Wall clock time and date at job start Mon Mar 30 2020 02:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.27452 * 2 1 4 4 C 1.54944 * 110.30976 * 122.09311 * 2 1 3 5 5 C 1.55306 * 100.98138 * 155.33792 * 4 2 1 6 6 C 1.54436 * 102.22651 * 325.91754 * 5 4 2 7 7 H 1.08996 * 109.79063 * 261.79516 * 6 5 4 8 8 C 1.50697 * 109.92478 * 140.87739 * 6 5 4 9 9 O 1.21289 * 120.00072 * 245.33086 * 8 6 5 10 10 N 1.34775 * 120.00217 * 65.33335 * 8 6 5 11 11 C 1.39129 * 120.00047 * 175.27007 * 10 8 6 12 12 C 1.38643 * 120.28961 * 34.21259 * 11 10 8 13 13 C 1.38214 * 120.03714 * 179.97438 * 12 11 10 14 14 C 1.38863 * 120.61637 * 0.02562 * 13 12 11 15 15 C 1.36463 * 120.57677 * 0.02562 * 14 13 12 16 16 C 1.40737 * 119.94338 * 359.65503 * 15 14 13 17 17 C 1.41068 * 120.29973 * 180.34367 * 16 15 14 18 18 H 1.08002 * 119.99875 * 148.81513 * 17 16 15 19 19 C 1.39957 * 120.00424 * 328.80353 * 17 16 15 20 20 N 1.30849 * 120.00286 * 167.54998 * 19 17 16 21 21 Si 1.86801 * 119.99819 * 347.55464 * 19 17 16 22 22 H 1.48501 * 109.47225 * 92.49748 * 21 19 17 23 23 H 1.48497 * 109.47351 * 212.49876 * 21 19 17 24 24 H 1.48503 * 109.47342 * 332.50148 * 21 19 17 25 25 O 1.43233 * 107.60745 * 21.30029 * 6 5 4 26 26 H 1.09005 * 109.47122 * 297.91230 * 1 2 3 27 27 H 1.09003 * 109.47296 * 57.90854 * 1 2 3 28 28 H 1.08995 * 109.47023 * 177.91070 * 1 2 3 29 29 H 1.09003 * 111.12415 * 273.27560 * 4 2 1 30 30 H 1.09000 * 111.12773 * 37.39606 * 4 2 1 31 31 H 1.09001 * 110.84456 * 84.07718 * 5 4 2 32 32 H 1.08998 * 110.85011 * 207.69521 * 5 4 2 33 33 H 0.96999 * 120.00197 * 355.26391 * 10 8 6 34 34 H 1.08007 * 119.97673 * 0.02562 * 12 11 10 35 35 H 1.08002 * 119.69155 * 180.02562 * 13 12 11 36 36 H 1.08004 * 119.71150 * 180.02562 * 14 13 12 37 37 H 1.07998 * 120.03073 * 179.97438 * 15 14 13 38 38 H 0.96998 * 120.00163 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7720 1.2311 5 6 3.4699 -1.2029 0.7207 6 6 3.2112 -1.4427 -0.7829 7 1 3.0623 -2.5067 -0.9666 8 6 4.3807 -0.9432 -1.5913 9 8 4.2377 -0.0088 -2.3513 10 7 5.5857 -1.5346 -1.4698 11 6 6.6403 -1.1390 -2.2865 12 6 6.7619 0.1850 -2.6794 13 6 7.8119 0.5723 -3.4904 14 6 8.7528 -0.3542 -3.9200 15 6 8.6568 -1.6640 -3.5493 16 6 7.6010 -2.0833 -2.7185 17 6 7.4986 -3.4341 -2.3248 18 1 7.0685 -3.6861 -1.3667 19 6 7.9541 -4.4476 -3.1757 20 7 8.0875 -5.6690 -2.7256 21 14 8.3716 -4.0566 -4.9540 22 1 9.8162 -3.7305 -5.0631 23 1 8.0643 -5.2341 -5.8050 24 1 7.5662 -2.8944 -5.4076 25 8 2.0286 -0.7178 -1.1400 26 1 -0.3634 0.4811 0.9082 27 1 -0.3634 0.5460 -0.8707 28 1 -0.3633 -1.0269 -0.0375 29 1 2.1496 -0.1185 2.0996 30 1 1.4466 -1.6399 1.4527 31 1 4.1978 -0.4047 0.8663 32 1 3.7958 -2.1206 1.2102 33 1 5.7177 -2.2360 -0.8129 34 1 6.0361 0.9142 -2.3509 35 1 7.9015 1.6053 -3.7928 36 1 9.5677 -0.0354 -4.5531 37 1 9.3932 -2.3772 -3.8889 38 1 8.4036 -6.3713 -3.3153 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334453533.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:12 Heat of formation + Delta-G solvation = -83.327701 kcal Electronic energy + Delta-G solvation = -21217.918143 eV Core-core repulsion = 18023.997920 eV Total energy + Delta-G solvation = -3193.920223 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.68375 -40.23317 -38.82596 -35.63859 -35.49425 -33.32285 -32.85520 -32.31408 -30.44233 -27.78086 -26.75450 -24.12568 -23.40170 -22.50198 -21.99499 -21.01838 -19.36553 -18.83888 -18.48895 -17.29917 -17.05393 -16.89696 -16.07683 -15.77720 -15.60431 -15.22447 -14.95887 -14.84023 -14.27574 -14.13437 -13.95083 -13.50441 -13.45609 -13.03966 -12.99064 -12.80411 -12.74088 -12.57500 -12.25785 -11.90130 -11.82817 -11.77454 -11.69647 -11.23589 -11.15798 -10.83507 -10.24292 -9.50847 -8.93114 -8.87960 -6.44616 0.63134 0.79587 1.25845 1.36425 1.47842 1.64603 2.10488 2.16273 2.63982 2.87673 3.40236 3.47998 3.67876 3.77422 4.02693 4.14669 4.28383 4.32256 4.40228 4.45242 4.62425 4.67372 4.73995 4.79710 4.85320 4.93016 4.97299 5.00441 5.19852 5.20625 5.30593 5.30668 5.58943 5.67664 5.88938 5.97451 5.99094 6.09717 6.35776 6.55389 6.79630 6.81192 7.30040 8.18073 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.023027 B = 0.005169 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.665263 B = 5415.703407 C = 6102.294840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.056 3.944 3 H 0.059 0.941 4 C -0.135 4.135 5 C -0.143 4.143 6 C 0.070 3.930 7 H 0.121 0.879 8 C 0.485 3.515 9 O -0.567 6.567 10 N -0.635 5.635 11 C 0.026 3.974 12 C -0.095 4.095 13 C -0.217 4.217 14 C -0.092 4.092 15 C -0.239 4.239 16 C 0.063 3.937 17 C -0.470 4.470 18 H 0.077 0.923 19 C 0.055 3.945 20 N -0.845 5.845 21 Si 0.955 3.045 22 H -0.256 1.256 23 H -0.283 1.283 24 H -0.264 1.264 25 O -0.379 6.379 26 H 0.096 0.904 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.414 0.586 34 H 0.113 0.887 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.105 0.895 38 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.248 5.757 8.134 13.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.001 4.001 3 H 0.077 0.923 4 C -0.172 4.172 5 C -0.181 4.181 6 C 0.009 3.991 7 H 0.139 0.861 8 C 0.274 3.726 9 O -0.446 6.446 10 N -0.279 5.279 11 C -0.068 4.068 12 C -0.115 4.115 13 C -0.237 4.237 14 C -0.110 4.110 15 C -0.259 4.259 16 C 0.060 3.940 17 C -0.499 4.499 18 H 0.095 0.905 19 C -0.160 4.160 20 N -0.471 5.471 21 Si 0.781 3.219 22 H -0.181 1.181 23 H -0.210 1.210 24 H -0.189 1.189 25 O -0.298 6.298 26 H 0.115 0.885 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.127 0.873 30 H 0.119 0.881 31 H 0.092 0.908 32 H 0.137 0.863 33 H 0.251 0.749 34 H 0.131 0.869 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.123 0.877 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.467 6.101 7.439 13.497 hybrid contribution 0.600 -0.486 -0.532 0.938 sum -8.867 5.615 6.906 12.563 Atomic orbital electron populations 1.21859 0.91707 1.03270 1.03214 1.23336 0.96392 0.95400 0.84928 0.92310 1.23330 0.94322 1.01700 0.97886 1.23188 0.99620 1.04714 0.90562 1.22692 0.83423 0.97554 0.95420 0.86147 1.21824 0.84433 0.83088 0.83283 1.90612 1.84427 1.29690 1.39874 1.42872 1.08545 1.39411 1.37092 1.17851 0.91620 0.93295 1.04032 1.20983 0.97631 0.93913 0.99023 1.20756 0.97806 0.99634 1.05490 1.20736 0.98621 0.92880 0.98801 1.20845 1.00324 0.96675 1.08035 1.17732 0.91299 0.92895 0.92122 1.19209 1.36728 0.89462 1.04550 0.90521 1.26542 0.91426 0.94350 1.03683 1.69653 1.35554 1.02785 1.39120 0.85659 0.80060 0.77737 0.78479 1.18097 1.21033 1.18872 1.88511 1.39620 1.65048 1.36625 0.88505 0.92976 0.91456 0.87287 0.88103 0.90763 0.86267 0.74913 0.86936 0.85606 0.85302 0.87746 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.62 71.98 0.69 -1.76 16 2 C 0.06 1.27 4.08 31.26 0.13 1.39 16 3 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 4 C -0.14 -2.13 6.57 32.05 0.21 -1.92 16 5 C -0.14 -2.91 6.53 31.87 0.21 -2.70 16 6 C 0.07 2.07 3.94 30.34 0.12 2.18 16 7 H 0.12 3.17 8.14 -2.39 -0.02 3.16 16 8 C 0.49 19.17 6.88 87.66 0.60 19.77 16 9 O -0.57 -27.08 13.90 15.73 0.22 -26.86 16 10 N -0.63 -25.70 5.01 -302.27 -1.51 -27.21 16 11 C 0.03 1.25 6.35 38.88 0.25 1.50 16 12 C -0.10 -4.37 8.69 22.36 0.19 -4.18 16 13 C -0.22 -9.16 10.04 22.41 0.22 -8.93 16 14 C -0.09 -3.88 9.97 22.00 0.22 -3.66 16 15 C -0.24 -11.30 6.95 22.47 0.16 -11.14 16 16 C 0.06 3.17 5.14 -21.18 -0.11 3.06 16 17 C -0.47 -24.40 9.13 23.38 0.21 -24.19 16 18 H 0.08 4.01 7.08 -2.91 -0.02 3.99 16 19 C 0.05 2.82 5.47 85.26 0.47 3.29 16 20 N -0.84 -43.93 13.93 21.83 0.30 -43.62 16 21 Si 0.95 42.73 24.41 68.60 1.67 44.41 16 22 H -0.26 -10.71 6.66 99.48 0.66 -10.05 16 23 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 24 H -0.26 -12.63 6.69 99.48 0.67 -11.96 16 25 O -0.38 -12.12 10.25 -130.19 -1.33 -13.46 16 26 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.10 1.26 8.06 -2.39 -0.02 1.24 16 31 H 0.07 1.65 7.85 -2.39 -0.02 1.63 16 32 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.41 14.82 7.58 -92.71 -0.70 14.12 16 34 H 0.11 5.21 6.15 -2.91 -0.02 5.19 16 35 H 0.13 4.51 8.06 -2.91 -0.02 4.48 16 36 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 37 H 0.10 4.84 4.41 -2.91 -0.01 4.83 16 38 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 Total: -1.00 -66.83 309.83 3.21 -63.62 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: 0.29 Total: 30.39 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 3.57 Total: -27.27 kcal Atomic # 7 Polarization: -69.62 SS G_CDS: -1.21 Total: -70.83 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -1.12 Total: -40.32 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.67 Total: 44.41 kcal Total: -66.83 3.21 -63.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334453533.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.707 kcal (2) G-P(sol) polarization free energy of solvation -66.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds