Wall clock time and date at job start Mon Mar 30 2020 02:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 115.56218 * 2 1 4 4 C 1.53072 * 117.51109 * 214.29795 * 2 1 3 5 5 C 1.53002 * 117.49837 * 145.68922 * 2 1 3 6 6 H 1.08998 * 117.49756 * 214.99815 * 5 2 1 7 7 C 1.52993 * 117.50124 * 0.02562 * 5 2 1 8 8 N 1.46501 * 109.47601 * 184.91132 * 7 5 2 9 9 S 1.65594 * 120.00299 * 164.99755 * 8 7 5 10 10 O 1.42106 * 104.27725 * 308.92978 * 9 8 7 11 11 O 1.42099 * 104.27790 * 181.07162 * 9 8 7 12 12 C 1.81400 * 104.44941 * 65.00141 * 9 8 7 13 13 C 1.53000 * 109.47353 * 180.02562 * 12 9 8 14 14 C 1.52999 * 109.47135 * 59.99639 * 13 12 9 15 15 C 1.53005 * 109.46791 * 300.00279 * 13 12 9 16 16 C 1.50694 * 109.47516 * 180.02562 * 13 12 9 17 17 H 1.08002 * 120.00122 * 5.40857 * 16 13 12 18 18 C 1.37880 * 120.00413 * 185.41306 * 16 13 12 19 19 N 1.31513 * 120.00156 * 150.62760 * 18 16 13 20 20 Si 1.86804 * 119.99409 * 330.89997 * 18 16 13 21 21 H 1.48497 * 109.46694 * 179.72466 * 20 18 16 22 22 H 1.48501 * 109.46927 * 299.72380 * 20 18 16 23 23 H 1.48495 * 109.47142 * 59.72761 * 20 18 16 24 24 H 1.09001 * 109.47117 * 274.31089 * 1 2 3 25 25 H 1.08997 * 109.47036 * 34.31086 * 1 2 3 26 26 H 1.08997 * 109.47247 * 154.31156 * 1 2 3 27 27 H 1.09011 * 117.49182 * 145.03820 * 4 2 1 28 28 H 1.09000 * 117.53827 * 359.97438 * 4 2 1 29 29 H 1.09000 * 109.47084 * 64.90640 * 7 5 2 30 30 H 1.09007 * 109.46994 * 304.91360 * 7 5 2 31 31 H 0.97003 * 119.99491 * 344.99908 * 8 7 5 32 32 H 1.09000 * 109.46976 * 60.00243 * 12 9 8 33 33 H 1.09004 * 109.47136 * 300.00168 * 12 9 8 34 34 H 1.08995 * 109.47189 * 172.49729 * 14 13 12 35 35 H 1.09002 * 109.47362 * 292.49600 * 14 13 12 36 36 H 1.08997 * 109.46590 * 52.50058 * 14 13 12 37 37 H 1.09002 * 109.46871 * 303.53246 * 15 13 12 38 38 H 1.08992 * 109.47447 * 63.53094 * 15 13 12 39 39 H 1.09000 * 109.47109 * 183.53433 * 15 13 12 40 40 H 0.96995 * 120.00065 * 355.23609 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2371 -1.1216 -0.7650 5 6 2.2365 -1.1210 0.7650 6 1 3.1713 -0.8751 1.2685 7 6 1.3589 -2.1565 1.4709 8 7 2.2059 -3.0723 2.2392 9 16 1.5326 -4.0546 3.3897 10 8 0.7616 -3.1736 4.1951 11 8 2.6363 -4.7665 3.9323 12 6 0.4520 -5.1721 2.4546 13 6 -0.2366 -6.1406 3.4183 14 6 -1.0717 -5.3491 4.4268 15 6 0.8213 -6.9581 4.1623 16 6 -1.1337 -7.0693 2.6415 17 1 -1.1399 -7.0367 1.5620 18 6 -1.9468 -7.9608 3.3088 19 7 -3.0864 -8.3398 2.7727 20 14 -1.4332 -8.6243 4.9778 21 1 -2.4758 -9.5531 5.4833 22 1 -0.1446 -9.3506 4.8465 23 1 -1.2710 -7.4966 5.9302 24 1 -0.3633 0.0772 1.0248 25 1 -0.3633 0.8488 -0.5793 26 1 -0.3633 -0.9261 -0.4455 27 1 3.1724 -0.8756 -1.2680 28 1 1.6126 -1.8599 -1.2681 29 1 0.7939 -2.7204 0.7288 30 1 0.6683 -1.6489 2.1445 31 1 3.1613 -3.1031 2.0738 32 1 1.0469 -5.7357 1.7359 33 1 -0.3019 -4.5897 1.9249 34 1 -1.6655 -6.0382 5.0272 35 1 -0.4098 -4.7777 5.0777 36 1 -1.7346 -4.6674 3.8939 37 1 1.4562 -7.4728 3.4411 38 1 1.4312 -6.2928 4.7734 39 1 0.3303 -7.6911 4.8023 40 1 -3.3878 -7.9408 1.9417 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331807238.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:00 Heat of formation + Delta-G solvation = -73.088475 kcal Electronic energy + Delta-G solvation = -20465.503568 eV Core-core repulsion = 17407.471302 eV Total energy + Delta-G solvation = -3058.032266 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.33361 -38.43950 -38.14153 -36.96868 -35.40189 -34.11817 -29.45057 -28.90875 -28.13858 -27.27740 -26.59076 -22.49081 -21.66154 -20.80541 -20.17494 -19.03540 -18.53687 -17.70181 -17.10423 -16.60115 -16.54348 -15.59204 -15.14341 -15.10231 -14.92212 -14.75555 -14.49503 -14.16485 -13.97056 -13.88467 -13.28991 -13.16947 -13.12156 -13.08241 -12.79423 -12.67356 -12.34940 -12.31351 -12.09727 -12.00418 -11.77583 -11.68474 -11.10214 -10.98483 -10.80269 -10.74876 -10.33875 -10.23701 -8.76007 -6.32892 -0.68506 1.42774 1.45696 1.68892 1.80777 2.43714 2.73970 2.84985 2.93983 3.23664 3.67560 3.73719 3.89708 3.92685 4.04915 4.17733 4.27072 4.41517 4.46530 4.53494 4.60088 4.69565 4.71185 4.74921 4.83089 4.94649 4.96562 4.98485 5.05594 5.13616 5.22308 5.29411 5.40155 5.45411 5.55145 5.99805 6.07889 6.10837 6.58399 7.35372 8.58073 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.026870 B = 0.005245 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.797034 B = 5336.833757 C = 5866.190998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.144 4.144 3 H 0.118 0.882 4 C -0.170 4.170 5 C -0.168 4.168 6 H 0.118 0.882 7 C 0.136 3.864 8 N -1.110 6.110 9 S 2.618 3.382 10 O -0.986 6.986 11 O -0.985 6.985 12 C -0.582 4.582 13 C 0.048 3.952 14 C -0.173 4.173 15 C -0.186 4.186 16 C -0.600 4.600 17 H 0.036 0.964 18 C 0.002 3.998 19 N -0.919 5.919 20 Si 1.061 2.939 21 H -0.302 1.302 22 H -0.263 1.263 23 H -0.248 1.248 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.108 0.892 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.425 0.575 32 H 0.136 0.864 33 H 0.131 0.869 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.171 15.624 -5.503 19.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.163 4.163 3 H 0.136 0.864 4 C -0.207 4.207 5 C -0.188 4.188 6 H 0.136 0.864 7 C 0.010 3.990 8 N -0.872 5.872 9 S 2.714 3.286 10 O -0.975 6.975 11 O -0.975 6.975 12 C -0.714 4.714 13 C 0.045 3.955 14 C -0.231 4.231 15 C -0.243 4.243 16 C -0.638 4.638 17 H 0.054 0.946 18 C -0.201 4.201 19 N -0.552 5.552 20 Si 0.888 3.112 21 H -0.231 1.231 22 H -0.189 1.189 23 H -0.173 1.173 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.126 0.874 28 H 0.115 0.885 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.261 0.739 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.709 14.666 -3.372 18.470 hybrid contribution 0.193 0.481 -2.196 2.256 sum 10.902 15.147 -5.568 19.476 Atomic orbital electron populations 1.21472 0.92823 1.02699 1.02235 1.22496 0.95612 0.94789 1.03358 0.86371 1.23337 1.03223 1.01388 0.92753 1.22488 1.01627 0.99914 0.94743 0.86357 1.21043 0.92598 0.90473 0.94893 1.55326 1.19191 1.54441 1.58205 1.04618 0.74658 0.74566 0.74797 1.93524 1.73417 1.64028 1.66570 1.93524 1.51984 1.74782 1.77251 1.30391 1.14570 1.13525 1.12919 1.18169 0.92880 0.92521 0.91935 1.22625 1.01060 1.00076 0.99332 1.22799 0.99079 1.01434 1.00939 1.21752 1.25748 1.23231 0.93020 0.94576 1.26744 0.91919 0.94944 1.06444 1.70963 1.18134 1.45885 1.20224 0.84096 0.75278 0.77436 0.74363 1.23073 1.18915 1.17343 0.92295 0.90857 0.92478 0.87375 0.88497 0.90743 0.90609 0.73896 0.84548 0.85046 0.92582 0.92839 0.92456 0.91252 0.92235 0.93375 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.20 71.98 0.66 -1.33 16 2 C -0.14 -2.03 6.41 -10.77 -0.07 -2.09 16 3 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.17 -2.32 9.82 30.62 0.30 -2.02 16 5 C -0.17 -2.73 5.83 -10.79 -0.06 -2.79 16 6 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 7 C 0.14 2.83 5.49 86.38 0.47 3.31 16 8 N -1.11 -26.06 5.89 -187.49 -1.10 -27.16 16 9 S 2.62 85.71 4.49 -56.49 -0.25 85.46 16 10 O -0.99 -37.17 15.28 -127.65 -1.95 -39.12 16 11 O -0.99 -36.37 15.77 -127.65 -2.01 -38.39 16 12 C -0.58 -20.87 5.01 71.98 0.36 -20.51 16 13 C 0.05 2.16 0.52 -52.93 -0.03 2.13 16 14 C -0.17 -7.75 7.38 71.98 0.53 -7.22 16 15 C -0.19 -8.04 7.33 71.98 0.53 -7.51 16 16 C -0.60 -32.34 8.42 25.60 0.22 -32.12 16 17 H 0.04 2.08 7.99 -2.91 -0.02 2.06 16 18 C 0.00 0.10 5.05 84.66 0.43 0.52 16 19 N -0.92 -55.64 13.70 21.45 0.29 -55.35 16 20 Si 1.06 50.32 23.47 68.60 1.61 51.93 16 21 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 22 H -0.26 -11.52 6.72 99.48 0.67 -10.85 16 23 H -0.25 -10.70 5.78 99.48 0.57 -10.12 16 24 H 0.06 0.94 7.84 -2.39 -0.02 0.92 16 25 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 26 H 0.06 0.87 7.90 -2.39 -0.02 0.85 16 27 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.10 1.36 7.94 -2.39 -0.02 1.34 16 29 H 0.07 1.42 7.87 -2.39 -0.02 1.40 16 30 H 0.08 1.72 7.32 -2.38 -0.02 1.71 16 31 H 0.42 8.09 8.62 -96.74 -0.83 7.26 16 32 H 0.14 4.44 8.14 -2.39 -0.02 4.42 16 33 H 0.13 4.35 8.14 -2.39 -0.02 4.33 16 34 H 0.06 2.58 4.46 -2.39 -0.01 2.57 16 35 H 0.05 2.20 6.02 -2.39 -0.01 2.19 16 36 H 0.06 2.47 8.13 -2.39 -0.02 2.45 16 37 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 38 H 0.06 2.39 5.72 -2.39 -0.01 2.37 16 39 H 0.05 2.11 2.28 -2.39 -0.01 2.10 16 40 H 0.26 15.78 8.73 -92.71 -0.81 14.97 16 Total: -1.00 -68.16 316.47 -0.08 -68.24 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -0.01 Total: 24.03 kcal Atomic # 6 Polarization: -72.98 SS G_CDS: 3.34 Total: -69.64 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -0.81 Total: -82.51 kcal Atomic # 8 Polarization: -73.55 SS G_CDS: -3.96 Total: -77.51 kcal Atomic # 14 Polarization: 50.32 SS G_CDS: 1.61 Total: 51.93 kcal Atomic # 16 Polarization: 85.71 SS G_CDS: -0.25 Total: 85.46 kcal Total: -68.16 -0.08 -68.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331807238.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.845 kcal (2) G-P(sol) polarization free energy of solvation -68.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds