Wall clock time and date at job start Mon Mar 30 2020 02:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 115.54973 * 2 1 4 4 C 1.53001 * 117.51964 * 145.70217 * 2 1 3 5 5 C 1.52999 * 60.00190 * 107.47982 * 4 2 1 6 6 H 1.09003 * 117.51973 * 252.52326 * 5 4 2 7 7 C 1.53002 * 117.49804 * 107.48732 * 5 4 2 8 8 N 1.46493 * 109.46948 * 116.38214 * 7 5 4 9 9 S 1.65598 * 120.00132 * 165.00050 * 8 7 5 10 10 O 1.42101 * 104.28230 * 181.06859 * 9 8 7 11 11 O 1.42103 * 104.27553 * 308.92609 * 9 8 7 12 12 C 1.81407 * 104.45124 * 64.99651 * 9 8 7 13 13 C 1.52994 * 109.47138 * 180.02562 * 12 9 8 14 14 C 1.53001 * 109.47420 * 299.99689 * 13 12 9 15 15 C 1.52996 * 109.47334 * 60.00261 * 13 12 9 16 16 C 1.50705 * 109.46963 * 180.02562 * 13 12 9 17 17 H 1.08005 * 119.99791 * 0.02562 * 16 13 12 18 18 C 1.37874 * 120.00354 * 179.97438 * 16 13 12 19 19 N 1.31517 * 119.99533 * 359.97438 * 18 16 13 20 20 Si 1.86793 * 120.00295 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.47264 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47267 * 119.99950 * 20 18 16 23 23 H 1.48502 * 109.47258 * 239.99953 * 20 18 16 24 24 H 1.09005 * 109.46643 * 205.58082 * 1 2 3 25 25 H 1.08996 * 109.47432 * 325.57979 * 1 2 3 26 26 H 1.09000 * 109.47232 * 85.58579 * 1 2 3 27 27 H 1.09001 * 117.49733 * 214.97413 * 4 2 1 28 28 H 1.08995 * 117.49577 * 359.97438 * 4 2 1 29 29 H 1.09002 * 109.46902 * 236.37757 * 7 5 4 30 30 H 1.08996 * 109.47209 * 356.37519 * 7 5 4 31 31 H 0.97005 * 120.00106 * 344.99633 * 8 7 5 32 32 H 1.09003 * 109.46882 * 300.00742 * 12 9 8 33 33 H 1.09002 * 109.46656 * 60.00223 * 12 9 8 34 34 H 1.09004 * 109.46518 * 60.00085 * 14 13 12 35 35 H 1.08991 * 109.47596 * 180.02562 * 14 13 12 36 36 H 1.09002 * 109.47434 * 300.00680 * 14 13 12 37 37 H 1.08996 * 109.47060 * 59.99727 * 15 13 12 38 38 H 1.09005 * 109.47081 * 179.97438 * 15 13 12 39 39 H 1.09002 * 109.46938 * 299.99565 * 15 13 12 40 40 H 0.97005 * 119.99890 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2370 -1.1210 0.7646 5 6 2.2365 -1.1208 -0.7654 6 1 1.6112 -1.8581 -1.2689 7 6 3.5488 -0.7753 -1.4722 8 7 4.0082 -1.9337 -2.2423 9 16 5.1839 -1.7489 -3.3938 10 8 5.3490 -3.0511 -3.9383 11 8 4.7213 -0.6721 -4.1974 12 6 6.6594 -1.2579 -2.4595 13 6 7.8292 -1.0537 -3.4242 14 6 8.1093 -2.3599 -4.1700 15 6 7.4748 0.0426 -4.4308 16 6 9.0551 -0.6464 -2.6479 17 1 9.0048 -0.5439 -1.5739 18 6 10.2410 -0.4056 -3.3086 19 7 10.3026 -0.5319 -4.6163 20 14 11.7606 0.0986 -2.3464 21 1 11.4306 0.1674 -0.9003 22 1 12.8368 -0.9019 -2.5609 23 1 12.2228 1.4304 -2.8132 24 1 -0.3633 -0.9270 0.4438 25 1 -0.3634 0.8477 0.5809 26 1 -0.3634 0.0791 -1.0246 27 1 3.1721 -0.8750 1.2677 28 1 1.6120 -1.8584 1.2682 29 1 3.3883 0.0675 -2.1446 30 1 4.3021 -0.5100 -0.7305 31 1 3.6238 -2.8089 -2.0777 32 1 6.4600 -0.3271 -1.9284 33 1 6.9116 -2.0388 -1.7421 34 1 7.2227 -2.6549 -4.7314 35 1 8.9430 -2.2146 -4.8569 36 1 8.3617 -3.1410 -3.4528 37 1 7.2754 0.9731 -3.8994 38 1 8.3085 0.1883 -5.1178 39 1 6.5883 -0.2525 -4.9922 40 1 11.1368 -0.3622 -5.0812 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331807253.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:05 Heat of formation + Delta-G solvation = -62.196019 kcal Electronic energy + Delta-G solvation = -20187.327128 eV Core-core repulsion = 17129.767194 eV Total energy + Delta-G solvation = -3057.559934 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.44599 -36.50371 -36.26315 -35.29279 -34.39703 -31.66147 -29.04439 -26.63760 -25.86295 -25.70465 -25.21292 -21.43534 -20.74787 -19.51354 -18.66163 -17.26408 -16.51308 -15.89550 -15.36662 -14.97424 -14.77343 -14.62667 -14.16889 -13.68897 -13.39410 -13.07380 -12.95773 -12.50010 -12.48607 -12.06170 -11.93434 -11.63522 -11.46871 -11.38620 -11.09957 -11.07874 -10.91556 -10.69865 -10.39812 -10.29205 -10.26243 -10.13265 -10.02116 -9.64656 -9.58070 -9.18255 -8.65355 -8.40274 -6.03367 -4.15292 0.88935 3.19150 3.24855 3.33323 3.35847 3.56476 4.29014 4.36752 4.43205 4.61343 4.67883 4.85017 5.02074 5.08524 5.22064 5.30145 5.50418 5.54512 5.60874 5.64864 5.69531 5.71437 5.80406 5.93074 6.04810 6.14850 6.38886 6.71211 6.80729 6.91972 7.03739 7.17141 7.32537 7.51339 7.68182 7.98936 8.10266 8.33433 8.83420 9.50165 10.97963 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.025724 B = 0.004651 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.197107 B = 6018.674589 C = 6616.157750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.150 4.150 3 H 0.108 0.892 4 C -0.175 4.175 5 C -0.157 4.157 6 H 0.111 0.889 7 C 0.146 3.854 8 N -1.129 6.129 9 S 2.594 3.406 10 O -0.965 6.965 11 O -0.965 6.965 12 C -0.582 4.582 13 C 0.081 3.919 14 C -0.164 4.164 15 C -0.163 4.163 16 C -0.501 4.501 17 H 0.059 0.941 18 C 0.064 3.936 19 N -0.883 5.883 20 Si 0.896 3.104 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.283 1.283 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.412 0.588 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.028 0.972 35 H 0.095 0.905 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.095 0.905 39 H 0.028 0.972 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.918 -0.419 8.986 17.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.169 4.169 3 H 0.126 0.874 4 C -0.212 4.212 5 C -0.176 4.176 6 H 0.129 0.871 7 C 0.019 3.981 8 N -0.886 5.886 9 S 2.692 3.308 10 O -0.956 6.956 11 O -0.955 6.955 12 C -0.716 4.716 13 C 0.079 3.921 14 C -0.221 4.221 15 C -0.221 4.221 16 C -0.541 4.541 17 H 0.077 0.923 18 C -0.138 4.138 19 N -0.522 5.522 20 Si 0.724 3.276 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.116 0.884 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.244 0.756 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.046 0.954 35 H 0.114 0.886 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.113 0.887 39 H 0.047 0.953 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.875 -0.351 7.860 16.828 hybrid contribution 1.024 0.024 1.316 1.668 sum -13.851 -0.327 9.176 16.618 Atomic orbital electron populations 1.21368 0.92750 1.01868 1.02023 1.22417 0.95373 0.94841 1.04295 0.87415 1.23275 1.02802 1.01331 0.93779 1.22573 0.98491 1.02590 0.93950 0.87101 1.20831 0.94101 0.88334 0.94811 1.55819 1.57644 1.16386 1.58734 1.05570 0.75806 0.74589 0.74801 1.93552 1.86241 1.39533 1.76257 1.93537 1.79420 1.56983 1.65513 1.30521 1.16945 1.10509 1.13581 1.17938 0.89999 0.93629 0.90564 1.22272 1.02290 0.96508 1.01058 1.22269 1.01008 0.98363 1.00466 1.20986 0.93287 1.46516 0.93270 0.92285 1.24943 0.98740 0.95135 0.94973 1.69817 1.26471 1.48910 1.06956 0.86479 0.82864 0.78211 0.80075 1.19864 1.20962 1.20950 0.92617 0.92093 0.92043 0.88426 0.88756 0.89885 0.91698 0.75560 0.86553 0.86284 0.95352 0.88647 0.94491 0.94510 0.88684 0.95272 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 10.19 37.16 0.38 -0.51 16 2 C -0.15 -1.27 6.13 -90.61 -0.56 -1.83 16 3 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.17 -1.46 9.82 -26.73 -0.26 -1.72 16 5 C -0.16 -1.51 5.55 -90.62 -0.50 -2.02 16 6 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 7 C 0.15 1.72 6.41 -4.04 -0.03 1.70 16 8 N -1.13 -15.34 5.88 -10.62 -0.06 -15.40 16 9 S 2.59 47.93 4.49 -107.50 -0.48 47.45 16 10 O -0.97 -20.32 15.70 -57.54 -0.90 -21.23 16 11 O -0.96 -20.29 15.12 -57.54 -0.87 -21.16 16 12 C -0.58 -11.30 5.01 37.15 0.19 -11.11 16 13 C 0.08 1.96 0.52 -155.66 -0.08 1.88 16 14 C -0.16 -4.05 7.77 37.16 0.29 -3.76 16 15 C -0.16 -4.02 7.78 37.16 0.29 -3.74 16 16 C -0.50 -13.16 8.01 -34.44 -0.28 -13.44 16 17 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 18 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 19 N -0.88 -24.16 9.35 55.43 0.52 -23.64 16 20 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H 0.05 0.37 7.90 -51.93 -0.41 -0.04 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.10 0.79 8.03 -51.93 -0.42 0.37 16 28 H 0.09 0.70 8.05 -51.93 -0.42 0.28 16 29 H 0.08 1.04 7.69 -51.93 -0.40 0.64 16 30 H 0.06 0.69 7.87 -51.93 -0.41 0.28 16 31 H 0.41 4.77 8.62 -34.47 -0.30 4.47 16 32 H 0.12 2.03 8.14 -51.92 -0.42 1.60 16 33 H 0.12 2.11 8.14 -51.92 -0.42 1.68 16 34 H 0.03 0.67 5.46 -51.93 -0.28 0.38 16 35 H 0.09 2.54 6.07 -51.93 -0.31 2.23 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 39 H 0.03 0.68 5.46 -51.93 -0.28 0.40 16 40 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 326.17 15.07 4.92 4.92 Total: -1.00 -31.37 326.17 -9.03 -40.40 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.47 Total: 5.99 kcal Atomic # 6 Polarization: -32.28 SS G_CDS: -0.65 Total: -32.94 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.46 Total: -39.04 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -1.77 Total: -42.38 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 47.93 SS G_CDS: -0.48 Total: 47.45 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.37 -9.03 -40.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331807253.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.797 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds