Wall clock time and date at job start Mon Mar 30 2020 02:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.86965 * 2 1 4 4 C 1.54098 * 110.00598 * 121.08756 * 2 1 3 5 5 C 1.54805 * 104.19188 * 121.52243 * 4 2 1 6 6 H 1.08997 * 110.93932 * 262.67052 * 5 4 2 7 7 C 1.50706 * 110.90715 * 139.07562 * 5 4 2 8 8 O 1.21286 * 119.99954 * 5.84951 * 7 5 4 9 9 N 1.34779 * 119.99787 * 185.83941 * 7 5 4 10 10 C 1.39936 * 119.99414 * 175.68427 * 9 7 5 11 11 C 1.39298 * 119.94501 * 215.17216 * 10 9 7 12 12 C 1.38483 * 120.42893 * 179.72944 * 11 10 9 13 13 C 1.37687 * 120.32234 * 0.27090 * 12 11 10 14 14 C 1.40745 * 119.88398 * 0.02562 * 13 12 11 15 15 C 1.41406 * 120.20914 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99917 * 145.25651 * 15 14 13 17 17 C 1.39932 * 119.99878 * 325.25845 * 15 14 13 18 18 N 1.30832 * 120.00204 * 4.42675 * 17 15 14 19 19 Si 1.86801 * 119.99955 * 184.42837 * 17 15 14 20 20 H 1.48499 * 109.47297 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47484 * 119.99853 * 19 17 15 22 22 H 1.48500 * 109.47168 * 239.99756 * 19 17 15 23 23 C 1.38243 * 119.95260 * 35.44868 * 10 9 7 24 24 C 1.54993 * 102.09001 * 20.88535 * 5 4 2 25 25 O 1.43738 * 109.88154 * 238.99330 * 2 1 3 26 26 H 1.09001 * 109.46785 * 179.55213 * 1 2 3 27 27 H 1.09001 * 109.46941 * 299.55163 * 1 2 3 28 28 H 1.08998 * 109.47003 * 59.55132 * 1 2 3 29 29 H 1.09005 * 110.48588 * 2.84690 * 4 2 1 30 30 H 1.09003 * 110.48832 * 240.20661 * 4 2 1 31 31 H 0.96990 * 120.00011 * 355.69127 * 9 7 5 32 32 H 1.08000 * 119.78292 * 359.97438 * 11 10 9 33 33 H 1.08001 * 119.84131 * 180.25329 * 12 11 10 34 34 H 1.08004 * 120.05672 * 180.02562 * 13 12 11 35 35 H 0.96998 * 119.99959 * 180.02562 * 18 17 15 36 36 H 1.08005 * 120.15958 * 359.97438 * 23 10 9 37 37 H 1.09007 * 110.62320 * 81.47500 * 24 5 4 38 38 H 1.09000 * 110.62138 * 204.47159 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0572 -0.7477 1.2400 5 6 2.9244 -1.8888 0.6550 6 1 2.3613 -2.8208 0.6075 7 6 4.1890 -2.0675 1.4550 8 8 4.3563 -1.4326 2.4748 9 7 5.1340 -2.9330 1.0372 10 6 6.3460 -3.0331 1.7294 11 6 7.5266 -3.2797 1.0322 12 6 8.7324 -3.3751 1.7065 13 6 8.7766 -3.2326 3.0753 14 6 7.5911 -2.9893 3.7937 15 6 7.6286 -2.8413 5.1994 16 1 6.9550 -2.1530 5.6881 17 6 8.5386 -3.5866 5.9574 18 7 9.4127 -4.3552 5.3599 19 14 8.5054 -3.4844 7.8223 20 1 7.4313 -2.5514 8.2478 21 1 8.2434 -4.8324 8.3874 22 1 9.8155 -2.9875 8.3142 23 6 6.3693 -2.8928 3.1045 24 6 3.2399 -1.3601 -0.7674 25 8 2.0188 -0.6963 -1.1586 26 1 -0.3633 -1.0277 -0.0080 27 1 -0.3633 0.5069 0.8940 28 1 -0.3633 0.5208 -0.8859 29 1 1.2294 -1.1564 1.8196 30 1 2.6645 -0.0843 1.8559 31 1 4.9739 -3.4863 0.2569 32 1 7.5018 -3.3933 -0.0415 33 1 9.6425 -3.5625 1.1561 34 1 9.7195 -3.3074 3.5967 35 1 10.0433 -4.8721 5.8853 36 1 5.4539 -2.7056 3.6463 37 1 4.0690 -0.6531 -0.7391 38 1 3.4614 -2.1859 -1.4435 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313498592.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:27 Heat of formation + Delta-G solvation = -87.539501 kcal Electronic energy + Delta-G solvation = -20718.685000 eV Core-core repulsion = 17524.582139 eV Total energy + Delta-G solvation = -3194.102861 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.70932 -40.13306 -38.83059 -36.21966 -34.85478 -33.44029 -32.74503 -31.73692 -29.85352 -27.27428 -26.88965 -24.91572 -23.03485 -22.64388 -21.97253 -20.93032 -19.54842 -18.61178 -17.48285 -17.24146 -16.80136 -16.44017 -16.41792 -16.32525 -15.87687 -15.11870 -14.84157 -14.53238 -14.36908 -13.99860 -13.60338 -13.46323 -13.31846 -13.01167 -12.95617 -12.88994 -12.81456 -12.36800 -12.16092 -12.02937 -11.84809 -11.78038 -11.51235 -11.22695 -10.86723 -10.74870 -10.60612 -9.33039 -8.76574 -8.49077 -6.42948 0.84418 0.97471 1.35663 1.43988 1.51296 1.69319 2.11407 2.22495 2.77607 2.85093 3.28752 3.64056 3.72733 3.81040 3.97452 4.13019 4.17883 4.44817 4.47554 4.60340 4.65210 4.66705 4.81727 4.93983 4.97310 5.05323 5.09229 5.12038 5.13897 5.20881 5.30197 5.35678 5.75661 5.83657 5.84415 6.06401 6.15361 6.34887 6.58515 6.70588 6.95516 7.00380 7.26711 8.40858 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.027739 B = 0.003997 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.159759 B = 7003.647222 C = 7869.444351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 H 0.068 0.932 4 C -0.139 4.139 5 C -0.132 4.132 6 H 0.140 0.860 7 C 0.511 3.489 8 O -0.563 6.563 9 N -0.653 5.653 10 C 0.145 3.855 11 C -0.234 4.234 12 C -0.099 4.099 13 C -0.186 4.186 14 C 0.081 3.919 15 C -0.505 4.505 16 H 0.060 0.940 17 C 0.031 3.969 18 N -0.839 5.839 19 Si 0.986 3.014 20 H -0.267 1.267 21 H -0.263 1.263 22 H -0.260 1.260 23 C -0.225 4.225 24 C 0.063 3.937 25 O -0.380 6.380 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.423 0.577 32 H 0.137 0.863 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.285 0.715 36 H 0.090 0.910 37 H 0.056 0.944 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.459 2.461 -11.286 16.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.012 3.988 3 H 0.086 0.914 4 C -0.177 4.177 5 C -0.154 4.154 6 H 0.158 0.842 7 C 0.300 3.700 8 O -0.441 6.441 9 N -0.298 5.298 10 C 0.052 3.948 11 C -0.255 4.255 12 C -0.118 4.118 13 C -0.206 4.206 14 C 0.078 3.922 15 C -0.536 4.536 16 H 0.078 0.922 17 C -0.181 4.181 18 N -0.467 5.467 19 Si 0.807 3.193 20 H -0.191 1.191 21 H -0.188 1.188 22 H -0.185 1.185 23 C -0.247 4.247 24 C -0.014 4.014 25 O -0.300 6.300 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.088 0.912 31 H 0.261 0.739 32 H 0.154 0.846 33 H 0.142 0.858 34 H 0.130 0.870 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.074 0.926 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.306 2.776 -10.760 16.580 hybrid contribution 0.363 -0.249 1.038 1.128 sum -11.943 2.526 -9.722 15.605 Atomic orbital electron populations 1.21922 0.91782 1.03373 1.03239 1.22872 0.96599 0.95616 0.83693 0.91405 1.22969 0.99762 0.96548 0.98426 1.22905 0.92918 1.03260 0.96297 0.84210 1.21074 0.85238 0.78313 0.85407 1.90742 1.79097 1.47810 1.26445 1.43322 1.14216 1.40632 1.31675 1.17558 0.85699 1.01113 0.90429 1.20585 0.90712 1.15046 0.99154 1.20924 0.97439 0.99411 0.93982 1.21590 0.98506 1.06980 0.93513 1.17889 0.91095 0.89380 0.93827 1.19715 1.18143 1.23186 0.92582 0.92197 1.26670 0.92619 0.92927 1.05872 1.69822 1.15428 1.22205 1.39199 0.85105 0.79211 0.79108 0.75884 1.19082 1.18788 1.18487 1.21228 0.97160 1.13000 0.93264 1.23567 0.87617 0.97498 0.92688 1.88873 1.39454 1.67882 1.33764 0.91431 0.89971 0.91467 0.88549 0.91220 0.73906 0.84564 0.85777 0.87032 0.90438 0.89145 0.92563 0.85111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.37 71.98 0.67 -1.45 16 2 C 0.07 1.35 4.05 30.97 0.13 1.48 16 3 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 4 C -0.14 -3.12 6.02 31.58 0.19 -2.93 16 5 C -0.13 -2.92 3.52 -10.24 -0.04 -2.96 16 6 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 7 C 0.51 16.96 7.00 87.66 0.61 17.57 16 8 O -0.56 -25.03 12.97 -3.05 -0.04 -25.07 16 9 N -0.65 -21.01 5.28 -303.63 -1.60 -22.61 16 10 C 0.15 6.32 6.29 38.10 0.24 6.56 16 11 C -0.23 -9.46 9.97 22.58 0.23 -9.24 16 12 C -0.10 -4.44 10.02 22.20 0.22 -4.22 16 13 C -0.19 -10.02 8.67 22.75 0.20 -9.82 16 14 C 0.08 4.65 5.55 -21.31 -0.12 4.53 16 15 C -0.51 -29.66 9.04 23.46 0.21 -29.45 16 16 H 0.06 3.54 7.85 -2.91 -0.02 3.52 16 17 C 0.03 1.66 5.42 85.25 0.46 2.12 16 18 N -0.84 -45.43 10.60 21.82 0.23 -45.20 16 19 Si 0.99 41.03 29.56 68.60 2.03 43.05 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 22 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 23 C -0.23 -12.03 8.43 22.85 0.19 -11.84 16 24 C 0.06 1.20 7.12 72.66 0.52 1.72 16 25 O -0.38 -8.08 11.19 -148.98 -1.67 -9.74 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 27 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.10 1.88 7.70 -2.38 -0.02 1.86 16 30 H 0.07 1.97 6.94 -2.39 -0.02 1.95 16 31 H 0.42 9.40 8.82 -92.72 -0.82 8.58 16 32 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 33 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 34 H 0.11 6.32 6.13 -2.91 -0.02 6.30 16 35 H 0.28 13.90 8.30 -92.71 -0.77 13.13 16 36 H 0.09 5.12 6.25 -2.91 -0.02 5.10 16 37 H 0.06 1.21 8.04 -2.38 -0.02 1.19 16 38 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -71.36 316.39 2.92 -68.43 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.26 Total: 29.07 kcal Atomic # 6 Polarization: -41.64 SS G_CDS: 3.72 Total: -37.93 kcal Atomic # 7 Polarization: -66.44 SS G_CDS: -1.37 Total: -67.81 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -1.71 Total: -34.81 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.05 kcal Total: -71.36 2.92 -68.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313498592.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.109 kcal (2) G-P(sol) polarization free energy of solvation -71.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds