Wall clock time and date at job start Mon Mar 30 2020 02:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.00255 * 2 1 4 4 C 1.54324 * 109.88127 * 238.90976 * 2 1 3 5 5 C 1.55156 * 103.10271 * 262.86660 * 4 2 1 6 6 H 1.08996 * 111.00728 * 82.48289 * 5 4 2 7 7 O 1.42905 * 111.00542 * 206.29810 * 5 4 2 8 8 C 1.54907 * 101.58007 * 324.40628 * 5 4 2 9 9 N 1.47424 * 104.83330 * 37.01312 * 8 5 4 10 10 C 1.34776 * 125.65482 * 155.91473 * 9 8 5 11 11 O 1.21540 * 120.00436 * 176.99477 * 10 9 8 12 12 C 1.47893 * 119.99471 * 356.99174 * 10 9 8 13 13 C 1.39914 * 120.02453 * 26.28989 * 12 10 9 14 14 C 1.38333 * 120.35658 * 179.97438 * 13 12 10 15 15 C 1.37752 * 120.41157 * 0.02562 * 14 13 12 16 16 C 1.40754 * 120.04107 * 359.97438 * 15 14 13 17 17 C 1.41438 * 120.17956 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99993 * 24.74058 * 17 16 15 19 19 C 1.39934 * 120.00052 * 204.73804 * 17 16 15 20 20 N 1.30820 * 120.00144 * 16.67618 * 19 17 16 21 21 Si 1.86803 * 119.99789 * 196.67998 * 19 17 16 22 22 H 1.48499 * 109.47057 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46995 * 120.00007 * 21 19 17 24 24 H 1.48503 * 109.46819 * 239.99764 * 21 19 17 25 25 C 1.38993 * 120.02217 * 206.01982 * 12 10 9 26 26 H 1.08996 * 109.47477 * 181.09105 * 1 2 3 27 27 H 1.08999 * 109.46974 * 301.09194 * 1 2 3 28 28 H 1.09001 * 109.47319 * 61.08524 * 1 2 3 29 29 H 1.08994 * 110.72118 * 144.41389 * 4 2 1 30 30 H 1.09003 * 110.72107 * 21.31554 * 4 2 1 31 31 H 0.96699 * 113.99865 * 180.02562 * 7 5 4 32 32 H 1.09003 * 110.36761 * 155.84545 * 8 5 4 33 33 H 1.09004 * 110.37087 * 278.17234 * 8 5 4 34 34 H 1.07998 * 119.82474 * 0.02562 * 13 12 10 35 35 H 1.07997 * 119.79357 * 180.02562 * 14 13 12 36 36 H 1.07998 * 119.98352 * 179.97438 * 15 14 13 37 37 H 0.97008 * 120.00459 * 179.97438 * 20 19 17 38 38 H 1.08007 * 120.20357 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7494 -1.2428 5 6 2.3509 -2.1713 -0.6971 6 1 1.4436 -2.7745 -0.6655 7 8 3.3646 -2.8162 -1.4709 8 6 2.8583 -1.8565 0.7322 9 7 2.0336 -0.7211 1.1839 10 6 1.7813 -0.3948 2.4670 11 8 1.1297 0.5983 2.7248 12 6 2.2973 -1.2453 3.5614 13 6 3.4452 -2.0204 3.3638 14 6 3.9341 -2.8180 4.3829 15 6 3.2966 -2.8589 5.6033 16 6 2.1405 -2.0860 5.8207 17 6 1.4834 -2.1261 7.0725 18 1 2.0321 -2.3984 7.9620 19 6 0.1222 -1.8130 7.1585 20 7 -0.6163 -1.8034 6.0787 21 14 -0.6403 -1.4088 8.8152 22 1 0.4004 -1.4878 9.8716 23 1 -1.2044 -0.0355 8.7786 24 1 -1.7228 -2.3809 9.1123 25 6 1.6454 -1.2708 4.7887 26 1 -0.3634 -1.0274 0.0196 27 1 -0.3633 0.5307 0.8800 28 1 -0.3634 0.4969 -0.8996 29 1 2.9656 -0.2831 -1.6183 30 1 1.2928 -0.7861 -2.0214 31 1 3.5833 -3.7079 -1.1676 32 1 2.7102 -2.7164 1.3854 33 1 3.9110 -1.5745 0.7076 34 1 3.9528 -1.9954 2.4109 35 1 4.8211 -3.4123 4.2206 36 1 3.6841 -3.4843 6.3939 37 1 -1.5600 -1.5867 6.1384 38 1 0.7617 -0.6704 4.9472 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334496331.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:04 Heat of formation + Delta-G solvation = -58.789851 kcal Electronic energy + Delta-G solvation = -21358.273688 eV Core-core repulsion = 18165.417505 eV Total energy + Delta-G solvation = -3192.856182 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.07515 -37.94488 -36.93486 -35.54693 -33.82633 -32.00061 -29.78741 -29.70872 -29.41767 -25.98746 -25.27813 -23.59724 -21.76657 -20.97251 -20.26801 -18.82651 -17.82186 -17.45777 -16.02586 -15.77960 -15.10515 -14.95893 -14.77999 -14.19463 -13.90967 -13.51872 -13.32294 -13.15629 -12.86465 -12.65692 -12.47682 -12.38373 -11.86260 -11.65707 -11.40137 -11.18748 -11.10651 -11.05891 -10.81282 -10.52764 -10.50659 -10.11371 -10.03861 -9.63275 -9.24698 -8.98751 -8.33162 -7.64349 -7.52581 -6.82798 -4.44295 2.23205 2.78073 3.06354 3.11238 3.12946 3.25383 3.76058 3.90003 4.10033 4.46823 4.53977 4.64850 4.92458 5.18383 5.34234 5.42228 5.54250 5.58495 5.68858 5.75907 5.82739 5.83618 5.97366 6.08987 6.16963 6.29479 6.40889 6.62687 6.77167 6.96216 7.02409 7.18882 7.35749 7.46880 7.65838 7.77498 7.88292 8.01430 8.14701 8.47980 8.77932 8.80393 8.86940 10.12110 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.024178 B = 0.005134 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.789059 B = 5452.783362 C = 6223.274982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.137 3.863 3 H 0.076 0.924 4 C -0.120 4.120 5 C 0.086 3.914 6 H 0.074 0.926 7 O -0.559 6.559 8 C 0.072 3.928 9 N -0.616 5.616 10 C 0.584 3.416 11 O -0.543 6.543 12 C -0.123 4.123 13 C -0.231 4.231 14 C -0.099 4.099 15 C -0.211 4.211 16 C 0.099 3.901 17 C -0.459 4.459 18 H 0.081 0.919 19 C 0.074 3.926 20 N -0.789 5.789 21 Si 0.910 3.090 22 H -0.260 1.260 23 H -0.270 1.270 24 H -0.274 1.274 25 C -0.094 4.094 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.382 0.618 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.283 0.717 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.942 -1.677 -11.168 11.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.094 0.906 4 C -0.158 4.158 5 C 0.026 3.974 6 H 0.092 0.908 7 O -0.364 6.364 8 C -0.052 4.052 9 N -0.352 5.352 10 C 0.377 3.623 11 O -0.421 6.421 12 C -0.127 4.127 13 C -0.250 4.250 14 C -0.118 4.118 15 C -0.231 4.231 16 C 0.097 3.903 17 C -0.488 4.488 18 H 0.100 0.900 19 C -0.145 4.145 20 N -0.414 5.414 21 Si 0.734 3.266 22 H -0.183 1.183 23 H -0.195 1.195 24 H -0.199 1.199 25 C -0.115 4.115 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.229 0.771 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.294 -0.516 -11.347 11.588 hybrid contribution -0.367 -0.460 0.997 1.158 sum 1.927 -0.976 -10.349 10.572 Atomic orbital electron populations 1.22153 0.94668 1.02438 1.02861 1.21543 0.94812 0.96364 0.83926 0.90608 1.22698 1.02236 0.93868 0.96958 1.23036 0.90437 0.93962 0.89963 0.90788 1.86477 1.58893 1.33933 1.57078 1.23307 0.95387 0.91205 0.95314 1.48406 1.51786 1.30140 1.04893 1.18615 0.78392 0.84489 0.80773 1.90681 1.40715 1.27651 1.83024 1.19404 0.98608 1.00548 0.94093 1.20887 0.99862 1.04804 0.99471 1.20457 0.98402 0.98909 0.93984 1.21123 1.01142 1.04046 0.96765 1.17592 0.90887 0.88872 0.92966 1.19624 0.93889 1.40772 0.94532 0.90043 1.25949 0.97523 0.92473 0.98526 1.69783 1.07717 1.33843 1.30059 0.86226 0.79338 0.79002 0.81998 1.18313 1.19549 1.19913 1.21576 1.00440 0.98572 0.90869 0.92526 0.90747 0.92003 0.89833 0.89668 0.77060 0.88689 0.90706 0.87699 0.88911 0.88638 0.90598 0.85089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.06 37.16 0.34 -1.98 16 2 C 0.14 1.98 3.50 -66.70 -0.23 1.75 16 3 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 4 C -0.12 -1.36 6.21 -24.90 -0.15 -1.52 16 5 C 0.09 0.99 4.43 -24.58 -0.11 0.88 16 6 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 7 O -0.56 -5.86 13.47 -35.23 -0.47 -6.34 16 8 C 0.07 1.02 4.74 -2.53 -0.01 1.00 16 9 N -0.62 -10.79 3.09 -163.75 -0.51 -11.29 16 10 C 0.58 13.08 7.42 -12.31 -0.09 12.99 16 11 O -0.54 -13.66 15.66 5.33 0.08 -13.58 16 12 C -0.12 -2.93 5.70 -105.04 -0.60 -3.53 16 13 C -0.23 -4.83 7.95 -38.92 -0.31 -5.14 16 14 C -0.10 -2.09 10.01 -39.72 -0.40 -2.49 16 15 C -0.21 -4.97 9.78 -38.81 -0.38 -5.35 16 16 C 0.10 2.62 5.57 -106.87 -0.60 2.02 16 17 C -0.46 -12.03 9.06 -37.73 -0.34 -12.37 16 18 H 0.08 2.03 7.90 -52.49 -0.41 1.62 16 19 C 0.07 1.85 5.16 -17.35 -0.09 1.76 16 20 N -0.79 -20.67 10.92 55.55 0.61 -20.06 16 21 Si 0.91 18.73 29.59 -169.99 -5.03 13.70 16 22 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 C -0.09 -2.52 8.23 -38.44 -0.32 -2.83 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.29 6.89 -51.93 -0.36 0.94 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 0.82 7.83 -51.93 -0.41 0.42 16 31 H 0.38 2.46 9.12 45.56 0.42 2.88 16 32 H 0.09 1.43 6.17 -51.93 -0.32 1.11 16 33 H 0.07 1.03 7.26 -51.93 -0.38 0.65 16 34 H 0.11 1.87 4.46 -52.49 -0.23 1.63 16 35 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 36 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 37 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 38 H 0.13 3.78 5.95 -52.48 -0.31 3.47 16 LS Contribution 311.57 15.07 4.70 4.70 Total: -1.00 -30.48 311.57 -8.02 -38.50 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -4.10 Total: 9.19 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -3.29 Total: -14.81 kcal Atomic # 7 Polarization: -31.46 SS G_CDS: 0.10 Total: -31.36 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.39 Total: -19.91 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.48 -8.02 -38.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334496331.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.295 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds