Wall clock time and date at job start Mon Mar 30 2020 02:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 115.54973 * 2 1 4 4 C 1.53001 * 117.51964 * 145.70217 * 2 1 3 5 5 C 1.52999 * 60.00190 * 107.47982 * 4 2 1 6 6 H 1.09003 * 117.51973 * 252.52326 * 5 4 2 7 7 C 1.53002 * 117.49804 * 107.48732 * 5 4 2 8 8 N 1.46493 * 109.46948 * 116.38214 * 7 5 4 9 9 S 1.65598 * 120.00132 * 165.00050 * 8 7 5 10 10 O 1.42101 * 104.28230 * 181.06859 * 9 8 7 11 11 O 1.42103 * 104.27553 * 308.92609 * 9 8 7 12 12 C 1.81407 * 104.45124 * 64.99651 * 9 8 7 13 13 C 1.52994 * 109.47138 * 180.02562 * 12 9 8 14 14 C 1.53001 * 109.47420 * 299.99689 * 13 12 9 15 15 C 1.52996 * 109.47334 * 60.00261 * 13 12 9 16 16 C 1.50705 * 109.46963 * 180.02562 * 13 12 9 17 17 H 1.08005 * 119.99791 * 0.02562 * 16 13 12 18 18 C 1.37874 * 120.00354 * 179.97438 * 16 13 12 19 19 N 1.31517 * 119.99533 * 359.97438 * 18 16 13 20 20 Si 1.86793 * 120.00295 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.47264 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47267 * 119.99950 * 20 18 16 23 23 H 1.48502 * 109.47258 * 239.99953 * 20 18 16 24 24 H 1.09005 * 109.46643 * 205.58082 * 1 2 3 25 25 H 1.08996 * 109.47432 * 325.57979 * 1 2 3 26 26 H 1.09000 * 109.47232 * 85.58579 * 1 2 3 27 27 H 1.09001 * 117.49733 * 214.97413 * 4 2 1 28 28 H 1.08995 * 117.49577 * 359.97438 * 4 2 1 29 29 H 1.09002 * 109.46902 * 236.37757 * 7 5 4 30 30 H 1.08996 * 109.47209 * 356.37519 * 7 5 4 31 31 H 0.97005 * 120.00106 * 344.99633 * 8 7 5 32 32 H 1.09003 * 109.46882 * 300.00742 * 12 9 8 33 33 H 1.09002 * 109.46656 * 60.00223 * 12 9 8 34 34 H 1.09004 * 109.46518 * 60.00085 * 14 13 12 35 35 H 1.08991 * 109.47596 * 180.02562 * 14 13 12 36 36 H 1.09002 * 109.47434 * 300.00680 * 14 13 12 37 37 H 1.08996 * 109.47060 * 59.99727 * 15 13 12 38 38 H 1.09005 * 109.47081 * 179.97438 * 15 13 12 39 39 H 1.09002 * 109.46938 * 299.99565 * 15 13 12 40 40 H 0.97005 * 119.99890 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2370 -1.1210 0.7646 5 6 2.2365 -1.1208 -0.7654 6 1 1.6112 -1.8581 -1.2689 7 6 3.5488 -0.7753 -1.4722 8 7 4.0082 -1.9337 -2.2423 9 16 5.1839 -1.7489 -3.3938 10 8 5.3490 -3.0511 -3.9383 11 8 4.7213 -0.6721 -4.1974 12 6 6.6594 -1.2579 -2.4595 13 6 7.8292 -1.0537 -3.4242 14 6 8.1093 -2.3599 -4.1700 15 6 7.4748 0.0426 -4.4308 16 6 9.0551 -0.6464 -2.6479 17 1 9.0048 -0.5439 -1.5739 18 6 10.2410 -0.4056 -3.3086 19 7 10.3026 -0.5319 -4.6163 20 14 11.7606 0.0986 -2.3464 21 1 11.4306 0.1674 -0.9003 22 1 12.8368 -0.9019 -2.5609 23 1 12.2228 1.4304 -2.8132 24 1 -0.3633 -0.9270 0.4438 25 1 -0.3634 0.8477 0.5809 26 1 -0.3634 0.0791 -1.0246 27 1 3.1721 -0.8750 1.2677 28 1 1.6120 -1.8584 1.2682 29 1 3.3883 0.0675 -2.1446 30 1 4.3021 -0.5100 -0.7305 31 1 3.6238 -2.8089 -2.0777 32 1 6.4600 -0.3271 -1.9284 33 1 6.9116 -2.0388 -1.7421 34 1 7.2227 -2.6549 -4.7314 35 1 8.9430 -2.2146 -4.8569 36 1 8.3617 -3.1410 -3.4528 37 1 7.2754 0.9731 -3.8994 38 1 8.3085 0.1883 -5.1178 39 1 6.5883 -0.2525 -4.9922 40 1 11.1368 -0.3622 -5.0812 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331807253.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:04 Heat of formation + Delta-G solvation = -82.595194 kcal Electronic energy + Delta-G solvation = -20188.211703 eV Core-core repulsion = 17129.767194 eV Total energy + Delta-G solvation = -3058.444508 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.17868 -38.11936 -38.07715 -36.88758 -35.44461 -33.62634 -29.71684 -28.31422 -27.68262 -27.25841 -26.72296 -22.16036 -21.59394 -21.18907 -20.10096 -18.70860 -17.90072 -17.55885 -16.91421 -16.61194 -16.18239 -15.47843 -15.23126 -15.01571 -14.67457 -14.43326 -14.35141 -14.00687 -13.81010 -13.50990 -13.08966 -12.99202 -12.90208 -12.83925 -12.73701 -12.50228 -12.24820 -12.21960 -12.17820 -12.10772 -11.95144 -11.55999 -11.41184 -11.01645 -10.78248 -10.61924 -10.41687 -10.17817 -8.02651 -6.21259 -0.59274 1.43391 1.46444 1.55950 1.91025 2.44617 2.82988 2.90216 3.19731 3.32408 3.70930 3.90896 3.96979 4.06233 4.20430 4.24339 4.47051 4.50151 4.61281 4.77225 4.84276 4.87327 4.88767 4.98187 4.99861 5.01051 5.06411 5.10589 5.25279 5.32606 5.39779 5.48580 5.51685 5.65393 5.98284 6.11936 6.15675 6.34759 6.83859 7.47155 8.97387 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.025724 B = 0.004651 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.197107 B = 6018.674589 C = 6616.157750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.150 4.150 3 H 0.109 0.891 4 C -0.167 4.167 5 C -0.168 4.168 6 H 0.113 0.887 7 C 0.136 3.864 8 N -1.112 6.112 9 S 2.615 3.385 10 O -0.994 6.994 11 O -0.992 6.992 12 C -0.585 4.585 13 C 0.067 3.933 14 C -0.160 4.160 15 C -0.159 4.159 16 C -0.516 4.516 17 H 0.064 0.936 18 C 0.017 3.983 19 N -0.908 5.908 20 Si 0.955 3.045 21 H -0.265 1.265 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.423 0.577 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.070 0.930 39 H 0.033 0.967 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.869 -0.314 11.124 19.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.169 4.169 3 H 0.127 0.873 4 C -0.203 4.203 5 C -0.188 4.188 6 H 0.131 0.869 7 C 0.010 3.990 8 N -0.873 5.873 9 S 2.712 3.288 10 O -0.984 6.984 11 O -0.982 6.982 12 C -0.718 4.718 13 C 0.065 3.935 14 C -0.218 4.218 15 C -0.217 4.217 16 C -0.555 4.555 17 H 0.082 0.918 18 C -0.183 4.183 19 N -0.547 5.547 20 Si 0.781 3.219 21 H -0.189 1.189 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.119 0.881 28 H 0.124 0.876 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.259 0.741 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.051 0.949 35 H 0.089 0.911 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.827 -0.253 10.006 18.726 hybrid contribution 1.250 -0.003 0.669 1.418 sum -14.577 -0.256 10.675 18.070 Atomic orbital electron populations 1.21391 0.91897 1.02647 1.02107 1.22537 0.96113 0.94755 1.03523 0.87290 1.23357 1.03093 1.01253 0.92644 1.22500 0.97700 1.03754 0.94813 0.86857 1.21081 0.95833 0.87195 0.94885 1.55342 1.56080 1.17781 1.58070 1.04663 0.75876 0.73352 0.74897 1.93506 1.86812 1.40634 1.77433 1.93500 1.79822 1.57923 1.66944 1.30448 1.15783 1.12459 1.13109 1.17940 0.91527 0.92782 0.91217 1.22207 1.01513 0.97246 1.00828 1.22197 1.00121 0.99011 1.00376 1.21332 0.94212 1.46274 0.93673 0.91822 1.25688 1.01476 0.95355 0.95758 1.69959 1.26949 1.49604 1.08208 0.85549 0.79535 0.77556 0.79227 1.18904 1.21047 1.20965 0.91990 0.91194 0.92346 0.88055 0.87625 0.90826 0.90097 0.74086 0.84497 0.84441 0.94916 0.91083 0.94127 0.94039 0.91157 0.94840 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 10.19 71.98 0.73 -0.78 16 2 C -0.15 -2.19 6.13 -10.79 -0.07 -2.26 16 3 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 4 C -0.17 -2.30 9.82 30.59 0.30 -2.00 16 5 C -0.17 -2.85 5.55 -10.79 -0.06 -2.91 16 6 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 7 C 0.14 2.91 6.41 86.38 0.55 3.47 16 8 N -1.11 -28.01 5.88 -187.50 -1.10 -29.11 16 9 S 2.61 93.59 4.49 -56.49 -0.25 93.34 16 10 O -0.99 -41.06 15.70 -127.65 -2.00 -43.07 16 11 O -0.99 -41.08 15.12 -127.65 -1.93 -43.01 16 12 C -0.59 -21.75 5.01 71.98 0.36 -21.39 16 13 C 0.07 3.24 0.52 -52.93 -0.03 3.21 16 14 C -0.16 -7.98 7.77 71.98 0.56 -7.42 16 15 C -0.16 -7.89 7.78 71.98 0.56 -7.33 16 16 C -0.52 -26.70 8.01 25.60 0.21 -26.50 16 17 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 18 C 0.02 0.87 5.15 84.65 0.44 1.31 16 19 N -0.91 -50.36 9.35 21.45 0.20 -50.16 16 20 Si 0.96 41.99 29.54 68.60 2.03 44.02 16 21 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H 0.06 0.68 7.90 -2.38 -0.02 0.66 16 25 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.10 1.33 8.03 -2.39 -0.02 1.31 16 28 H 0.11 1.23 8.05 -2.39 -0.02 1.21 16 29 H 0.07 1.73 7.69 -2.39 -0.02 1.71 16 30 H 0.08 1.48 7.87 -2.39 -0.02 1.46 16 31 H 0.42 8.89 8.62 -96.74 -0.83 8.06 16 32 H 0.14 4.46 8.14 -2.39 -0.02 4.44 16 33 H 0.14 4.55 8.14 -2.39 -0.02 4.53 16 34 H 0.03 1.55 5.46 -2.38 -0.01 1.54 16 35 H 0.07 3.87 6.07 -2.39 -0.01 3.85 16 36 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.07 3.82 6.07 -2.38 -0.01 3.80 16 39 H 0.03 1.58 5.46 -2.39 -0.01 1.57 16 40 H 0.26 13.82 8.31 -92.70 -0.77 13.05 16 Total: -1.00 -66.16 326.17 0.68 -65.48 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.19 Total: 25.11 kcal Atomic # 6 Polarization: -66.16 SS G_CDS: 3.56 Total: -62.60 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -0.90 Total: -79.27 kcal Atomic # 8 Polarization: -82.14 SS G_CDS: -3.93 Total: -86.07 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 16 Polarization: 93.59 SS G_CDS: -0.25 Total: 93.34 kcal Total: -66.16 0.68 -65.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331807253.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.120 kcal (2) G-P(sol) polarization free energy of solvation -66.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds