Wall clock time and date at job start Mon Mar 30 2020 02:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.99819 * 2 1 4 4 C 1.54337 * 109.77807 * 121.16547 * 2 1 3 5 5 C 1.55153 * 103.02062 * 97.49439 * 4 2 1 6 6 H 1.09005 * 111.00690 * 277.23280 * 5 4 2 7 7 O 1.42902 * 111.00355 * 153.38227 * 5 4 2 8 8 C 1.54902 * 101.58326 * 35.30645 * 5 4 2 9 9 N 1.47019 * 109.88099 * 238.90008 * 2 1 3 10 10 C 1.34777 * 125.64564 * 59.56338 * 9 2 1 11 11 O 1.21587 * 120.00282 * 4.30839 * 10 9 2 12 12 C 1.47640 * 120.00023 * 184.30279 * 10 9 2 13 13 C 1.40006 * 119.89857 * 333.23440 * 12 10 9 14 14 C 1.36314 * 120.11318 * 179.97438 * 13 12 10 15 15 C 1.40891 * 119.88787 * 359.97438 * 14 13 12 16 16 C 1.41115 * 120.10358 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99731 * 332.94242 * 16 15 14 18 18 C 1.40221 * 119.99962 * 152.93935 * 16 15 14 19 19 N 1.30645 * 120.00319 * 332.44536 * 18 16 15 20 20 Si 1.86798 * 119.99898 * 152.44186 * 18 16 15 21 21 H 1.48501 * 109.47429 * 179.97438 * 20 18 16 22 22 H 1.48506 * 109.47151 * 60.00039 * 20 18 16 23 23 H 1.48502 * 109.47163 * 300.00087 * 20 18 16 24 24 C 1.40891 * 119.79286 * 0.26622 * 15 14 13 25 25 C 1.36314 * 119.89237 * 359.47224 * 24 15 14 26 26 H 1.08995 * 109.47418 * 179.64625 * 1 2 3 27 27 H 1.08996 * 109.46755 * 299.64503 * 1 2 3 28 28 H 1.09000 * 109.46784 * 59.64274 * 1 2 3 29 29 H 1.09007 * 110.84738 * 339.02601 * 4 2 1 30 30 H 1.08994 * 110.66727 * 215.87860 * 4 2 1 31 31 H 0.96699 * 113.99585 * 186.34737 * 7 5 4 32 32 H 1.09004 * 110.36771 * 204.15167 * 8 5 4 33 33 H 1.09001 * 110.46264 * 81.87556 * 8 5 4 34 34 H 1.08004 * 119.94546 * 359.97438 * 13 12 10 35 35 H 1.07994 * 120.05721 * 179.97438 * 14 13 12 36 36 H 0.96998 * 119.99943 * 353.96412 * 19 18 16 37 37 H 1.08001 * 120.05286 * 179.73234 * 24 15 14 38 38 H 1.07996 * 119.94660 * 180.22817 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0523 -0.7516 1.2427 5 6 2.3561 -2.1697 0.6915 6 1 1.4521 -2.7779 0.6579 7 8 3.3743 -2.8115 1.4620 8 6 2.8612 -1.8466 -0.7368 9 7 2.0300 -0.7141 -1.1839 10 6 1.7754 -0.3845 -2.4656 11 8 1.1430 0.6222 -2.7204 12 6 2.2644 -1.2459 -3.5605 13 6 3.4039 -2.0368 -3.3704 14 6 3.8590 -2.8340 -4.3781 15 6 3.1802 -2.8617 -5.6124 16 6 3.6470 -3.6858 -6.6585 17 1 4.6937 -3.9461 -6.7148 18 6 2.7519 -4.1668 -7.6248 19 7 1.4926 -4.3369 -7.3215 20 14 3.3601 -4.5642 -9.3457 21 1 2.2263 -5.0527 -10.1709 22 1 4.4060 -5.6158 -9.2705 23 1 3.9318 -3.3408 -9.9635 24 6 2.0369 -2.0602 -5.8007 25 6 1.5863 -1.2702 -4.7853 26 1 -0.3634 -1.0276 -0.0063 27 1 -0.3633 0.5083 0.8931 28 1 -0.3633 0.5194 -0.8868 29 1 1.2885 -0.7951 2.0192 30 1 2.9600 -0.2828 1.6225 31 1 3.6667 -3.6588 1.0992 32 1 2.7177 -2.7050 -1.3932 33 1 3.9125 -1.5596 -0.7133 34 1 3.9234 -2.0152 -2.4237 35 1 4.7383 -3.4434 -4.2306 36 1 1.1932 -4.2148 -6.4070 37 1 1.5159 -2.0749 -6.7466 38 1 0.7079 -0.6583 -4.9275 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334496320.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:44 Heat of formation + Delta-G solvation = -68.420786 kcal Electronic energy + Delta-G solvation = -21163.176769 eV Core-core repulsion = 17969.902958 eV Total energy + Delta-G solvation = -3193.273811 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.12815 -38.07093 -37.15842 -35.57762 -34.16466 -31.96371 -30.03170 -29.79416 -29.29912 -26.03213 -25.68222 -23.19121 -21.73388 -21.25432 -20.33043 -18.89005 -18.19765 -17.67688 -16.57022 -15.90958 -15.04562 -14.78102 -14.44626 -14.33708 -14.05273 -13.57693 -13.49571 -13.39073 -12.76252 -12.67504 -12.52815 -12.29198 -12.11370 -11.91586 -11.52160 -11.35818 -11.17159 -11.06784 -10.97460 -10.63787 -10.52048 -10.22794 -9.90114 -9.65848 -9.21879 -9.01757 -8.36491 -7.93656 -7.77678 -7.45312 -4.71139 2.17352 2.79594 3.01380 3.07174 3.24605 3.26306 3.68942 3.83910 4.06546 4.39323 4.43371 4.57969 4.87979 5.13078 5.27066 5.32302 5.39107 5.60504 5.64378 5.70919 5.75253 5.76235 5.93550 5.95315 6.10406 6.11684 6.33660 6.58208 6.69198 6.81947 6.88164 7.18345 7.41702 7.43515 7.52805 7.54399 7.65145 7.94022 8.01599 8.09176 8.49759 8.61551 8.89579 9.75812 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.029270 B = 0.004357 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.371528 B = 6425.599682 C = 7013.204606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.137 3.863 3 H 0.074 0.926 4 C -0.120 4.120 5 C 0.087 3.913 6 H 0.074 0.926 7 O -0.559 6.559 8 C 0.069 3.931 9 N -0.619 5.619 10 C 0.591 3.409 11 O -0.563 6.563 12 C -0.289 4.289 13 C -0.057 4.057 14 C -0.236 4.236 15 C 0.109 3.891 16 C -0.501 4.501 17 H 0.082 0.918 18 C 0.038 3.962 19 N -0.771 5.771 20 Si 1.065 2.935 21 H -0.271 1.271 22 H -0.273 1.273 23 H -0.271 1.271 24 C -0.230 4.230 25 C -0.019 4.019 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.382 0.618 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.302 0.698 37 H 0.107 0.893 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.354 0.047 11.112 11.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.034 3.966 3 H 0.092 0.908 4 C -0.158 4.158 5 C 0.027 3.973 6 H 0.092 0.908 7 O -0.364 6.364 8 C -0.055 4.055 9 N -0.355 5.355 10 C 0.388 3.612 11 O -0.444 6.444 12 C -0.293 4.293 13 C -0.076 4.076 14 C -0.256 4.256 15 C 0.106 3.894 16 C -0.527 4.527 17 H 0.101 0.899 18 C -0.187 4.187 19 N -0.392 5.392 20 Si 0.888 3.112 21 H -0.196 1.196 22 H -0.198 1.198 23 H -0.196 1.196 24 C -0.249 4.249 25 C -0.038 4.038 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.230 0.770 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.125 0.875 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.353 0.628 9.788 9.814 hybrid contribution 0.632 -0.020 1.234 1.387 sum 0.984 0.608 11.022 11.082 Atomic orbital electron populations 1.22155 0.94866 1.02216 1.02800 1.21428 0.94714 0.96411 0.84086 0.90781 1.22705 1.02253 0.93829 0.96966 1.23032 0.90431 0.93955 0.89881 0.90798 1.86479 1.57815 1.39408 1.52732 1.23315 0.95357 0.91345 0.95461 1.48288 1.51914 1.30306 1.04984 1.18341 0.77973 0.84462 0.80453 1.90649 1.43321 1.27254 1.83180 1.18761 1.04372 1.10688 0.95517 1.20927 0.94794 0.94025 0.97827 1.20658 1.04490 1.06342 0.94069 1.17813 0.90620 0.89741 0.91249 1.20823 0.98231 1.26060 1.07576 0.89943 1.27236 0.93031 0.92394 1.06003 1.70391 1.16562 1.27125 1.25137 0.83629 0.76671 0.77940 0.72988 1.19579 1.19834 1.19646 1.20818 1.02518 1.02800 0.98756 1.20353 0.96724 0.95212 0.91537 0.92642 0.92044 0.90899 0.89658 0.89852 0.76989 0.88966 0.90847 0.87658 0.88456 0.88416 0.87529 0.88290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.06 37.16 0.34 -1.84 16 2 C 0.14 1.92 3.48 -66.94 -0.23 1.69 16 3 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.12 -1.34 6.22 -24.89 -0.15 -1.49 16 5 C 0.09 0.99 4.43 -24.59 -0.11 0.88 16 6 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 7 O -0.56 -5.90 13.47 -35.23 -0.47 -6.38 16 8 C 0.07 0.96 4.75 -2.53 -0.01 0.95 16 9 N -0.62 -10.48 3.08 -164.19 -0.51 -10.99 16 10 C 0.59 12.61 7.38 -12.42 -0.09 12.52 16 11 O -0.56 -13.43 15.69 5.29 0.08 -13.35 16 12 C -0.29 -6.53 5.74 -104.73 -0.60 -7.13 16 13 C -0.06 -1.20 7.85 -39.61 -0.31 -1.51 16 14 C -0.24 -5.38 9.73 -39.27 -0.38 -5.76 16 15 C 0.11 2.73 5.24 -106.80 -0.56 2.17 16 16 C -0.50 -12.37 8.95 -37.75 -0.34 -12.71 16 17 H 0.08 1.96 7.98 -52.48 -0.42 1.54 16 18 C 0.04 0.91 4.86 -17.31 -0.08 0.83 16 19 N -0.77 -19.22 12.39 55.56 0.69 -18.54 16 20 Si 1.07 20.02 30.01 -169.99 -5.10 14.91 16 21 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 22 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 23 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 24 C -0.23 -5.73 8.00 -39.27 -0.31 -6.05 16 25 C -0.02 -0.45 9.52 -39.61 -0.38 -0.83 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 1.19 6.88 -51.93 -0.36 0.83 16 29 H 0.08 0.81 7.83 -51.92 -0.41 0.40 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.38 2.56 9.11 45.56 0.42 2.97 16 32 H 0.09 1.35 6.04 -51.93 -0.31 1.04 16 33 H 0.07 1.00 7.33 -51.93 -0.38 0.62 16 34 H 0.11 1.87 4.45 -52.48 -0.23 1.63 16 35 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 36 H 0.30 7.75 6.98 -40.82 -0.28 7.47 16 37 H 0.11 2.72 6.71 -52.49 -0.35 2.37 16 38 H 0.10 2.32 7.86 -52.49 -0.41 1.91 16 LS Contribution 311.12 15.07 4.69 4.69 Total: -1.00 -29.22 311.12 -7.93 -37.15 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -4.08 Total: 10.78 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -3.23 Total: -18.29 kcal Atomic # 7 Polarization: -29.70 SS G_CDS: 0.18 Total: -29.52 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.39 Total: -19.72 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.10 Total: 14.91 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.22 -7.93 -37.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334496320.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.273 kcal (2) G-P(sol) polarization free energy of solvation -29.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds