Wall clock time and date at job start Mon Mar 30 2020 02:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.27452 * 2 1 4 4 C 1.54944 * 110.30976 * 122.09311 * 2 1 3 5 5 C 1.55306 * 100.98138 * 155.33792 * 4 2 1 6 6 C 1.54436 * 102.22651 * 325.91754 * 5 4 2 7 7 H 1.08996 * 109.79063 * 261.79516 * 6 5 4 8 8 C 1.50697 * 109.92478 * 140.87739 * 6 5 4 9 9 O 1.21289 * 120.00072 * 245.33086 * 8 6 5 10 10 N 1.34775 * 120.00217 * 65.33335 * 8 6 5 11 11 C 1.39129 * 120.00047 * 175.27007 * 10 8 6 12 12 C 1.38643 * 120.28961 * 34.21259 * 11 10 8 13 13 C 1.38214 * 120.03714 * 179.97438 * 12 11 10 14 14 C 1.38863 * 120.61637 * 0.02562 * 13 12 11 15 15 C 1.36463 * 120.57677 * 0.02562 * 14 13 12 16 16 C 1.40737 * 119.94338 * 359.65503 * 15 14 13 17 17 C 1.41068 * 120.29973 * 180.34367 * 16 15 14 18 18 H 1.08002 * 119.99875 * 148.81513 * 17 16 15 19 19 C 1.39957 * 120.00424 * 328.80353 * 17 16 15 20 20 N 1.30849 * 120.00286 * 167.54998 * 19 17 16 21 21 Si 1.86801 * 119.99819 * 347.55464 * 19 17 16 22 22 H 1.48501 * 109.47225 * 92.49748 * 21 19 17 23 23 H 1.48497 * 109.47351 * 212.49876 * 21 19 17 24 24 H 1.48503 * 109.47342 * 332.50148 * 21 19 17 25 25 O 1.43233 * 107.60745 * 21.30029 * 6 5 4 26 26 H 1.09005 * 109.47122 * 297.91230 * 1 2 3 27 27 H 1.09003 * 109.47296 * 57.90854 * 1 2 3 28 28 H 1.08995 * 109.47023 * 177.91070 * 1 2 3 29 29 H 1.09003 * 111.12415 * 273.27560 * 4 2 1 30 30 H 1.09000 * 111.12773 * 37.39606 * 4 2 1 31 31 H 1.09001 * 110.84456 * 84.07718 * 5 4 2 32 32 H 1.08998 * 110.85011 * 207.69521 * 5 4 2 33 33 H 0.96999 * 120.00197 * 355.26391 * 10 8 6 34 34 H 1.08007 * 119.97673 * 0.02562 * 12 11 10 35 35 H 1.08002 * 119.69155 * 180.02562 * 13 12 11 36 36 H 1.08004 * 119.71150 * 180.02562 * 14 13 12 37 37 H 1.07998 * 120.03073 * 179.97438 * 15 14 13 38 38 H 0.96998 * 120.00163 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7720 1.2311 5 6 3.4699 -1.2029 0.7207 6 6 3.2112 -1.4427 -0.7829 7 1 3.0623 -2.5067 -0.9666 8 6 4.3807 -0.9432 -1.5913 9 8 4.2377 -0.0088 -2.3513 10 7 5.5857 -1.5346 -1.4698 11 6 6.6403 -1.1390 -2.2865 12 6 6.7619 0.1850 -2.6794 13 6 7.8119 0.5723 -3.4904 14 6 8.7528 -0.3542 -3.9200 15 6 8.6568 -1.6640 -3.5493 16 6 7.6010 -2.0833 -2.7185 17 6 7.4986 -3.4341 -2.3248 18 1 7.0685 -3.6861 -1.3667 19 6 7.9541 -4.4476 -3.1757 20 7 8.0875 -5.6690 -2.7256 21 14 8.3716 -4.0566 -4.9540 22 1 9.8162 -3.7305 -5.0631 23 1 8.0643 -5.2341 -5.8050 24 1 7.5662 -2.8944 -5.4076 25 8 2.0286 -0.7178 -1.1400 26 1 -0.3634 0.4811 0.9082 27 1 -0.3634 0.5460 -0.8707 28 1 -0.3633 -1.0269 -0.0375 29 1 2.1496 -0.1185 2.0996 30 1 1.4466 -1.6399 1.4527 31 1 4.1978 -0.4047 0.8663 32 1 3.7958 -2.1206 1.2102 33 1 5.7177 -2.2360 -0.8129 34 1 6.0361 0.9142 -2.3509 35 1 7.9015 1.6053 -3.7928 36 1 9.5677 -0.0354 -4.5531 37 1 9.3932 -2.3772 -3.8889 38 1 8.4036 -6.3713 -3.3153 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334453533.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:13 Heat of formation + Delta-G solvation = -64.436312 kcal Electronic energy + Delta-G solvation = -21217.098951 eV Core-core repulsion = 18023.997920 eV Total energy + Delta-G solvation = -3193.101031 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.29330 -38.81616 -37.16467 -33.94709 -33.62234 -32.35234 -31.80110 -30.45280 -28.83249 -26.57221 -25.00020 -22.76110 -21.95727 -21.35908 -20.49892 -19.47376 -17.50515 -17.38592 -17.02502 -15.94681 -15.86771 -15.21648 -14.43554 -14.32609 -14.03054 -13.85787 -13.41633 -13.24253 -13.14298 -12.61287 -12.48875 -12.15541 -12.12054 -11.93472 -11.70442 -11.55031 -11.10671 -11.03911 -10.94752 -10.88673 -10.44578 -10.02511 -9.94437 -9.82642 -9.38025 -9.18517 -8.69349 -7.64792 -7.14438 -6.97905 -4.51634 2.40678 2.65133 3.07680 3.12381 3.22751 3.32575 3.55081 3.96281 4.00528 4.35915 4.52150 4.60846 4.87591 5.01591 5.08914 5.22258 5.30361 5.44405 5.49022 5.52910 5.57814 5.74182 5.85228 5.98278 6.06505 6.07157 6.14334 6.34365 6.62071 6.72623 6.96238 6.98182 7.15291 7.37422 7.48199 7.70116 7.80414 7.95640 8.23061 8.25567 8.56665 8.70724 8.90585 10.04174 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.023027 B = 0.005169 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.665263 B = 5415.703407 C = 6102.294840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.071 3.929 3 H 0.071 0.929 4 C -0.149 4.149 5 C -0.148 4.148 6 C 0.068 3.932 7 H 0.107 0.893 8 C 0.489 3.511 9 O -0.523 6.523 10 N -0.637 5.637 11 C 0.032 3.968 12 C -0.078 4.078 13 C -0.226 4.226 14 C -0.087 4.087 15 C -0.226 4.226 16 C 0.085 3.915 17 C -0.450 4.450 18 H 0.088 0.912 19 C 0.085 3.915 20 N -0.814 5.814 21 Si 0.912 3.088 22 H -0.270 1.270 23 H -0.293 1.293 24 H -0.243 1.243 25 O -0.348 6.348 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.404 0.596 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.872 5.184 7.442 12.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.014 3.986 3 H 0.089 0.911 4 C -0.187 4.187 5 C -0.186 4.186 6 C 0.006 3.994 7 H 0.124 0.876 8 C 0.275 3.725 9 O -0.399 6.399 10 N -0.281 5.281 11 C -0.061 4.061 12 C -0.098 4.098 13 C -0.246 4.246 14 C -0.106 4.106 15 C -0.246 4.246 16 C 0.080 3.920 17 C -0.479 4.479 18 H 0.106 0.894 19 C -0.133 4.133 20 N -0.439 5.439 21 Si 0.740 3.260 22 H -0.197 1.197 23 H -0.221 1.221 24 H -0.166 1.166 25 O -0.266 6.266 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.239 0.761 34 H 0.133 0.867 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.121 0.879 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.093 5.544 6.717 12.591 hybrid contribution 0.535 -0.489 -0.328 0.796 sum -8.558 5.055 6.389 11.816 Atomic orbital electron populations 1.21861 0.93587 1.02837 1.02309 1.23027 0.94864 0.95950 0.84770 0.91103 1.23325 0.95850 1.01003 0.98524 1.23138 0.98427 1.03655 0.93336 1.22605 0.85507 0.97408 0.93838 0.87558 1.20864 0.83764 0.84129 0.83768 1.90650 1.83726 1.27702 1.37867 1.42827 1.08777 1.39199 1.37340 1.17591 0.91132 0.93194 1.04226 1.20804 0.96953 0.93971 0.98095 1.20335 0.98963 0.98103 1.07202 1.20380 0.97709 0.93737 0.98763 1.20637 1.00413 0.95562 1.07975 1.17554 0.90375 0.92893 0.91136 1.19174 1.35476 0.88780 1.04482 0.89399 1.26055 0.91351 0.94429 1.01438 1.69642 1.34006 1.02205 1.38022 0.86310 0.79869 0.78533 0.81312 1.19675 1.22081 1.16637 1.88532 1.39558 1.64561 1.33944 0.91304 0.91799 0.91864 0.89730 0.89973 0.89879 0.88833 0.76054 0.86679 0.88534 0.88773 0.87874 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.62 37.16 0.36 -1.05 16 2 C 0.07 0.85 4.08 -25.71 -0.10 0.75 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.15 -1.40 6.57 -24.48 -0.16 -1.56 16 5 C -0.15 -1.65 6.53 -24.76 -0.16 -1.81 16 6 C 0.07 1.02 3.94 -27.13 -0.11 0.91 16 7 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 8 C 0.49 9.56 6.88 -10.99 -0.08 9.48 16 9 O -0.52 -12.23 13.90 -14.10 -0.20 -12.43 16 10 N -0.64 -12.77 5.01 -9.47 -0.05 -12.81 16 11 C 0.03 0.76 6.35 -83.17 -0.53 0.23 16 12 C -0.08 -1.80 8.69 -39.44 -0.34 -2.15 16 13 C -0.23 -4.98 10.04 -39.36 -0.40 -5.37 16 14 C -0.09 -1.93 9.97 -39.99 -0.40 -2.33 16 15 C -0.23 -5.44 6.95 -39.28 -0.27 -5.72 16 16 C 0.08 2.10 5.14 -106.65 -0.55 1.56 16 17 C -0.45 -11.50 9.13 -37.87 -0.35 -11.85 16 18 H 0.09 2.23 7.08 -52.49 -0.37 1.86 16 19 C 0.09 2.18 5.47 -17.33 -0.09 2.09 16 20 N -0.81 -21.01 13.93 55.55 0.77 -20.23 16 21 Si 0.91 20.92 24.41 -169.99 -4.15 16.77 16 22 H -0.27 -5.98 6.66 56.52 0.38 -5.60 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.24 -5.87 6.69 56.52 0.38 -5.50 16 25 O -0.35 -5.62 10.25 -54.88 -0.56 -6.18 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.68 8.06 -51.93 -0.42 0.26 16 31 H 0.08 0.98 7.85 -51.93 -0.41 0.57 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.40 7.15 7.58 -40.82 -0.31 6.85 16 34 H 0.12 2.65 6.15 -52.48 -0.32 2.33 16 35 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 36 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 37 H 0.10 2.45 4.41 -52.49 -0.23 2.22 16 38 H 0.29 6.75 8.30 -40.82 -0.34 6.42 16 LS Contribution 309.83 15.07 4.67 4.67 Total: -1.00 -30.61 309.83 -7.74 -38.35 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -5.05 Total: 8.68 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -3.18 Total: -16.83 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.73 Total: -33.05 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.76 Total: -18.61 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.15 Total: 16.77 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.61 -7.74 -38.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334453533.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.081 kcal (2) G-P(sol) polarization free energy of solvation -30.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds