Wall clock time and date at job start Mon Mar 30 2020 02:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 115.56218 * 2 1 4 4 C 1.53072 * 117.51109 * 214.29795 * 2 1 3 5 5 C 1.53002 * 117.49837 * 145.68922 * 2 1 3 6 6 H 1.08998 * 117.49756 * 214.99815 * 5 2 1 7 7 C 1.52993 * 117.50124 * 0.02562 * 5 2 1 8 8 N 1.46501 * 109.47601 * 184.91132 * 7 5 2 9 9 S 1.65594 * 120.00299 * 164.99755 * 8 7 5 10 10 O 1.42106 * 104.27725 * 308.92978 * 9 8 7 11 11 O 1.42099 * 104.27790 * 181.07162 * 9 8 7 12 12 C 1.81400 * 104.44941 * 65.00141 * 9 8 7 13 13 C 1.53000 * 109.47353 * 180.02562 * 12 9 8 14 14 C 1.52999 * 109.47135 * 59.99639 * 13 12 9 15 15 C 1.53005 * 109.46791 * 300.00279 * 13 12 9 16 16 C 1.50694 * 109.47516 * 180.02562 * 13 12 9 17 17 H 1.08002 * 120.00122 * 5.40857 * 16 13 12 18 18 C 1.37880 * 120.00413 * 185.41306 * 16 13 12 19 19 N 1.31513 * 120.00156 * 150.62760 * 18 16 13 20 20 Si 1.86804 * 119.99409 * 330.89997 * 18 16 13 21 21 H 1.48497 * 109.46694 * 179.72466 * 20 18 16 22 22 H 1.48501 * 109.46927 * 299.72380 * 20 18 16 23 23 H 1.48495 * 109.47142 * 59.72761 * 20 18 16 24 24 H 1.09001 * 109.47117 * 274.31089 * 1 2 3 25 25 H 1.08997 * 109.47036 * 34.31086 * 1 2 3 26 26 H 1.08997 * 109.47247 * 154.31156 * 1 2 3 27 27 H 1.09011 * 117.49182 * 145.03820 * 4 2 1 28 28 H 1.09000 * 117.53827 * 359.97438 * 4 2 1 29 29 H 1.09000 * 109.47084 * 64.90640 * 7 5 2 30 30 H 1.09007 * 109.46994 * 304.91360 * 7 5 2 31 31 H 0.97003 * 119.99491 * 344.99908 * 8 7 5 32 32 H 1.09000 * 109.46976 * 60.00243 * 12 9 8 33 33 H 1.09004 * 109.47136 * 300.00168 * 12 9 8 34 34 H 1.08995 * 109.47189 * 172.49729 * 14 13 12 35 35 H 1.09002 * 109.47362 * 292.49600 * 14 13 12 36 36 H 1.08997 * 109.46590 * 52.50058 * 14 13 12 37 37 H 1.09002 * 109.46871 * 303.53246 * 15 13 12 38 38 H 1.08992 * 109.47447 * 63.53094 * 15 13 12 39 39 H 1.09000 * 109.47109 * 183.53433 * 15 13 12 40 40 H 0.96995 * 120.00065 * 355.23609 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2371 -1.1216 -0.7650 5 6 2.2365 -1.1210 0.7650 6 1 3.1713 -0.8751 1.2685 7 6 1.3589 -2.1565 1.4709 8 7 2.2059 -3.0723 2.2392 9 16 1.5326 -4.0546 3.3897 10 8 0.7616 -3.1736 4.1951 11 8 2.6363 -4.7665 3.9323 12 6 0.4520 -5.1721 2.4546 13 6 -0.2366 -6.1406 3.4183 14 6 -1.0717 -5.3491 4.4268 15 6 0.8213 -6.9581 4.1623 16 6 -1.1337 -7.0693 2.6415 17 1 -1.1399 -7.0367 1.5620 18 6 -1.9468 -7.9608 3.3088 19 7 -3.0864 -8.3398 2.7727 20 14 -1.4332 -8.6243 4.9778 21 1 -2.4758 -9.5531 5.4833 22 1 -0.1446 -9.3506 4.8465 23 1 -1.2710 -7.4966 5.9302 24 1 -0.3633 0.0772 1.0248 25 1 -0.3633 0.8488 -0.5793 26 1 -0.3633 -0.9261 -0.4455 27 1 3.1724 -0.8756 -1.2680 28 1 1.6126 -1.8599 -1.2681 29 1 0.7939 -2.7204 0.7288 30 1 0.6683 -1.6489 2.1445 31 1 3.1613 -3.1031 2.0738 32 1 1.0469 -5.7357 1.7359 33 1 -0.3019 -4.5897 1.9249 34 1 -1.6655 -6.0382 5.0272 35 1 -0.4098 -4.7777 5.0777 36 1 -1.7346 -4.6674 3.8939 37 1 1.4562 -7.4728 3.4411 38 1 1.4312 -6.2928 4.7734 39 1 0.3303 -7.6911 4.8023 40 1 -3.3878 -7.9408 1.9417 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331807238.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:00 Heat of formation + Delta-G solvation = -49.913935 kcal Electronic energy + Delta-G solvation = -20464.498644 eV Core-core repulsion = 17407.471302 eV Total energy + Delta-G solvation = -3057.027342 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.60951 -36.67038 -36.62764 -35.46588 -34.38269 -32.02107 -28.77872 -27.32637 -26.37359 -26.31499 -24.52312 -21.81514 -20.23716 -19.64692 -18.78210 -17.38721 -16.82703 -16.74153 -15.68031 -15.41256 -14.77162 -14.51150 -14.09656 -13.94845 -13.35380 -13.22555 -13.15445 -12.78446 -12.48447 -12.39364 -12.02584 -11.98132 -11.68704 -11.57917 -11.48540 -11.31631 -11.11934 -10.97162 -10.60298 -10.31131 -10.16099 -10.09638 -9.93785 -9.90576 -9.30902 -9.02760 -8.92474 -8.16469 -6.57770 -4.14534 0.72318 3.04490 3.35937 3.41293 3.51695 3.62051 4.16239 4.35629 4.43833 4.54434 4.60545 4.71713 4.95380 5.06003 5.07325 5.24088 5.40081 5.49810 5.53364 5.56403 5.59811 5.65321 5.79658 5.87012 6.01809 6.04668 6.07940 6.24582 6.34252 6.46768 6.52649 6.73783 6.89774 7.06331 7.18147 7.35898 8.01916 8.28276 8.79097 9.47663 10.77704 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.026870 B = 0.005245 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.797034 B = 5336.833757 C = 5866.190998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.146 4.146 3 H 0.105 0.895 4 C -0.176 4.176 5 C -0.158 4.158 6 H 0.111 0.889 7 C 0.146 3.854 8 N -1.127 6.127 9 S 2.590 3.410 10 O -0.963 6.963 11 O -0.965 6.965 12 C -0.573 4.573 13 C 0.060 3.940 14 C -0.170 4.170 15 C -0.180 4.180 16 C -0.603 4.603 17 H 0.061 0.939 18 C 0.046 3.954 19 N -0.884 5.884 20 Si 1.038 2.962 21 H -0.296 1.296 22 H -0.283 1.283 23 H -0.273 1.273 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.412 0.588 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.066 0.934 35 H 0.038 0.962 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.044 0.956 39 H 0.052 0.948 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.357 14.222 -5.495 17.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.165 4.165 3 H 0.123 0.877 4 C -0.213 4.213 5 C -0.178 4.178 6 H 0.129 0.871 7 C 0.019 3.981 8 N -0.884 5.884 9 S 2.688 3.312 10 O -0.953 6.953 11 O -0.956 6.956 12 C -0.706 4.706 13 C 0.057 3.943 14 C -0.228 4.228 15 C -0.237 4.237 16 C -0.641 4.641 17 H 0.080 0.920 18 C -0.162 4.162 19 N -0.515 5.515 20 Si 0.870 3.130 21 H -0.224 1.224 22 H -0.211 1.211 23 H -0.200 1.200 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.112 0.888 28 H 0.116 0.884 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.246 0.754 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.878 13.266 -3.355 16.312 hybrid contribution 0.739 0.822 -2.077 2.353 sum 9.617 14.088 -5.433 17.902 Atomic orbital electron populations 1.21426 0.92564 1.02323 1.02460 1.22394 0.95707 0.94325 1.04104 0.87675 1.23263 1.02672 1.01686 0.93680 1.22532 1.01443 0.99763 0.94033 0.87103 1.20828 0.92304 0.90081 0.94852 1.55759 1.18456 1.55435 1.58779 1.05674 0.75561 0.75052 0.74922 1.93551 1.72645 1.63677 1.65449 1.93557 1.51666 1.73966 1.76391 1.30382 1.13633 1.13408 1.13155 1.18182 0.92771 0.92086 0.91289 1.22623 1.00842 1.00139 0.99179 1.22770 0.99058 1.01236 1.00590 1.21571 1.25650 1.22982 0.93895 0.92036 1.25679 0.92200 0.94514 1.03821 1.70862 1.16470 1.44280 1.19875 0.84372 0.74886 0.76894 0.76827 1.22353 1.21063 1.20002 0.91627 0.92011 0.92107 0.88765 0.88354 0.91669 0.89811 0.75440 0.85920 0.86089 0.91495 0.94311 0.92608 0.92024 0.93676 0.92939 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 9.20 37.16 0.34 -0.73 16 2 C -0.15 -1.21 6.41 -90.58 -0.58 -1.79 16 3 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.18 -1.44 9.82 -26.69 -0.26 -1.70 16 5 C -0.16 -1.48 5.83 -90.62 -0.53 -2.01 16 6 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 7 C 0.15 1.67 5.49 -4.04 -0.02 1.65 16 8 N -1.13 -14.57 5.89 -10.61 -0.06 -14.64 16 9 S 2.59 45.16 4.49 -107.50 -0.48 44.67 16 10 O -0.96 -19.07 15.28 -57.54 -0.88 -19.95 16 11 O -0.97 -18.98 15.77 -57.54 -0.91 -19.89 16 12 C -0.57 -10.70 5.01 37.16 0.19 -10.52 16 13 C 0.06 1.39 0.52 -155.66 -0.08 1.31 16 14 C -0.17 -3.91 7.38 37.16 0.27 -3.64 16 15 C -0.18 -4.08 7.33 37.16 0.27 -3.80 16 16 C -0.60 -16.23 8.42 -34.44 -0.29 -16.52 16 17 H 0.06 1.74 7.99 -52.49 -0.42 1.32 16 18 C 0.05 1.29 5.05 -17.82 -0.09 1.20 16 19 N -0.88 -26.18 13.70 55.43 0.76 -25.42 16 20 Si 1.04 25.38 23.47 -169.99 -3.99 21.39 16 21 H -0.30 -7.29 7.11 56.52 0.40 -6.88 16 22 H -0.28 -6.56 6.72 56.52 0.38 -6.18 16 23 H -0.27 -6.22 5.78 56.52 0.33 -5.89 16 24 H 0.06 0.56 7.84 -51.93 -0.41 0.15 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.50 7.90 -51.93 -0.41 0.09 16 27 H 0.09 0.67 8.14 -51.92 -0.42 0.24 16 28 H 0.10 0.81 7.94 -51.93 -0.41 0.39 16 29 H 0.07 0.68 7.87 -51.93 -0.41 0.28 16 30 H 0.08 1.02 7.32 -51.93 -0.38 0.64 16 31 H 0.41 4.50 8.62 -34.47 -0.30 4.20 16 32 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 33 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 34 H 0.07 1.58 4.46 -51.93 -0.23 1.35 16 35 H 0.04 0.83 6.02 -51.93 -0.31 0.52 16 36 H 0.05 1.22 8.13 -51.93 -0.42 0.80 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.04 0.96 5.72 -51.93 -0.30 0.66 16 39 H 0.05 1.21 2.28 -51.93 -0.12 1.09 16 40 H 0.27 7.93 8.73 -40.82 -0.36 7.57 16 LS Contribution 316.47 15.07 4.77 4.77 Total: -1.00 -32.23 316.47 -7.90 -40.13 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -6.33 Total: 5.49 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: -0.78 Total: -36.55 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.70 Total: -40.05 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -1.79 Total: -39.84 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -3.99 Total: 21.39 kcal Atomic # 16 Polarization: 45.16 SS G_CDS: -0.48 Total: 44.67 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.23 -7.90 -40.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331807238.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.787 kcal (2) G-P(sol) polarization free energy of solvation -32.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds