Wall clock time and date at job start Mon Mar 30 2020 02:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.54629 * 2 1 4 4 C 1.54992 * 110.61841 * 236.94869 * 2 1 3 5 5 C 1.54817 * 102.09137 * 204.47343 * 4 2 1 6 6 C 1.54109 * 104.18576 * 20.87853 * 5 4 2 7 7 H 1.08999 * 109.88223 * 242.60859 * 6 5 4 8 8 C 1.50700 * 110.00280 * 121.52462 * 6 5 4 9 9 O 1.21285 * 120.00036 * 245.64514 * 8 6 5 10 10 N 1.34779 * 119.99978 * 65.64050 * 8 6 5 11 11 C 1.39939 * 120.00024 * 174.87361 * 10 8 6 12 12 C 1.39285 * 119.94569 * 146.37856 * 11 10 8 13 13 C 1.38491 * 120.42945 * 179.97438 * 12 11 10 14 14 C 1.37684 * 120.31672 * 0.02562 * 13 12 11 15 15 C 1.40745 * 119.88990 * 0.02562 * 14 13 12 16 16 C 1.41397 * 120.21031 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00084 * 151.76243 * 16 15 14 18 18 C 1.39934 * 120.00819 * 331.76191 * 16 15 14 19 19 N 1.30830 * 119.99266 * 349.00786 * 18 16 15 20 20 Si 1.86798 * 120.00465 * 169.00601 * 18 16 15 21 21 H 1.48491 * 109.47020 * 90.00275 * 20 18 16 22 22 H 1.48497 * 109.46667 * 209.99932 * 20 18 16 23 23 H 1.48492 * 109.47057 * 329.99954 * 20 18 16 24 24 C 1.38239 * 119.94702 * 326.10070 * 11 10 8 25 25 O 1.43746 * 107.29352 * 2.03307 * 6 5 4 26 26 H 1.08993 * 109.47329 * 298.57464 * 1 2 3 27 27 H 1.09005 * 109.46819 * 178.57493 * 1 2 3 28 28 H 1.08999 * 109.47279 * 58.58132 * 1 2 3 29 29 H 1.09002 * 110.90991 * 322.66859 * 4 2 1 30 30 H 1.08995 * 110.91026 * 86.27627 * 4 2 1 31 31 H 1.09000 * 110.48542 * 262.20756 * 5 4 2 32 32 H 1.08995 * 110.60463 * 139.61229 * 5 4 2 33 33 H 0.96997 * 119.99578 * 354.86748 * 10 8 6 34 34 H 1.08002 * 119.78990 * 359.97438 * 12 11 10 35 35 H 1.07999 * 119.84217 * 180.02562 * 13 12 11 36 36 H 1.08001 * 120.05588 * 180.02562 * 14 13 12 37 37 H 0.97000 * 120.00477 * 179.97438 * 19 18 16 38 38 H 1.08005 * 120.15526 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0758 -0.7912 -1.2159 5 6 3.4796 -1.2177 -0.7216 6 6 3.3840 -1.1240 0.8137 7 1 4.0853 -0.3762 1.1838 8 6 3.6901 -2.4638 1.4320 9 8 2.8254 -3.0668 2.0317 10 7 4.9249 -2.9921 1.3184 11 6 5.2401 -4.1831 1.9819 12 6 6.1304 -5.0857 1.4050 13 6 6.4499 -6.2672 2.0531 14 6 5.8897 -6.5627 3.2757 15 6 4.9876 -5.6608 3.8703 16 6 4.4080 -5.9577 5.1253 17 1 4.1088 -5.1567 5.7851 18 6 4.2218 -7.2894 5.5128 19 7 4.3797 -8.2523 4.6412 20 14 3.7480 -7.6923 7.2742 21 1 2.2683 -7.7098 7.3970 22 1 4.2909 -9.0251 7.6401 23 1 4.3083 -6.6623 8.1854 24 6 4.6718 -4.4594 3.2114 25 8 2.0384 -0.7335 1.1350 26 1 -0.3633 0.4915 0.9024 27 1 -0.3633 -1.0274 -0.0256 28 1 -0.3634 0.5357 -0.8770 29 1 1.4550 -1.6628 -1.4233 30 1 2.1509 -0.1508 -2.0947 31 1 4.2407 -0.5347 -1.0988 32 1 3.6999 -2.2401 -1.0284 33 1 5.5949 -2.5466 0.7766 34 1 6.5745 -4.8628 0.4461 35 1 7.1417 -6.9601 1.5974 36 1 6.1421 -7.4852 3.7775 37 1 4.2510 -9.1754 4.9096 38 1 3.9851 -3.7578 3.6617 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313495484.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:07 Heat of formation + Delta-G solvation = -64.958833 kcal Electronic energy + Delta-G solvation = -20803.606125 eV Core-core repulsion = 17610.482435 eV Total energy + Delta-G solvation = -3193.123689 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.33350 -38.74300 -36.95369 -34.41941 -33.07911 -32.38842 -31.77496 -29.78255 -28.44014 -26.40528 -25.24940 -22.80141 -21.37892 -21.33590 -20.81102 -19.52611 -17.81141 -17.06866 -16.54376 -15.98605 -15.39909 -14.92610 -14.59779 -14.50102 -14.19724 -13.95504 -13.51282 -12.94642 -12.88465 -12.58838 -12.47810 -12.12914 -11.85564 -11.69829 -11.50792 -11.28778 -11.07875 -11.05617 -10.99639 -10.60742 -10.46916 -10.13399 -9.93168 -9.71199 -9.35702 -9.05272 -8.78140 -7.38681 -6.86831 -6.62811 -4.30905 2.60031 2.86976 3.12999 3.17886 3.22485 3.23374 3.37410 3.97597 4.02811 4.34967 4.58322 4.66619 4.70722 4.90381 4.96339 5.21063 5.25606 5.33309 5.50395 5.54412 5.69271 5.74396 5.78853 5.90836 6.02943 6.25581 6.40141 6.73136 6.79988 7.05079 7.07859 7.11842 7.31041 7.59808 7.75680 7.99710 8.13099 8.19881 8.31170 8.67620 8.77069 8.98725 9.01991 10.30669 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.023666 B = 0.004281 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.866713 B = 6538.992695 C = 7417.778900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 H 0.071 0.929 4 C -0.149 4.149 5 C -0.149 4.149 6 C 0.063 3.937 7 H 0.093 0.907 8 C 0.501 3.499 9 O -0.492 6.492 10 N -0.668 5.668 11 C 0.150 3.850 12 C -0.259 4.259 13 C -0.094 4.094 14 C -0.167 4.167 15 C 0.119 3.881 16 C -0.457 4.457 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.801 5.801 20 Si 0.911 3.089 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.208 4.208 25 O -0.342 6.342 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.397 0.603 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.279 0.721 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.836 13.284 -10.468 16.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.089 0.911 4 C -0.186 4.186 5 C -0.187 4.187 6 C 0.001 3.999 7 H 0.110 0.890 8 C 0.285 3.715 9 O -0.364 6.364 10 N -0.314 5.314 11 C 0.059 3.941 12 C -0.280 4.280 13 C -0.113 4.113 14 C -0.187 4.187 15 C 0.116 3.884 16 C -0.487 4.487 17 H 0.095 0.905 18 C -0.143 4.143 19 N -0.428 5.428 20 Si 0.736 3.264 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.230 4.230 25 O -0.261 6.261 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.231 0.769 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.139 0.861 37 H 0.090 0.910 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.658 12.582 -9.834 16.056 hybrid contribution 0.240 -0.021 0.177 0.299 sum -1.418 12.561 -9.657 15.907 Atomic orbital electron populations 1.21766 0.92937 1.03322 1.02338 1.23201 0.95610 0.95117 0.85018 0.91089 1.23191 0.95913 1.01048 0.98481 1.22950 0.98617 1.03785 0.93302 1.22595 0.87178 0.94925 0.95164 0.88979 1.20401 0.82644 0.86972 0.81452 1.90793 1.45473 1.60562 1.39615 1.43372 1.12572 1.24960 1.50453 1.17418 0.98921 0.85567 0.92196 1.20038 1.09311 0.97407 1.01275 1.20479 0.99555 0.95234 0.96064 1.21407 0.99131 1.01868 0.96312 1.17503 0.88775 0.89924 0.92192 1.19553 1.35501 0.92269 1.01425 0.90550 1.25881 0.93278 0.96099 0.99026 1.69804 1.37185 1.01069 1.34700 0.86262 0.79431 0.78380 0.82334 1.19509 1.20184 1.18548 1.21001 1.05942 1.01719 0.94322 1.89051 1.26001 1.73083 1.37921 0.91675 0.91479 0.91180 0.90051 0.89944 0.89634 0.89723 0.76915 0.89299 0.89011 0.86062 0.91043 0.87584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.66 37.16 0.36 -1.06 16 2 C 0.07 0.74 3.98 -25.68 -0.10 0.63 16 3 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 4 C -0.15 -1.41 6.59 -24.72 -0.16 -1.57 16 5 C -0.15 -1.51 6.62 -25.19 -0.17 -1.67 16 6 C 0.06 0.87 3.84 -27.30 -0.10 0.77 16 7 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 8 C 0.50 9.54 6.69 -10.98 -0.07 9.46 16 9 O -0.49 -12.18 14.24 -14.01 -0.20 -12.38 16 10 N -0.67 -12.09 5.32 -9.91 -0.05 -12.14 16 11 C 0.15 3.48 6.26 -83.77 -0.52 2.95 16 12 C -0.26 -5.75 9.97 -39.10 -0.39 -6.14 16 13 C -0.09 -2.23 10.02 -39.69 -0.40 -2.63 16 14 C -0.17 -4.47 8.66 -38.84 -0.34 -4.81 16 15 C 0.12 3.35 5.55 -106.85 -0.59 2.76 16 16 C -0.46 -12.89 9.06 -37.75 -0.34 -13.23 16 17 H 0.08 2.10 7.87 -52.49 -0.41 1.68 16 18 C 0.07 1.94 5.25 -17.34 -0.09 1.85 16 19 N -0.80 -21.61 10.82 55.55 0.60 -21.01 16 20 Si 0.91 19.65 29.57 -169.99 -5.03 14.62 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 24 C -0.21 -5.57 8.39 -38.69 -0.32 -5.90 16 25 O -0.34 -5.39 10.44 -54.80 -0.57 -5.96 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.85 8.05 -51.93 -0.42 0.43 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.94 7.70 -51.93 -0.40 0.54 16 33 H 0.40 5.36 8.82 -40.82 -0.36 5.00 16 34 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 36 H 0.12 3.32 6.18 -52.49 -0.32 2.99 16 37 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 38 H 0.11 2.95 6.44 -52.48 -0.34 2.62 16 LS Contribution 318.70 15.07 4.80 4.80 Total: -1.00 -33.43 318.70 -8.89 -42.32 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -5.19 Total: 8.31 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -3.25 Total: -18.57 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.55 Total: -33.15 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.77 Total: -18.34 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.43 -8.89 -42.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313495484.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.634 kcal (2) G-P(sol) polarization free energy of solvation -33.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds