Wall clock time and date at job start Mon Mar 30 2020 02:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 115.55493 * 2 1 4 4 C 1.53006 * 117.51468 * 214.29734 * 2 1 3 5 5 C 1.52999 * 60.00089 * 252.52084 * 4 2 1 6 6 H 1.09002 * 117.49803 * 107.49109 * 5 4 2 7 7 C 1.53005 * 117.51737 * 252.51928 * 5 4 2 8 8 N 1.46500 * 109.47087 * 243.71508 * 7 5 4 9 9 S 1.65601 * 119.99837 * 164.99745 * 8 7 5 10 10 O 1.42097 * 104.27827 * 181.07406 * 9 8 7 11 11 O 1.42095 * 104.27825 * 308.93273 * 9 8 7 12 12 C 1.81401 * 104.44465 * 65.00389 * 9 8 7 13 13 C 1.53004 * 109.46840 * 179.97438 * 12 9 8 14 14 C 1.53001 * 109.47265 * 300.00262 * 13 12 9 15 15 C 1.53007 * 109.46973 * 60.00238 * 13 12 9 16 16 C 1.50702 * 109.47063 * 180.02562 * 13 12 9 17 17 H 1.08003 * 120.00049 * 359.97438 * 16 13 12 18 18 C 1.37880 * 120.00111 * 180.02562 * 16 13 12 19 19 N 1.31517 * 119.99535 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 120.00027 * 180.02562 * 18 16 13 21 21 H 1.48494 * 109.47115 * 89.99649 * 20 18 16 22 22 H 1.48499 * 109.46998 * 209.99439 * 20 18 16 23 23 H 1.48498 * 109.46947 * 329.99485 * 20 18 16 24 24 H 1.09005 * 109.46722 * 274.32985 * 1 2 3 25 25 H 1.08994 * 109.46708 * 34.32568 * 1 2 3 26 26 H 1.08999 * 109.46998 * 154.33136 * 1 2 3 27 27 H 1.09003 * 117.49619 * 145.02781 * 4 2 1 28 28 H 1.08995 * 117.50015 * 0.02562 * 4 2 1 29 29 H 1.08998 * 109.46915 * 3.72051 * 7 5 4 30 30 H 1.09001 * 109.46560 * 123.71648 * 7 5 4 31 31 H 0.96996 * 119.99735 * 345.00891 * 8 7 5 32 32 H 1.09000 * 109.47237 * 299.99457 * 12 9 8 33 33 H 1.09004 * 109.47293 * 59.99996 * 12 9 8 34 34 H 1.08989 * 109.46783 * 59.99924 * 14 13 12 35 35 H 1.08997 * 109.46480 * 179.97438 * 14 13 12 36 36 H 1.08996 * 109.46794 * 299.99553 * 14 13 12 37 37 H 1.09000 * 109.46901 * 59.99485 * 15 13 12 38 38 H 1.09002 * 109.47088 * 179.97438 * 15 13 12 39 39 H 1.09002 * 109.47058 * 299.99649 * 15 13 12 40 40 H 0.97006 * 119.99472 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2369 -1.1211 -0.7647 5 6 2.2364 -1.1208 0.7653 6 1 1.6112 -1.8584 1.2685 7 6 3.5485 -0.7753 1.4726 8 7 4.0090 -1.9345 2.2409 9 16 5.5660 -1.9902 2.8023 10 8 5.6554 -3.2448 3.4636 11 8 6.3610 -1.7063 1.6594 12 6 5.6642 -0.6311 3.9997 13 6 7.0720 -0.5779 4.5965 14 6 7.3777 -1.9013 5.3009 15 6 8.0913 -0.3477 3.4789 16 6 7.1535 0.5508 5.5917 17 1 6.2878 1.1688 5.7794 18 6 8.3334 0.7954 6.2618 19 7 9.3876 0.0432 6.0328 20 14 8.4341 2.1940 7.4959 21 1 8.0618 1.6930 8.8433 22 1 9.8207 2.7245 7.5307 23 1 7.4999 3.2764 7.0946 24 1 -0.3633 0.0776 1.0248 25 1 -0.3632 0.8487 -0.5795 26 1 -0.3633 -0.9262 -0.4451 27 1 3.1721 -0.8751 -1.2677 28 1 1.6119 -1.8585 -1.2682 29 1 4.3015 -0.5083 0.7311 30 1 3.3874 0.0664 2.1462 31 1 3.4020 -2.6694 2.4207 32 1 5.4461 0.3117 3.4979 33 1 4.9383 -0.7953 4.7961 34 1 7.3186 -2.7178 4.5814 35 1 8.3808 -1.8634 5.7256 36 1 6.6516 -2.0652 6.0971 37 1 7.8735 0.5951 2.9770 38 1 9.0943 -0.3094 3.9041 39 1 8.0323 -1.1644 2.7594 40 1 10.2177 0.2150 6.5045 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331807256.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:07 Heat of formation + Delta-G solvation = -62.107718 kcal Electronic energy + Delta-G solvation = -20187.741328 eV Core-core repulsion = 17130.185223 eV Total energy + Delta-G solvation = -3057.556105 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.43810 -36.50249 -36.26087 -35.29136 -34.40079 -31.65927 -29.04579 -26.63042 -25.86779 -25.70396 -25.20821 -21.44708 -20.75018 -19.51210 -18.65870 -17.23484 -16.44859 -15.90808 -15.41669 -15.00713 -14.78320 -14.48796 -14.35667 -13.56573 -13.37068 -13.06749 -12.98432 -12.54242 -12.49539 -12.07147 -11.89950 -11.64260 -11.46195 -11.35907 -11.09479 -11.06410 -10.92611 -10.69284 -10.42461 -10.34089 -10.26383 -10.08441 -10.02928 -9.64450 -9.55453 -9.18181 -8.66027 -8.39735 -6.03058 -4.15032 0.88973 3.19916 3.25936 3.33213 3.35154 3.56657 4.27959 4.36904 4.44516 4.62838 4.69763 4.83869 5.04386 5.08673 5.22288 5.29410 5.50210 5.53713 5.60803 5.65323 5.70272 5.71763 5.79129 5.94340 6.04712 6.15369 6.39018 6.71334 6.80787 6.91997 7.03723 7.16891 7.32545 7.51432 7.68236 7.98960 8.10314 8.33599 8.83421 9.50336 10.98248 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.025228 B = 0.004673 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.618961 B = 5990.277496 C = 6637.261738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.151 4.151 3 H 0.108 0.892 4 C -0.174 4.174 5 C -0.156 4.156 6 H 0.110 0.890 7 C 0.145 3.855 8 N -1.129 6.129 9 S 2.595 3.405 10 O -0.966 6.966 11 O -0.965 6.965 12 C -0.582 4.582 13 C 0.081 3.919 14 C -0.164 4.164 15 C -0.163 4.163 16 C -0.502 4.502 17 H 0.058 0.942 18 C 0.064 3.936 19 N -0.884 5.884 20 Si 0.896 3.104 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.275 1.275 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.411 0.589 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.028 0.972 35 H 0.095 0.905 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.095 0.905 39 H 0.028 0.972 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.544 -0.631 -9.541 17.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.170 4.170 3 H 0.126 0.874 4 C -0.211 4.211 5 C -0.175 4.175 6 H 0.128 0.872 7 C 0.019 3.981 8 N -0.886 5.886 9 S 2.693 3.307 10 O -0.956 6.956 11 O -0.955 6.955 12 C -0.716 4.716 13 C 0.079 3.921 14 C -0.221 4.221 15 C -0.221 4.221 16 C -0.541 4.541 17 H 0.077 0.923 18 C -0.138 4.138 19 N -0.522 5.522 20 Si 0.724 3.276 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.200 1.200 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.112 0.888 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.244 0.756 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.046 0.954 35 H 0.113 0.887 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.113 0.887 39 H 0.047 0.953 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.576 -1.141 -9.842 16.807 hybrid contribution -0.566 1.008 1.132 1.618 sum -14.142 -0.132 -8.710 16.609 Atomic orbital electron populations 1.21366 0.92752 1.01893 1.01954 1.22423 0.95309 0.94827 1.04420 0.87427 1.23277 1.02821 1.01193 0.93829 1.22555 0.98299 1.02400 0.94292 0.87209 1.20837 0.94922 0.87611 0.94741 1.55822 1.33605 1.29082 1.70068 1.05558 0.72043 0.77071 0.76063 1.93550 1.84643 1.40542 1.76855 1.93533 1.66738 1.86377 1.48840 1.30526 1.10065 1.16367 1.14627 1.17938 0.84215 0.96146 0.93802 1.22271 1.05004 0.94944 0.99909 1.22271 1.04588 0.98758 0.96489 1.20946 0.97275 1.13786 1.22117 0.92331 1.24942 0.95636 0.96394 0.96787 1.69808 1.01840 1.38565 1.41951 0.86532 0.77333 0.82248 0.81497 1.20657 1.21136 1.19974 0.92095 0.92100 0.92614 0.88333 0.88755 0.90146 0.91408 0.75600 0.86526 0.86271 0.95353 0.88658 0.94484 0.94513 0.88673 0.95290 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.19 37.16 0.38 -0.48 16 2 C -0.15 -1.27 6.13 -90.61 -0.56 -1.83 16 3 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.17 -1.57 9.82 -26.73 -0.26 -1.83 16 5 C -0.16 -1.51 5.62 -90.61 -0.51 -2.02 16 6 H 0.11 0.97 7.98 -51.93 -0.41 0.56 16 7 C 0.15 1.72 6.41 -4.04 -0.03 1.69 16 8 N -1.13 -15.35 5.89 -10.61 -0.06 -15.41 16 9 S 2.59 48.00 4.49 -107.50 -0.48 47.52 16 10 O -0.97 -20.35 15.70 -57.54 -0.90 -21.26 16 11 O -0.96 -20.31 15.12 -57.54 -0.87 -21.18 16 12 C -0.58 -11.31 5.01 37.16 0.19 -11.12 16 13 C 0.08 1.97 0.52 -155.65 -0.08 1.89 16 14 C -0.16 -4.05 7.77 37.16 0.29 -3.76 16 15 C -0.16 -4.03 7.78 37.16 0.29 -3.74 16 16 C -0.50 -13.18 8.01 -34.44 -0.28 -13.46 16 17 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 18 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 19 N -0.88 -24.17 9.35 55.43 0.52 -23.65 16 20 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.37 7.90 -51.93 -0.41 -0.04 16 27 H 0.10 0.91 8.03 -51.93 -0.42 0.50 16 28 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 29 H 0.08 1.01 7.43 -51.93 -0.39 0.62 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.41 4.75 8.51 -34.47 -0.29 4.46 16 32 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 33 H 0.12 2.11 8.14 -51.92 -0.42 1.68 16 34 H 0.03 0.67 5.46 -51.93 -0.28 0.38 16 35 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 39 H 0.03 0.68 5.47 -51.93 -0.28 0.39 16 40 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 325.97 15.07 4.91 4.91 Total: -1.00 -31.39 325.97 -9.03 -40.42 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.46 Total: 6.07 kcal Atomic # 6 Polarization: -32.38 SS G_CDS: -0.66 Total: -33.03 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.46 Total: -39.06 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -1.77 Total: -42.44 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 48.00 SS G_CDS: -0.48 Total: 47.52 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.39 -9.03 -40.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331807256.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.689 kcal (2) G-P(sol) polarization free energy of solvation -31.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds