4.7248 -4.1961 37 1 -4.3411 -6.9590 -2.5647 38 1 0.3791 -4.0762 -2.7358 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313434360.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:55 Heat of formation + Delta-G solvation = -86.347469 kcal Electronic energy + Delta-G solvation = -21254.907489 eV Core-core repulsion = 18060.856319 eV Total energy + Delta-G solvation = -3194.051170 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.83704 -39.98753 -38.67946 -36.18302 -34.87911 -33.50981 -32.47021 -31.75282 -30.00637 -27.41761 -27.17994 -24.24729 -23.06683 -22.85917 -22.19892 -20.68511 -19.47471 -18.33998 -17.64148 -17.24769 -16.86787 -16.51517 -16.49609 -16.26761 -15.83881 -15.09024 -14.92511 -14.65192 -14.06334 -13.95027 -13.56107 -13.39962 -13.26586 -13.16583 -12.89003 -12.82995 -12.57618 -12.30329 -12.23466 -12.04257 -11.93724 -11.87050 -11.57049 -11.22983 -10.90690 -10.71978 -10.46762 -9.36309 -8.73615 -8.63594 -6.38744 0.86895 0.99658 1.34055 1.44462 1.50101 1.74359 2.18324 2.24090 2.72708 2.91909 3.42586 3.62626 3.70989 3.88181 4.11265 4.21146 4.34037 4.35790 4.46308 4.47261 4.61396 4.63628 4.84390 4.89219 4.92742 5.03029 5.09809 5.11879 5.13491 5.19514 5.24552 5.32109 5.76247 5.85788 5.91222 6.05350 6.09599 6.35321 6.65675 6.68894 6.92838 7.00001 7.37323 8.35566 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.004774 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.026749 B = 5863.113826 C = 6541.467779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.090 3.910 3 H 0.125 0.875 4 O -0.403 6.403 5 C 0.046 3.954 6 C -0.144 4.144 7 C -0.134 4.134 8 H 0.151 0.849 9 C 0.511 3.489 10 O -0.566 6.566 11 N -0.655 5.655 12 C 0.156 3.844 13 C -0.244 4.244 14 C -0.093 4.093 15 C -0.193 4.193 16 C 0.088 3.912 17 C -0.508 4.508 18 H 0.064 0.936 19 C 0.035 3.965 20 N -0.832 5.832 21 Si 0.982 3.018 22 H -0.267 1.267 23 H -0.259 1.259 24 H -0.259 1.259 25 C -0.234 4.234 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.020 0.980 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.054 0.946 33 H 0.422 0.578 34 H 0.136 0.864 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.288 0.712 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.353 14.849 1.014 18.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.032 3.968 3 H 0.143 0.857 4 O -0.323 6.323 5 C -0.031 4.031 6 C -0.182 4.182 7 C -0.155 4.155 8 H 0.169 0.831 9 C 0.300 3.700 10 O -0.444 6.444 11 N -0.301 5.301 12 C 0.062 3.938 13 C -0.265 4.265 14 C -0.112 4.112 15 C -0.213 4.213 16 C 0.086 3.914 17 C -0.538 4.538 18 H 0.082 0.918 19 C -0.179 4.179 20 N -0.458 5.458 21 Si 0.803 3.197 22 H -0.192 1.192 23 H -0.183 1.183 24 H -0.183 1.183 25 C -0.256 4.256 26 H 0.096 0.904 27 H 0.111 0.889 28 H 0.040 0.960 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.138 0.862 32 H 0.073 0.927 33 H 0.261 0.739 34 H 0.154 0.846 35 H 0.142 0.858 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.982 14.001 1.690 17.278 hybrid contribution -0.164 -1.048 -0.302 1.103 sum 9.818 12.954 1.388 16.313 Atomic orbital electron populations 1.21966 0.94162 1.01163 1.04171 1.23105 0.94800 0.96346 0.82543 0.85707 1.89165 1.28878 1.75356 1.38857 1.23573 0.83833 1.01116 0.94529 1.23005 0.97271 1.00857 0.97078 1.22940 0.94109 0.97085 1.01415 0.83118 1.21215 0.82022 0.88284 0.78475 1.90759 1.70410 1.25423 1.57806 1.43402 1.30805 1.21611 1.34299 1.17543 0.88891 0.88830 0.98492 1.20514 0.92361 0.99336 1.14243 1.20849 0.98275 0.92892 0.99168 1.21204 0.98607 0.94713 1.06774 1.17857 0.91949 0.93654 0.87986 1.19722 0.95356 0.92073 1.46640 0.91795 1.26711 0.93734 1.06054 0.91360 1.69869 1.04236 1.39693 1.32041 0.85205 0.79316 0.75752 0.79454 1.19171 1.18266 1.18277 1.21075 1.00624 0.92746 1.11142 0.90412 0.88898 0.96041 0.88488 0.89533 0.86158 0.92726 0.73922 0.84604 0.85804 0.88532 0.90198 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 8.59 71.98 0.62 -3.38 16 2 C 0.09 1.93 3.83 31.10 0.12 2.05 16 3 H 0.13 1.60 8.14 -2.38 -0.02 1.58 16 4 O -0.40 -11.31 11.34 -148.98 -1.69 -13.00 16 5 C 0.05 0.93 7.63 72.49 0.55 1.49 16 6 C -0.14 -3.10 6.59 31.61 0.21 -2.90 16 7 C -0.13 -2.95 3.43 -10.53 -0.04 -2.98 16 8 H 0.15 1.80 8.14 -2.38 -0.02 1.78 16 9 C 0.51 17.90 4.62 87.66 0.41 18.30 16 10 O -0.57 -27.39 13.20 -3.04 -0.04 -27.43 16 11 N -0.65 -21.64 5.02 -303.64 -1.53 -23.17 16 12 C 0.16 6.95 6.28 38.10 0.24 7.19 16 13 C -0.24 -10.05 9.97 22.58 0.23 -9.83 16 14 C -0.09 -4.26 10.02 22.20 0.22 -4.03 16 15 C -0.19 -10.56 8.66 22.75 0.20 -10.36 16 16 C 0.09 5.19 5.52 -21.31 -0.12 5.07 16 17 C -0.51 -30.28 9.04 23.46 0.21 -30.07 16 18 H 0.06 3.78 7.89 -2.91 -0.02 3.76 16 19 C 0.04 1.92 5.15 85.25 0.44 2.36 16 20 N -0.83 -46.72 11.17 21.82 0.24 -46.47 16 21 Si 0.98 41.40 29.59 68.60 2.03 43.43 16 22 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 24 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 25 C -0.23 -12.88 8.43 22.85 0.19 -12.69 16 26 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.09 1.92 7.90 -2.39 -0.02 1.90 16 28 H 0.02 0.76 7.07 -2.39 -0.02 0.74 16 29 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.12 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.05 1.64 6.95 -2.39 -0.02 1.62 16 33 H 0.42 9.39 8.82 -92.71 -0.82 8.58 16 34 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 35 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 36 H 0.10 5.49 6.46 -2.91 -0.02 5.47 16 37 H 0.29 14.51 8.30 -92.71 -0.77 13.74 16 38 H 0.09 5.06 6.25 -2.91 -0.02 5.04 16 Total: -1.00 -79.18 313.99 2.75 -76.42 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: 0.26 Total: 29.99 kcal Atomic # 6 Polarization: -43.25 SS G_CDS: 3.48 Total: -39.77 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -1.28 Total: -69.64 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -1.73 Total: -40.43 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -79.18 2.75 -76.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313434360.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.925 kcal (2) G-P(sol) polarization free energy of solvation -79.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds