Wall clock time and date at job start Mon Mar 30 2020 02:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.86428 * 2 1 4 4 C 1.54099 * 109.87837 * 121.00874 * 2 1 3 5 5 C 1.54806 * 104.18808 * 121.45526 * 4 2 1 6 6 C 1.54992 * 102.09350 * 20.87944 * 5 4 2 7 7 H 1.09000 * 110.62040 * 81.47658 * 6 5 4 8 8 C 1.50696 * 110.61874 * 204.31950 * 6 5 4 9 9 O 1.21283 * 120.00341 * 114.99821 * 8 6 5 10 10 N 1.34781 * 119.99933 * 294.99912 * 8 6 5 11 11 C 1.39125 * 120.00135 * 175.81626 * 10 8 6 12 12 C 1.38643 * 120.28834 * 34.53651 * 11 10 8 13 13 C 1.38222 * 120.03599 * 180.02562 * 12 11 10 14 14 C 1.38864 * 120.61746 * 359.97082 * 13 12 11 15 15 C 1.36468 * 120.57293 * 0.02936 * 14 13 12 16 16 C 1.40732 * 119.94371 * 359.69553 * 15 14 13 17 17 C 1.41073 * 120.29790 * 180.29596 * 16 15 14 18 18 H 1.08001 * 120.00021 * 214.96199 * 17 16 15 19 19 C 1.39955 * 120.00133 * 34.96558 * 17 16 15 20 20 N 1.30852 * 119.99868 * 355.65616 * 19 17 16 21 21 Si 1.86802 * 120.00093 * 175.66241 * 19 17 16 22 22 H 1.48502 * 109.47302 * 59.99451 * 21 19 17 23 23 H 1.48502 * 109.47143 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46737 * 299.99773 * 21 19 17 25 25 O 1.43744 * 109.87670 * 238.83646 * 2 1 3 26 26 H 1.09002 * 109.46981 * 298.98921 * 1 2 3 27 27 H 1.09001 * 109.46896 * 178.99361 * 1 2 3 28 28 H 1.08999 * 109.47272 * 58.99723 * 1 2 3 29 29 H 1.09002 * 110.48331 * 240.13194 * 4 2 1 30 30 H 1.09003 * 110.48867 * 2.63920 * 4 2 1 31 31 H 1.09005 * 110.90521 * 139.07903 * 5 4 2 32 32 H 1.09001 * 110.90799 * 262.64118 * 5 4 2 33 33 H 0.97001 * 120.00106 * 355.80669 * 10 8 6 34 34 H 1.08001 * 119.97934 * 0.02562 * 12 11 10 35 35 H 1.08008 * 119.69070 * 179.97438 * 13 12 11 36 36 H 1.07994 * 119.71155 * 180.02562 * 14 13 12 37 37 H 1.07999 * 120.02275 * 179.97438 * 15 14 13 38 38 H 0.96998 * 119.99630 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0540 -0.7466 1.2421 5 6 2.9196 -1.8905 0.6601 6 6 3.2380 -1.3651 -0.7629 7 1 4.0685 -0.6598 -0.7347 8 6 3.5466 -2.5090 -1.6942 9 8 2.8122 -2.7439 -2.6303 10 7 4.6388 -3.2710 -1.4867 11 6 4.8773 -4.3792 -2.2932 12 6 4.5248 -4.3572 -3.6339 13 6 4.7636 -5.4614 -4.4303 14 6 5.3566 -6.6001 -3.9011 15 6 5.7136 -6.6490 -2.5849 16 6 5.4868 -5.5362 -1.7537 17 6 5.8586 -5.5764 -0.3935 18 1 5.2561 -5.0701 0.3462 19 6 7.0082 -6.2722 -0.0024 20 7 7.6910 -6.9559 -0.8848 21 14 7.5679 -6.2250 1.7791 22 1 6.4995 -6.7800 2.6485 23 1 8.8017 -7.0372 1.9321 24 1 7.8471 -4.8207 2.1732 25 8 2.0188 -0.6995 -1.1567 26 1 -0.3633 0.4981 0.8989 27 1 -0.3633 -1.0275 -0.0181 28 1 -0.3634 0.5293 -0.8808 29 1 2.6620 -0.0834 1.8575 30 1 1.2246 -1.1504 1.8226 31 1 3.8332 -2.0207 1.2402 32 1 2.3543 -2.8213 0.6143 33 1 5.2588 -3.0466 -0.7752 34 1 4.0634 -3.4768 -4.0562 35 1 4.4864 -5.4384 -5.4739 36 1 5.5368 -7.4544 -4.5368 37 1 6.1739 -7.5393 -2.1825 38 1 8.4879 -7.4378 -0.6139 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334453532.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:10 Heat of formation + Delta-G solvation = -83.341830 kcal Electronic energy + Delta-G solvation = -21175.831682 eV Core-core repulsion = 17981.910845 eV Total energy + Delta-G solvation = -3193.920836 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.56119 -40.14968 -38.73155 -35.53709 -35.46859 -33.32077 -32.74613 -31.47524 -30.29588 -27.73386 -26.84802 -24.10907 -23.17107 -22.43674 -21.90461 -21.00963 -19.26587 -18.51672 -18.01670 -17.46220 -16.95841 -16.49283 -16.14728 -15.90841 -15.74523 -14.93691 -14.51661 -14.46833 -14.24212 -14.18260 -13.61470 -13.55334 -13.21280 -13.05149 -12.85110 -12.79256 -12.68747 -12.55091 -12.12901 -11.93128 -11.83210 -11.60997 -11.60099 -11.06060 -10.96971 -10.79049 -10.42237 -9.24386 -8.81398 -8.44151 -6.35539 0.81412 1.06298 1.44886 1.55045 1.56633 1.72401 2.04133 2.25747 2.82416 3.05645 3.49528 3.65317 3.73095 3.91970 3.99558 4.13942 4.24326 4.46473 4.49749 4.59173 4.61539 4.74981 4.77594 4.90555 4.97364 5.06321 5.11274 5.16557 5.20865 5.30026 5.34923 5.43393 5.77775 5.85451 5.90571 6.15182 6.18047 6.26619 6.65304 6.74033 6.96712 7.01272 7.36266 8.43939 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.017044 B = 0.005805 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.408420 B = 4821.978116 C = 6276.763137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 H 0.090 0.910 4 C -0.139 4.139 5 C -0.143 4.143 6 C 0.068 3.932 7 H 0.124 0.876 8 C 0.499 3.501 9 O -0.569 6.569 10 N -0.628 5.628 11 C 0.016 3.984 12 C -0.110 4.110 13 C -0.221 4.221 14 C -0.123 4.123 15 C -0.163 4.163 16 C 0.071 3.929 17 C -0.488 4.488 18 H 0.084 0.916 19 C 0.033 3.967 20 N -0.838 5.838 21 Si 0.986 3.014 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.251 1.251 25 O -0.382 6.382 26 H 0.098 0.902 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.059 0.941 33 H 0.415 0.585 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.695 11.401 9.190 15.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.000 4.000 3 H 0.107 0.893 4 C -0.177 4.177 5 C -0.181 4.181 6 C 0.007 3.993 7 H 0.142 0.858 8 C 0.287 3.713 9 O -0.448 6.448 10 N -0.272 5.272 11 C -0.078 4.078 12 C -0.131 4.131 13 C -0.240 4.240 14 C -0.141 4.141 15 C -0.184 4.184 16 C 0.067 3.933 17 C -0.519 4.519 18 H 0.102 0.898 19 C -0.181 4.181 20 N -0.465 5.465 21 Si 0.808 3.192 22 H -0.188 1.188 23 H -0.202 1.202 24 H -0.175 1.175 25 O -0.302 6.302 26 H 0.117 0.883 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.127 0.873 30 H 0.109 0.891 31 H 0.132 0.868 32 H 0.078 0.922 33 H 0.253 0.747 34 H 0.122 0.878 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.139 11.130 8.337 14.825 hybrid contribution 0.670 -0.367 0.497 0.911 sum -4.469 10.763 8.834 14.624 Atomic orbital electron populations 1.21964 0.93153 1.02247 1.03335 1.23138 0.95977 0.96407 0.84505 0.89266 1.23032 1.00539 0.96651 0.97441 1.23132 1.02618 0.99410 0.92911 1.22994 0.90867 0.92374 0.93067 0.85843 1.21059 0.80161 0.84190 0.85901 1.90637 1.50156 1.71269 1.32704 1.42709 1.24115 1.25705 1.34694 1.17980 1.11527 0.88365 0.89951 1.20832 1.00851 0.98738 0.92646 1.20672 1.08896 0.95169 0.99300 1.20783 0.99731 0.97802 0.95829 1.21219 1.04238 0.99063 0.93847 1.17792 0.91901 0.88781 0.94808 1.19498 1.08841 1.30829 0.92715 0.89841 1.26757 0.95696 0.91982 1.03622 1.69848 1.15258 1.24130 1.37279 0.85172 0.77867 0.79857 0.76353 1.18781 1.20191 1.17485 1.89001 1.38944 1.67352 1.34887 0.88300 0.93437 0.92630 0.87333 0.89057 0.86797 0.92186 0.74747 0.87784 0.86807 0.86899 0.86455 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.36 71.98 0.67 -2.12 16 2 C 0.06 1.17 4.06 30.97 0.13 1.29 16 3 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 4 C -0.14 -2.27 6.64 31.58 0.21 -2.06 16 5 C -0.14 -3.24 6.56 31.89 0.21 -3.03 16 6 C 0.07 1.95 3.76 30.53 0.11 2.07 16 7 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 8 C 0.50 20.03 7.05 87.65 0.62 20.65 16 9 O -0.57 -28.22 13.99 15.11 0.21 -28.01 16 10 N -0.63 -25.73 4.95 -302.28 -1.50 -27.22 16 11 C 0.02 0.80 6.34 38.88 0.25 1.05 16 12 C -0.11 -5.56 8.69 22.36 0.19 -5.36 16 13 C -0.22 -10.53 10.04 22.42 0.22 -10.31 16 14 C -0.12 -5.92 9.97 22.01 0.22 -5.71 16 15 C -0.16 -8.63 8.61 22.47 0.19 -8.43 16 16 C 0.07 3.72 5.56 -21.18 -0.12 3.60 16 17 C -0.49 -24.09 8.22 23.38 0.19 -23.90 16 18 H 0.08 3.82 7.63 -2.91 -0.02 3.79 16 19 C 0.03 1.53 5.42 85.25 0.46 1.99 16 20 N -0.84 -41.94 10.62 21.83 0.23 -41.70 16 21 Si 0.99 35.19 29.56 68.60 2.03 37.22 16 22 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 23 H -0.28 -9.72 7.11 99.48 0.71 -9.02 16 24 H -0.25 -8.30 7.11 99.48 0.71 -7.59 16 25 O -0.38 -12.15 10.48 -130.83 -1.37 -13.52 16 26 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.09 1.33 7.70 -2.39 -0.02 1.31 16 31 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.06 1.66 8.05 -2.39 -0.02 1.64 16 33 H 0.42 14.58 8.10 -92.71 -0.75 13.83 16 34 H 0.10 5.29 6.20 -2.91 -0.02 5.28 16 35 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 36 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 37 H 0.12 6.41 6.16 -2.91 -0.02 6.39 16 38 H 0.28 13.05 8.30 -92.71 -0.77 12.28 16 Total: -1.00 -67.51 316.42 3.49 -64.02 By element: Atomic # 1 Polarization: 39.16 SS G_CDS: 0.32 Total: 39.48 kcal Atomic # 6 Polarization: -33.83 SS G_CDS: 3.57 Total: -30.27 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -1.26 Total: -68.92 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -1.16 Total: -41.53 kcal Atomic # 14 Polarization: 35.19 SS G_CDS: 2.03 Total: 37.22 kcal Total: -67.51 3.49 -64.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334453532.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.320 kcal (2) G-P(sol) polarization free energy of solvation -67.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds