Wall clock time and date at job start Mon Mar 30 2020 02:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.54629 * 2 1 4 4 C 1.54992 * 110.61841 * 236.94869 * 2 1 3 5 5 C 1.54817 * 102.09137 * 204.47343 * 4 2 1 6 6 C 1.54109 * 104.18576 * 20.87853 * 5 4 2 7 7 H 1.08999 * 109.88223 * 242.60859 * 6 5 4 8 8 C 1.50700 * 110.00280 * 121.52462 * 6 5 4 9 9 O 1.21285 * 120.00036 * 245.64514 * 8 6 5 10 10 N 1.34779 * 119.99978 * 65.64050 * 8 6 5 11 11 C 1.39939 * 120.00024 * 174.87361 * 10 8 6 12 12 C 1.39285 * 119.94569 * 146.37856 * 11 10 8 13 13 C 1.38491 * 120.42945 * 179.97438 * 12 11 10 14 14 C 1.37684 * 120.31672 * 0.02562 * 13 12 11 15 15 C 1.40745 * 119.88990 * 0.02562 * 14 13 12 16 16 C 1.41397 * 120.21031 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00084 * 151.76243 * 16 15 14 18 18 C 1.39934 * 120.00819 * 331.76191 * 16 15 14 19 19 N 1.30830 * 119.99266 * 349.00786 * 18 16 15 20 20 Si 1.86798 * 120.00465 * 169.00601 * 18 16 15 21 21 H 1.48491 * 109.47020 * 90.00275 * 20 18 16 22 22 H 1.48497 * 109.46667 * 209.99932 * 20 18 16 23 23 H 1.48492 * 109.47057 * 329.99954 * 20 18 16 24 24 C 1.38239 * 119.94702 * 326.10070 * 11 10 8 25 25 O 1.43746 * 107.29352 * 2.03307 * 6 5 4 26 26 H 1.08993 * 109.47329 * 298.57464 * 1 2 3 27 27 H 1.09005 * 109.46819 * 178.57493 * 1 2 3 28 28 H 1.08999 * 109.47279 * 58.58132 * 1 2 3 29 29 H 1.09002 * 110.90991 * 322.66859 * 4 2 1 30 30 H 1.08995 * 110.91026 * 86.27627 * 4 2 1 31 31 H 1.09000 * 110.48542 * 262.20756 * 5 4 2 32 32 H 1.08995 * 110.60463 * 139.61229 * 5 4 2 33 33 H 0.96997 * 119.99578 * 354.86748 * 10 8 6 34 34 H 1.08002 * 119.78990 * 359.97438 * 12 11 10 35 35 H 1.07999 * 119.84217 * 180.02562 * 13 12 11 36 36 H 1.08001 * 120.05588 * 180.02562 * 14 13 12 37 37 H 0.97000 * 120.00477 * 179.97438 * 19 18 16 38 38 H 1.08005 * 120.15526 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0758 -0.7912 -1.2159 5 6 3.4796 -1.2177 -0.7216 6 6 3.3840 -1.1240 0.8137 7 1 4.0853 -0.3762 1.1838 8 6 3.6901 -2.4638 1.4320 9 8 2.8254 -3.0668 2.0317 10 7 4.9249 -2.9921 1.3184 11 6 5.2401 -4.1831 1.9819 12 6 6.1304 -5.0857 1.4050 13 6 6.4499 -6.2672 2.0531 14 6 5.8897 -6.5627 3.2757 15 6 4.9876 -5.6608 3.8703 16 6 4.4080 -5.9577 5.1253 17 1 4.1088 -5.1567 5.7851 18 6 4.2218 -7.2894 5.5128 19 7 4.3797 -8.2523 4.6412 20 14 3.7480 -7.6923 7.2742 21 1 2.2683 -7.7098 7.3970 22 1 4.2909 -9.0251 7.6401 23 1 4.3083 -6.6623 8.1854 24 6 4.6718 -4.4594 3.2114 25 8 2.0384 -0.7335 1.1350 26 1 -0.3633 0.4915 0.9024 27 1 -0.3633 -1.0274 -0.0256 28 1 -0.3634 0.5357 -0.8770 29 1 1.4550 -1.6628 -1.4233 30 1 2.1509 -0.1508 -2.0947 31 1 4.2407 -0.5347 -1.0988 32 1 3.6999 -2.2401 -1.0284 33 1 5.5949 -2.5466 0.7766 34 1 6.5745 -4.8628 0.4461 35 1 7.1417 -6.9601 1.5974 36 1 6.1421 -7.4852 3.7775 37 1 4.2510 -9.1754 4.9096 38 1 3.9851 -3.7578 3.6617 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313495484.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:07 Heat of formation + Delta-G solvation = -86.828795 kcal Electronic energy + Delta-G solvation = -20804.554478 eV Core-core repulsion = 17610.482435 eV Total energy + Delta-G solvation = -3194.072042 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.65810 -40.10057 -38.74824 -36.23545 -34.90799 -33.29894 -32.78924 -31.76943 -30.08805 -27.60591 -27.21995 -23.96718 -22.93794 -22.64455 -22.19138 -21.12471 -19.61259 -18.43675 -17.62892 -17.41925 -17.17405 -16.51835 -16.34748 -15.92150 -15.62177 -14.95971 -14.76486 -14.71978 -14.48306 -14.01019 -13.64964 -13.41480 -13.30513 -13.13802 -12.86004 -12.68078 -12.63312 -12.42468 -12.23001 -12.01125 -11.81119 -11.80939 -11.59570 -11.26263 -11.06126 -10.81138 -10.40936 -9.38575 -8.75162 -8.59938 -6.41072 0.82512 0.96847 1.34254 1.45092 1.49776 1.72551 1.93746 2.20658 2.73300 2.95599 3.44680 3.64330 3.71365 3.85198 3.91265 4.19514 4.32455 4.43589 4.45265 4.57896 4.60741 4.76400 4.87891 4.95167 4.99817 5.02107 5.07772 5.10252 5.17638 5.19757 5.25803 5.31513 5.71841 5.81560 5.91789 6.05579 6.09529 6.33210 6.61691 6.67342 6.91979 6.98410 7.29481 8.35434 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.023666 B = 0.004281 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.866713 B = 6538.992695 C = 7417.778900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.058 3.942 3 H 0.100 0.900 4 C -0.145 4.145 5 C -0.141 4.141 6 C 0.068 3.932 7 H 0.126 0.874 8 C 0.494 3.506 9 O -0.561 6.561 10 N -0.651 5.651 11 C 0.155 3.845 12 C -0.243 4.243 13 C -0.092 4.092 14 C -0.192 4.192 15 C 0.087 3.913 16 C -0.505 4.505 17 H 0.063 0.937 18 C 0.033 3.967 19 N -0.831 5.831 20 Si 0.986 3.014 21 H -0.267 1.267 22 H -0.257 1.257 23 H -0.259 1.259 24 C -0.238 4.238 25 O -0.388 6.388 26 H 0.057 0.943 27 H 0.043 0.957 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.121 0.879 31 H 0.131 0.869 32 H 0.073 0.927 33 H 0.424 0.576 34 H 0.138 0.862 35 H 0.127 0.873 36 H 0.107 0.893 37 H 0.288 0.712 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.435 14.882 -12.904 19.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.002 3.998 3 H 0.118 0.882 4 C -0.182 4.182 5 C -0.179 4.179 6 C 0.007 3.993 7 H 0.143 0.857 8 C 0.282 3.718 9 O -0.438 6.438 10 N -0.299 5.299 11 C 0.062 3.938 12 C -0.264 4.264 13 C -0.111 4.111 14 C -0.212 4.212 15 C 0.084 3.916 16 C -0.535 4.535 17 H 0.081 0.919 18 C -0.181 4.181 19 N -0.458 5.458 20 Si 0.806 3.194 21 H -0.192 1.192 22 H -0.181 1.181 23 H -0.183 1.183 24 C -0.260 4.260 25 O -0.308 6.308 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.121 0.879 29 H 0.080 0.920 30 H 0.139 0.861 31 H 0.150 0.850 32 H 0.092 0.908 33 H 0.263 0.737 34 H 0.155 0.845 35 H 0.144 0.856 36 H 0.125 0.875 37 H 0.099 0.901 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.345 14.222 -12.330 18.826 hybrid contribution -0.152 -0.420 0.780 0.899 sum -0.497 13.802 -11.550 18.004 Atomic orbital electron populations 1.21822 0.92843 1.02251 1.03539 1.23570 0.95925 0.96178 0.84132 0.88210 1.23217 0.94983 1.00826 0.99205 1.23037 1.00354 1.04488 0.90041 1.22761 0.87360 0.91696 0.97451 0.85657 1.21616 0.81744 0.88449 0.80021 1.90769 1.47563 1.62806 1.42631 1.43230 1.13328 1.23493 1.49835 1.17526 0.97834 0.87387 0.91065 1.20513 1.07597 0.95916 1.02388 1.20889 0.99122 0.96314 0.94794 1.21375 1.00279 1.01484 0.98068 1.17845 0.89727 0.91067 0.92919 1.19766 1.38064 0.93286 1.02360 0.91895 1.26733 0.92641 0.95171 1.03512 1.69848 1.37661 1.01652 1.36643 0.85164 0.79027 0.78800 0.76418 1.19227 1.18105 1.18331 1.20943 1.07063 1.01536 0.96432 1.89027 1.27111 1.73984 1.40643 0.92400 0.93792 0.87929 0.91997 0.86110 0.85047 0.90821 0.73720 0.84472 0.85553 0.87502 0.90147 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.66 71.98 0.70 -2.01 16 2 C 0.06 1.13 3.98 31.28 0.12 1.25 16 3 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.14 -2.27 6.59 31.90 0.21 -2.06 16 5 C -0.14 -2.33 6.62 31.59 0.21 -2.12 16 6 C 0.07 1.76 3.84 30.22 0.12 1.87 16 7 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 8 C 0.49 18.85 6.69 87.66 0.59 19.44 16 9 O -0.56 -29.30 14.24 15.66 0.22 -29.08 16 10 N -0.65 -22.67 5.32 -303.65 -1.62 -24.29 16 11 C 0.15 7.13 6.26 38.10 0.24 7.37 16 12 C -0.24 -10.19 9.97 22.58 0.23 -9.97 16 13 C -0.09 -4.25 10.02 22.20 0.22 -4.03 16 14 C -0.19 -10.57 8.66 22.75 0.20 -10.37 16 15 C 0.09 5.19 5.55 -21.31 -0.12 5.07 16 16 C -0.50 -30.39 9.06 23.46 0.21 -30.17 16 17 H 0.06 3.76 7.87 -2.91 -0.02 3.74 16 18 C 0.03 1.80 5.25 85.25 0.45 2.25 16 19 N -0.83 -46.42 10.82 21.82 0.24 -46.19 16 20 Si 0.99 41.66 29.57 68.60 2.03 43.69 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 22 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 23 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 24 C -0.24 -13.41 8.39 22.85 0.19 -13.22 16 25 O -0.39 -12.04 10.44 -130.27 -1.36 -13.40 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.04 0.99 8.13 -2.38 -0.02 0.97 16 28 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.06 1.20 8.05 -2.39 -0.02 1.19 16 30 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.40 7.70 -2.39 -0.02 1.38 16 33 H 0.42 9.96 8.82 -92.71 -0.82 9.14 16 34 H 0.14 4.45 8.06 -2.91 -0.02 4.42 16 35 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16 36 H 0.11 6.09 6.18 -2.91 -0.02 6.07 16 37 H 0.29 14.42 8.30 -92.71 -0.77 13.66 16 38 H 0.08 4.76 6.44 -2.91 -0.02 4.74 16 Total: -1.00 -80.89 318.70 3.32 -77.57 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.25 Total: 28.39 kcal Atomic # 6 Polarization: -40.26 SS G_CDS: 3.56 Total: -36.70 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -1.38 Total: -70.48 kcal Atomic # 8 Polarization: -41.34 SS G_CDS: -1.14 Total: -42.48 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -80.89 3.32 -77.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313495484.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.263 kcal (2) G-P(sol) polarization free energy of solvation -80.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds