Wall clock time and date at job start Mon Mar 30 2020 02:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.86965 * 2 1 4 4 C 1.54098 * 110.00598 * 121.08756 * 2 1 3 5 5 C 1.54805 * 104.19188 * 121.52243 * 4 2 1 6 6 H 1.08997 * 110.93932 * 262.67052 * 5 4 2 7 7 C 1.50706 * 110.90715 * 139.07562 * 5 4 2 8 8 O 1.21286 * 119.99954 * 5.84951 * 7 5 4 9 9 N 1.34779 * 119.99787 * 185.83941 * 7 5 4 10 10 C 1.39936 * 119.99414 * 175.68427 * 9 7 5 11 11 C 1.39298 * 119.94501 * 215.17216 * 10 9 7 12 12 C 1.38483 * 120.42893 * 179.72944 * 11 10 9 13 13 C 1.37687 * 120.32234 * 0.27090 * 12 11 10 14 14 C 1.40745 * 119.88398 * 0.02562 * 13 12 11 15 15 C 1.41406 * 120.20914 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99917 * 145.25651 * 15 14 13 17 17 C 1.39932 * 119.99878 * 325.25845 * 15 14 13 18 18 N 1.30832 * 120.00204 * 4.42675 * 17 15 14 19 19 Si 1.86801 * 119.99955 * 184.42837 * 17 15 14 20 20 H 1.48499 * 109.47297 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47484 * 119.99853 * 19 17 15 22 22 H 1.48500 * 109.47168 * 239.99756 * 19 17 15 23 23 C 1.38243 * 119.95260 * 35.44868 * 10 9 7 24 24 C 1.54993 * 102.09001 * 20.88535 * 5 4 2 25 25 O 1.43738 * 109.88154 * 238.99330 * 2 1 3 26 26 H 1.09001 * 109.46785 * 179.55213 * 1 2 3 27 27 H 1.09001 * 109.46941 * 299.55163 * 1 2 3 28 28 H 1.08998 * 109.47003 * 59.55132 * 1 2 3 29 29 H 1.09005 * 110.48588 * 2.84690 * 4 2 1 30 30 H 1.09003 * 110.48832 * 240.20661 * 4 2 1 31 31 H 0.96990 * 120.00011 * 355.69127 * 9 7 5 32 32 H 1.08000 * 119.78292 * 359.97438 * 11 10 9 33 33 H 1.08001 * 119.84131 * 180.25329 * 12 11 10 34 34 H 1.08004 * 120.05672 * 180.02562 * 13 12 11 35 35 H 0.96998 * 119.99959 * 180.02562 * 18 17 15 36 36 H 1.08005 * 120.15958 * 359.97438 * 23 10 9 37 37 H 1.09007 * 110.62320 * 81.47500 * 24 5 4 38 38 H 1.09000 * 110.62138 * 204.47159 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0572 -0.7477 1.2400 5 6 2.9244 -1.8888 0.6550 6 1 2.3613 -2.8208 0.6075 7 6 4.1890 -2.0675 1.4550 8 8 4.3563 -1.4326 2.4748 9 7 5.1340 -2.9330 1.0372 10 6 6.3460 -3.0331 1.7294 11 6 7.5266 -3.2797 1.0322 12 6 8.7324 -3.3751 1.7065 13 6 8.7766 -3.2326 3.0753 14 6 7.5911 -2.9893 3.7937 15 6 7.6286 -2.8413 5.1994 16 1 6.9550 -2.1530 5.6881 17 6 8.5386 -3.5866 5.9574 18 7 9.4127 -4.3552 5.3599 19 14 8.5054 -3.4844 7.8223 20 1 7.4313 -2.5514 8.2478 21 1 8.2434 -4.8324 8.3874 22 1 9.8155 -2.9875 8.3142 23 6 6.3693 -2.8928 3.1045 24 6 3.2399 -1.3601 -0.7674 25 8 2.0188 -0.6963 -1.1586 26 1 -0.3633 -1.0277 -0.0080 27 1 -0.3633 0.5069 0.8940 28 1 -0.3633 0.5208 -0.8859 29 1 1.2294 -1.1564 1.8196 30 1 2.6645 -0.0843 1.8559 31 1 4.9739 -3.4863 0.2569 32 1 7.5018 -3.3933 -0.0415 33 1 9.6425 -3.5625 1.1561 34 1 9.7195 -3.3074 3.5967 35 1 10.0433 -4.8721 5.8853 36 1 5.4539 -2.7056 3.6463 37 1 4.0690 -0.6531 -0.7391 38 1 3.4614 -2.1859 -1.4435 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313498592.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:27 Heat of formation + Delta-G solvation = -67.851556 kcal Electronic energy + Delta-G solvation = -20717.831266 eV Core-core repulsion = 17524.582139 eV Total energy + Delta-G solvation = -3193.249127 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.44775 -38.88873 -37.11476 -34.49261 -33.07269 -32.47650 -31.79341 -29.80779 -28.15462 -26.05800 -25.29067 -23.68144 -21.63553 -21.04147 -20.61898 -19.52238 -17.82661 -17.26849 -16.24689 -15.64971 -15.49141 -15.32968 -14.92519 -14.65679 -14.52694 -13.60486 -13.55092 -12.98785 -12.91030 -12.69093 -12.51391 -12.25466 -11.98573 -11.69906 -11.46223 -11.18327 -11.12159 -11.04244 -10.94371 -10.86876 -10.40272 -10.21120 -9.87868 -9.65964 -9.42199 -9.14822 -8.89385 -7.39387 -6.93607 -6.57230 -4.37638 2.53307 2.82036 3.11877 3.14893 3.18896 3.25474 3.42431 3.79504 4.01093 4.27830 4.59251 4.71819 4.79653 4.85953 5.03013 5.08334 5.24811 5.45046 5.50618 5.53017 5.66181 5.76688 5.83041 5.95505 6.01191 6.21340 6.34016 6.69098 6.72028 6.98429 7.01883 7.09354 7.31918 7.53012 7.71485 7.94867 8.12160 8.13260 8.26446 8.61713 8.71115 8.97101 8.98626 10.32394 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.027739 B = 0.003997 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.159759 B = 7003.647222 C = 7869.444351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.070 3.930 3 H 0.070 0.930 4 C -0.137 4.137 5 C -0.144 4.144 6 H 0.110 0.890 7 C 0.513 3.487 8 O -0.513 6.513 9 N -0.665 5.665 10 C 0.137 3.863 11 C -0.248 4.248 12 C -0.100 4.100 13 C -0.159 4.159 14 C 0.113 3.887 15 C -0.461 4.461 16 H 0.077 0.923 17 C 0.070 3.930 18 N -0.813 5.813 19 Si 0.914 3.086 20 H -0.262 1.262 21 H -0.275 1.275 22 H -0.274 1.274 23 C -0.199 4.199 24 C 0.060 3.940 25 O -0.373 6.373 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.398 0.602 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.130 0.870 35 H 0.276 0.724 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.451 3.196 -9.306 15.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.013 3.987 3 H 0.088 0.912 4 C -0.175 4.175 5 C -0.166 4.166 6 H 0.128 0.872 7 C 0.299 3.701 8 O -0.387 6.387 9 N -0.308 5.308 10 C 0.046 3.954 11 C -0.270 4.270 12 C -0.119 4.119 13 C -0.179 4.179 14 C 0.110 3.890 15 C -0.492 4.492 16 H 0.095 0.905 17 C -0.144 4.144 18 N -0.441 5.441 19 Si 0.739 3.261 20 H -0.186 1.186 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.220 4.220 24 C -0.017 4.017 25 O -0.292 6.292 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.232 0.768 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.147 0.853 35 H 0.087 0.913 36 H 0.130 0.870 37 H 0.086 0.914 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.279 3.527 -8.717 14.685 hybrid contribution 0.094 -0.513 0.575 0.776 sum -11.186 3.014 -8.142 14.160 Atomic orbital electron populations 1.21930 0.93642 1.02796 1.02346 1.22802 0.95148 0.96039 0.84733 0.91204 1.22959 0.99746 0.96860 0.97945 1.22887 0.95557 1.01727 0.96437 0.87175 1.20192 0.84340 0.79678 0.85934 1.90743 1.77976 1.46061 1.23947 1.43422 1.15804 1.40184 1.31418 1.17482 0.83267 1.03313 0.91353 1.20131 0.91975 1.17847 0.97003 1.20554 0.95301 1.00955 0.95079 1.21657 0.99648 1.04667 0.91912 1.17575 0.89895 0.88244 0.93315 1.19568 1.16538 1.21462 0.91612 0.90532 1.25860 0.93534 0.93879 1.01164 1.69767 1.15063 1.21895 1.37348 0.86158 0.78962 0.78856 0.82081 1.18564 1.20012 1.19983 1.21269 0.98430 1.10946 0.91336 1.23481 0.88176 0.96884 0.93125 1.88869 1.39258 1.67752 1.33322 0.91877 0.91152 0.92004 0.89856 0.88508 0.76784 0.89194 0.88913 0.85268 0.91275 0.87028 0.91395 0.88254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.37 37.16 0.35 -0.92 16 2 C 0.07 0.75 4.05 -26.16 -0.11 0.64 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.14 -1.62 6.02 -25.21 -0.15 -1.77 16 5 C -0.14 -1.76 3.52 -89.77 -0.32 -2.07 16 6 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 7 C 0.51 8.71 7.00 -10.98 -0.08 8.63 16 8 O -0.51 -11.03 12.97 5.55 0.07 -10.96 16 9 N -0.66 -11.36 5.28 -9.90 -0.05 -11.41 16 10 C 0.14 3.05 6.29 -83.76 -0.53 2.52 16 11 C -0.25 -5.35 9.97 -39.10 -0.39 -5.74 16 12 C -0.10 -2.31 10.02 -39.69 -0.40 -2.71 16 13 C -0.16 -4.17 8.67 -38.84 -0.34 -4.51 16 14 C 0.11 3.09 5.55 -106.85 -0.59 2.50 16 15 C -0.46 -12.74 9.04 -37.74 -0.34 -13.08 16 16 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 17 C 0.07 1.82 5.42 -17.34 -0.09 1.72 16 18 N -0.81 -21.40 10.60 55.55 0.59 -20.81 16 19 Si 0.91 19.47 29.56 -169.99 -5.03 14.44 16 20 H -0.26 -5.57 7.11 56.52 0.40 -5.16 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 C -0.20 -5.11 8.43 -38.69 -0.33 -5.44 16 24 C 0.06 0.67 7.12 38.21 0.27 0.94 16 25 O -0.37 -4.48 11.19 -35.23 -0.39 -4.87 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.88 7.70 -51.93 -0.40 0.48 16 30 H 0.10 1.34 6.94 -51.93 -0.36 0.97 16 31 H 0.40 5.18 8.82 -40.82 -0.36 4.82 16 32 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 34 H 0.13 3.51 6.13 -52.48 -0.32 3.19 16 35 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 36 H 0.11 2.97 6.25 -52.48 -0.33 2.64 16 37 H 0.07 0.80 8.04 -51.93 -0.42 0.39 16 38 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 316.39 15.07 4.77 4.77 Total: -1.00 -30.86 316.39 -8.19 -39.05 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -5.12 Total: 9.07 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -3.04 Total: -19.28 kcal Atomic # 7 Polarization: -32.76 SS G_CDS: 0.54 Total: -32.22 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.32 Total: -15.83 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.86 -8.19 -39.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313498592.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.801 kcal (2) G-P(sol) polarization free energy of solvation -30.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds