Wall clock time and date at job start Mon Mar 30 2020 02:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.99819 * 2 1 4 4 C 1.54337 * 109.77807 * 121.16547 * 2 1 3 5 5 C 1.55153 * 103.02062 * 97.49439 * 4 2 1 6 6 H 1.09005 * 111.00690 * 277.23280 * 5 4 2 7 7 O 1.42902 * 111.00355 * 153.38227 * 5 4 2 8 8 C 1.54902 * 101.58326 * 35.30645 * 5 4 2 9 9 N 1.47019 * 109.88099 * 238.90008 * 2 1 3 10 10 C 1.34777 * 125.64564 * 59.56338 * 9 2 1 11 11 O 1.21587 * 120.00282 * 4.30839 * 10 9 2 12 12 C 1.47640 * 120.00023 * 184.30279 * 10 9 2 13 13 C 1.40006 * 119.89857 * 333.23440 * 12 10 9 14 14 C 1.36314 * 120.11318 * 179.97438 * 13 12 10 15 15 C 1.40891 * 119.88787 * 359.97438 * 14 13 12 16 16 C 1.41115 * 120.10358 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99731 * 332.94242 * 16 15 14 18 18 C 1.40221 * 119.99962 * 152.93935 * 16 15 14 19 19 N 1.30645 * 120.00319 * 332.44536 * 18 16 15 20 20 Si 1.86798 * 119.99898 * 152.44186 * 18 16 15 21 21 H 1.48501 * 109.47429 * 179.97438 * 20 18 16 22 22 H 1.48506 * 109.47151 * 60.00039 * 20 18 16 23 23 H 1.48502 * 109.47163 * 300.00087 * 20 18 16 24 24 C 1.40891 * 119.79286 * 0.26622 * 15 14 13 25 25 C 1.36314 * 119.89237 * 359.47224 * 24 15 14 26 26 H 1.08995 * 109.47418 * 179.64625 * 1 2 3 27 27 H 1.08996 * 109.46755 * 299.64503 * 1 2 3 28 28 H 1.09000 * 109.46784 * 59.64274 * 1 2 3 29 29 H 1.09007 * 110.84738 * 339.02601 * 4 2 1 30 30 H 1.08994 * 110.66727 * 215.87860 * 4 2 1 31 31 H 0.96699 * 113.99585 * 186.34737 * 7 5 4 32 32 H 1.09004 * 110.36771 * 204.15167 * 8 5 4 33 33 H 1.09001 * 110.46264 * 81.87556 * 8 5 4 34 34 H 1.08004 * 119.94546 * 359.97438 * 13 12 10 35 35 H 1.07994 * 120.05721 * 179.97438 * 14 13 12 36 36 H 0.96998 * 119.99943 * 353.96412 * 19 18 16 37 37 H 1.08001 * 120.05286 * 179.73234 * 24 15 14 38 38 H 1.07996 * 119.94660 * 180.22817 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0523 -0.7516 1.2427 5 6 2.3561 -2.1697 0.6915 6 1 1.4521 -2.7779 0.6579 7 8 3.3743 -2.8115 1.4620 8 6 2.8612 -1.8466 -0.7368 9 7 2.0300 -0.7141 -1.1839 10 6 1.7754 -0.3845 -2.4656 11 8 1.1430 0.6222 -2.7204 12 6 2.2644 -1.2459 -3.5605 13 6 3.4039 -2.0368 -3.3704 14 6 3.8590 -2.8340 -4.3781 15 6 3.1802 -2.8617 -5.6124 16 6 3.6470 -3.6858 -6.6585 17 1 4.6937 -3.9461 -6.7148 18 6 2.7519 -4.1668 -7.6248 19 7 1.4926 -4.3369 -7.3215 20 14 3.3601 -4.5642 -9.3457 21 1 2.2263 -5.0527 -10.1709 22 1 4.4060 -5.6158 -9.2705 23 1 3.9318 -3.3408 -9.9635 24 6 2.0369 -2.0602 -5.8007 25 6 1.5863 -1.2702 -4.7853 26 1 -0.3634 -1.0276 -0.0063 27 1 -0.3633 0.5083 0.8931 28 1 -0.3633 0.5194 -0.8868 29 1 1.2885 -0.7951 2.0192 30 1 2.9600 -0.2828 1.6225 31 1 3.6667 -3.6588 1.0992 32 1 2.7177 -2.7050 -1.3932 33 1 3.9125 -1.5596 -0.7133 34 1 3.9234 -2.0152 -2.4237 35 1 4.7383 -3.4434 -4.2306 36 1 1.1932 -4.2148 -6.4070 37 1 1.5159 -2.0749 -6.7466 38 1 0.7079 -0.6583 -4.9275 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334496320.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:44 Heat of formation + Delta-G solvation = -87.505456 kcal Electronic energy + Delta-G solvation = -21164.004342 eV Core-core repulsion = 17969.902958 eV Total energy + Delta-G solvation = -3194.101384 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.51425 -39.61637 -38.71260 -36.65384 -35.96038 -33.33345 -31.87465 -31.00800 -30.87643 -27.62233 -26.98030 -24.62848 -23.24075 -22.90631 -21.66891 -20.31879 -19.99099 -18.64597 -18.05794 -17.29583 -16.59668 -16.31173 -15.93076 -15.82217 -15.51704 -14.86044 -14.78931 -14.51186 -14.47263 -14.17704 -13.94628 -13.89234 -13.51246 -13.19220 -13.10422 -12.78989 -12.67509 -12.35761 -12.12299 -12.00024 -11.76951 -11.61932 -11.51024 -11.10043 -10.97081 -10.65218 -9.86750 -9.73151 -9.59009 -9.31586 -6.61371 0.36984 0.92930 1.49393 1.53800 1.79866 1.91336 2.02962 2.27774 2.64242 3.15966 3.40994 3.43728 3.58836 3.94066 4.02884 4.10927 4.20759 4.24255 4.31802 4.34855 4.61058 4.65013 4.72855 4.76123 4.86374 4.90251 4.98347 5.03553 5.06077 5.23879 5.30881 5.45245 5.54783 5.63639 5.72596 5.82453 6.07900 6.20507 6.48653 6.62512 6.76896 6.80798 7.25943 7.86461 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.029270 B = 0.004357 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.371528 B = 6425.599682 C = 7013.204606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.129 3.871 3 H 0.068 0.932 4 C -0.109 4.109 5 C 0.100 3.900 6 H 0.083 0.917 7 O -0.563 6.563 8 C 0.060 3.940 9 N -0.614 5.614 10 C 0.587 3.413 11 O -0.598 6.598 12 C -0.294 4.294 13 C -0.044 4.044 14 C -0.244 4.244 15 C 0.086 3.914 16 C -0.528 4.528 17 H 0.088 0.912 18 C 0.007 3.993 19 N -0.793 5.793 20 Si 1.116 2.884 21 H -0.272 1.272 22 H -0.250 1.250 23 H -0.265 1.265 24 C -0.244 4.244 25 C -0.032 4.032 26 H 0.058 0.942 27 H 0.094 0.906 28 H 0.036 0.964 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.400 0.600 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.144 0.856 35 H 0.116 0.884 36 H 0.287 0.713 37 H 0.089 0.911 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.647 -0.641 13.217 13.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.026 3.974 3 H 0.087 0.913 4 C -0.147 4.147 5 C 0.040 3.960 6 H 0.101 0.899 7 O -0.371 6.371 8 C -0.062 4.062 9 N -0.348 5.348 10 C 0.382 3.618 11 O -0.481 6.481 12 C -0.298 4.298 13 C -0.063 4.063 14 C -0.263 4.263 15 C 0.083 3.917 16 C -0.554 4.554 17 H 0.106 0.894 18 C -0.213 4.213 19 N -0.413 5.413 20 Si 0.932 3.068 21 H -0.196 1.196 22 H -0.174 1.174 23 H -0.189 1.189 24 C -0.264 4.264 25 C -0.051 4.051 26 H 0.077 0.923 27 H 0.112 0.888 28 H 0.055 0.945 29 H 0.129 0.871 30 H 0.108 0.892 31 H 0.251 0.749 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.161 0.839 35 H 0.134 0.866 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.670 -0.089 11.956 12.073 hybrid contribution 0.229 0.256 0.763 0.836 sum 1.899 0.167 12.719 12.861 Atomic orbital electron populations 1.22114 0.94450 1.02314 1.02668 1.21704 0.95149 0.96463 0.84065 0.91347 1.22680 1.03236 0.93024 0.95727 1.22865 0.90818 0.94408 0.87882 0.89910 1.86458 1.57503 1.40633 1.52490 1.23530 0.95514 0.89914 0.97289 1.48245 1.51205 1.31005 1.04384 1.18137 0.77978 0.83903 0.81821 1.90627 1.44793 1.28594 1.84130 1.19078 1.04572 1.10667 0.95531 1.21240 0.93818 0.92335 0.98870 1.20919 1.04940 1.06918 0.93572 1.18141 0.90940 0.90089 0.92551 1.21052 0.98724 1.27004 1.08641 0.89383 1.28616 0.92424 0.91069 1.09210 1.70502 1.17543 1.29170 1.24109 0.83027 0.76697 0.78579 0.68526 1.19646 1.17374 1.18936 1.20726 1.03253 1.03915 0.98470 1.20440 0.97012 0.95287 0.92399 0.92337 0.88770 0.94473 0.87132 0.89162 0.74939 0.89695 0.89830 0.83905 0.86639 0.90121 0.89251 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 9.06 71.98 0.65 -3.31 16 2 C 0.13 3.33 3.48 45.35 0.16 3.49 16 3 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 4 C -0.11 -2.00 6.22 31.79 0.20 -1.80 16 5 C 0.10 1.91 4.43 31.98 0.14 2.05 16 6 H 0.08 1.48 8.14 -2.38 -0.02 1.47 16 7 O -0.56 -9.51 13.47 -148.98 -2.01 -11.52 16 8 C 0.06 1.51 4.75 86.85 0.41 1.92 16 9 N -0.61 -19.87 3.08 -791.63 -2.44 -22.31 16 10 C 0.59 25.01 7.38 86.73 0.64 25.65 16 11 O -0.60 -29.12 15.69 -3.99 -0.06 -29.18 16 12 C -0.29 -13.37 5.74 -19.93 -0.11 -13.49 16 13 C -0.04 -1.81 7.85 22.25 0.17 -1.64 16 14 C -0.24 -10.98 9.73 22.47 0.22 -10.76 16 15 C 0.09 4.40 5.24 -21.27 -0.11 4.28 16 16 C -0.53 -26.46 8.95 23.46 0.21 -26.26 16 17 H 0.09 4.19 7.98 -2.91 -0.02 4.16 16 18 C 0.01 0.31 4.86 85.35 0.41 0.73 16 19 N -0.79 -40.78 12.39 21.87 0.27 -40.51 16 20 Si 1.12 40.04 30.01 68.60 2.06 42.10 16 21 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 22 H -0.25 -8.00 7.11 99.48 0.71 -7.30 16 23 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 24 C -0.24 -12.74 8.00 22.47 0.18 -12.56 16 25 C -0.03 -1.60 9.52 22.25 0.21 -1.39 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.04 1.20 6.88 -2.39 -0.02 1.19 16 29 H 0.11 1.55 7.83 -2.38 -0.02 1.53 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.40 3.73 9.11 -74.06 -0.67 3.06 16 32 H 0.08 2.27 6.04 -2.39 -0.01 2.26 16 33 H 0.08 1.96 7.33 -2.39 -0.02 1.95 16 34 H 0.14 4.68 4.45 -2.91 -0.01 4.67 16 35 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 36 H 0.29 15.43 6.98 -92.71 -0.65 14.78 16 37 H 0.09 4.86 6.71 -2.91 -0.02 4.84 16 38 H 0.09 4.64 7.86 -2.91 -0.02 4.62 16 Total: -1.00 -65.28 311.12 1.74 -63.54 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: 0.53 Total: 30.96 kcal Atomic # 6 Polarization: -36.47 SS G_CDS: 3.39 Total: -33.08 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -2.17 Total: -62.82 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -2.07 Total: -40.70 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.06 Total: 42.10 kcal Total: -65.28 1.74 -63.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334496320.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.966 kcal (2) G-P(sol) polarization free energy of solvation -65.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds