Wall clock time and date at job start Mon Mar 30 2020 02:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.00255 * 2 1 4 4 C 1.54324 * 109.88127 * 238.90976 * 2 1 3 5 5 C 1.55156 * 103.10271 * 262.86660 * 4 2 1 6 6 H 1.08996 * 111.00728 * 82.48289 * 5 4 2 7 7 O 1.42905 * 111.00542 * 206.29810 * 5 4 2 8 8 C 1.54907 * 101.58007 * 324.40628 * 5 4 2 9 9 N 1.47424 * 104.83330 * 37.01312 * 8 5 4 10 10 C 1.34776 * 125.65482 * 155.91473 * 9 8 5 11 11 O 1.21540 * 120.00436 * 176.99477 * 10 9 8 12 12 C 1.47893 * 119.99471 * 356.99174 * 10 9 8 13 13 C 1.39914 * 120.02453 * 26.28989 * 12 10 9 14 14 C 1.38333 * 120.35658 * 179.97438 * 13 12 10 15 15 C 1.37752 * 120.41157 * 0.02562 * 14 13 12 16 16 C 1.40754 * 120.04107 * 359.97438 * 15 14 13 17 17 C 1.41438 * 120.17956 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99993 * 24.74058 * 17 16 15 19 19 C 1.39934 * 120.00052 * 204.73804 * 17 16 15 20 20 N 1.30820 * 120.00144 * 16.67618 * 19 17 16 21 21 Si 1.86803 * 119.99789 * 196.67998 * 19 17 16 22 22 H 1.48499 * 109.47057 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46995 * 120.00007 * 21 19 17 24 24 H 1.48503 * 109.46819 * 239.99764 * 21 19 17 25 25 C 1.38993 * 120.02217 * 206.01982 * 12 10 9 26 26 H 1.08996 * 109.47477 * 181.09105 * 1 2 3 27 27 H 1.08999 * 109.46974 * 301.09194 * 1 2 3 28 28 H 1.09001 * 109.47319 * 61.08524 * 1 2 3 29 29 H 1.08994 * 110.72118 * 144.41389 * 4 2 1 30 30 H 1.09003 * 110.72107 * 21.31554 * 4 2 1 31 31 H 0.96699 * 113.99865 * 180.02562 * 7 5 4 32 32 H 1.09003 * 110.36761 * 155.84545 * 8 5 4 33 33 H 1.09004 * 110.37087 * 278.17234 * 8 5 4 34 34 H 1.07998 * 119.82474 * 0.02562 * 13 12 10 35 35 H 1.07997 * 119.79357 * 180.02562 * 14 13 12 36 36 H 1.07998 * 119.98352 * 179.97438 * 15 14 13 37 37 H 0.97008 * 120.00459 * 179.97438 * 20 19 17 38 38 H 1.08007 * 120.20357 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7494 -1.2428 5 6 2.3509 -2.1713 -0.6971 6 1 1.4436 -2.7745 -0.6655 7 8 3.3646 -2.8162 -1.4709 8 6 2.8583 -1.8565 0.7322 9 7 2.0336 -0.7211 1.1839 10 6 1.7813 -0.3948 2.4670 11 8 1.1297 0.5983 2.7248 12 6 2.2973 -1.2453 3.5614 13 6 3.4452 -2.0204 3.3638 14 6 3.9341 -2.8180 4.3829 15 6 3.2966 -2.8589 5.6033 16 6 2.1405 -2.0860 5.8207 17 6 1.4834 -2.1261 7.0725 18 1 2.0321 -2.3984 7.9620 19 6 0.1222 -1.8130 7.1585 20 7 -0.6163 -1.8034 6.0787 21 14 -0.6403 -1.4088 8.8152 22 1 0.4004 -1.4878 9.8716 23 1 -1.2044 -0.0355 8.7786 24 1 -1.7228 -2.3809 9.1123 25 6 1.6454 -1.2708 4.7887 26 1 -0.3634 -1.0274 0.0196 27 1 -0.3633 0.5307 0.8800 28 1 -0.3634 0.4969 -0.8996 29 1 2.9656 -0.2831 -1.6183 30 1 1.2928 -0.7861 -2.0214 31 1 3.5833 -3.7079 -1.1676 32 1 2.7102 -2.7164 1.3854 33 1 3.9110 -1.5745 0.7076 34 1 3.9528 -1.9954 2.4109 35 1 4.8211 -3.4123 4.2206 36 1 3.6841 -3.4843 6.3939 37 1 -1.5600 -1.5867 6.1384 38 1 0.7617 -0.6704 4.9472 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334496331.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:04 Heat of formation + Delta-G solvation = -79.826105 kcal Electronic energy + Delta-G solvation = -21359.185888 eV Core-core repulsion = 18165.417505 eV Total energy + Delta-G solvation = -3193.768383 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.50025 -39.41432 -38.59453 -36.64266 -35.66348 -33.45730 -31.46182 -31.25115 -30.83799 -27.43583 -26.86158 -25.09799 -23.17297 -22.68389 -21.58133 -20.36630 -19.35175 -18.56670 -17.59627 -17.43069 -16.65905 -16.58542 -16.23969 -15.61997 -15.33726 -14.78918 -14.71382 -14.55896 -14.47290 -14.13480 -13.94847 -13.62189 -13.40364 -13.06512 -12.94485 -12.81262 -12.57064 -12.38348 -12.19937 -12.13918 -11.86904 -11.66133 -11.46744 -11.12340 -11.05896 -10.63088 -9.80580 -9.46820 -9.37355 -8.68769 -6.40587 0.40499 0.97966 1.35090 1.45151 1.51167 1.84775 2.03869 2.17517 2.73169 3.18194 3.43011 3.58000 3.66412 3.92358 3.98733 4.13150 4.32098 4.32976 4.44620 4.57031 4.64898 4.69781 4.77693 4.86893 4.88080 4.98181 5.05601 5.07513 5.16729 5.23713 5.30816 5.44669 5.52405 5.83220 5.93552 6.02790 6.26412 6.39773 6.59747 6.85754 6.86104 6.92259 7.18175 8.28377 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.024178 B = 0.005134 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.789059 B = 5452.783362 C = 6223.274982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.128 3.872 3 H 0.071 0.929 4 C -0.108 4.108 5 C 0.100 3.900 6 H 0.082 0.918 7 O -0.561 6.561 8 C 0.062 3.938 9 N -0.610 5.610 10 C 0.575 3.425 11 O -0.587 6.587 12 C -0.135 4.135 13 C -0.210 4.210 14 C -0.095 4.095 15 C -0.216 4.216 16 C 0.068 3.932 17 C -0.497 4.497 18 H 0.084 0.916 19 C 0.030 3.970 20 N -0.829 5.829 21 Si 0.983 3.017 22 H -0.251 1.251 23 H -0.272 1.272 24 H -0.262 1.262 25 C -0.132 4.132 26 H 0.056 0.944 27 H 0.032 0.968 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.401 0.599 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.109 0.891 37 H 0.286 0.714 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.604 -2.960 -13.259 14.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.026 3.974 3 H 0.089 0.911 4 C -0.146 4.146 5 C 0.040 3.960 6 H 0.100 0.900 7 O -0.369 6.369 8 C -0.060 4.060 9 N -0.344 5.344 10 C 0.367 3.633 11 O -0.468 6.468 12 C -0.138 4.138 13 C -0.229 4.229 14 C -0.113 4.113 15 C -0.236 4.236 16 C 0.066 3.934 17 C -0.526 4.526 18 H 0.102 0.898 19 C -0.185 4.185 20 N -0.454 5.454 21 Si 0.803 3.197 22 H -0.175 1.175 23 H -0.197 1.197 24 H -0.187 1.187 25 C -0.153 4.153 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.129 0.871 31 H 0.251 0.749 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.162 0.838 35 H 0.158 0.842 36 H 0.127 0.873 37 H 0.096 0.904 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.998 -1.850 -13.488 14.189 hybrid contribution -0.729 -0.115 1.448 1.625 sum 3.269 -1.965 -12.039 12.629 Atomic orbital electron populations 1.22111 0.94652 1.02246 1.02622 1.21833 0.94959 0.96594 0.84062 0.91065 1.22667 1.03294 0.93120 0.95503 1.22832 0.90856 0.94366 0.87919 0.89988 1.86456 1.58392 1.35424 1.56604 1.23555 0.95629 0.89650 0.97212 1.48392 1.50998 1.30900 1.04111 1.18507 0.78411 0.84004 0.82332 1.90647 1.42661 1.29432 1.84087 1.19713 0.99345 1.00978 0.93749 1.21361 0.98095 1.02434 1.01012 1.20943 0.99224 0.98525 0.92566 1.21430 1.00246 1.03489 0.98431 1.17936 0.92393 0.89782 0.93298 1.19895 0.94883 1.42960 0.94860 0.89810 1.26835 0.97675 0.91723 1.02218 1.69878 1.08055 1.35211 1.32304 0.85152 0.78616 0.78611 0.77325 1.17461 1.19679 1.18665 1.21359 1.00842 1.00127 0.92961 0.92481 0.94867 0.88488 0.88908 0.87125 0.74855 0.89365 0.89400 0.83809 0.84227 0.87262 0.90358 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.39 9.06 71.98 0.65 -3.74 16 2 C 0.13 3.50 3.50 45.25 0.16 3.66 16 3 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 4 C -0.11 -2.05 6.21 31.78 0.20 -1.85 16 5 C 0.10 1.93 4.43 31.99 0.14 2.07 16 6 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 7 O -0.56 -9.14 13.47 -148.98 -2.01 -11.15 16 8 C 0.06 1.58 4.74 86.85 0.41 1.99 16 9 N -0.61 -20.82 3.09 -790.28 -2.44 -23.26 16 10 C 0.58 26.48 7.42 86.80 0.64 27.12 16 11 O -0.59 -31.32 15.66 -3.84 -0.06 -31.38 16 12 C -0.13 -6.54 5.70 -20.13 -0.11 -6.66 16 13 C -0.21 -8.38 7.95 22.70 0.18 -8.20 16 14 C -0.09 -3.74 10.01 22.18 0.22 -3.52 16 15 C -0.22 -10.10 9.78 22.77 0.22 -9.88 16 16 C 0.07 3.73 5.57 -21.32 -0.12 3.61 16 17 C -0.50 -27.22 9.06 23.47 0.21 -27.01 16 18 H 0.08 4.34 7.90 -2.91 -0.02 4.32 16 19 C 0.03 1.57 5.16 85.25 0.44 2.01 16 20 N -0.83 -46.14 10.92 21.82 0.24 -45.90 16 21 Si 0.98 39.85 29.59 68.60 2.03 41.88 16 22 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 24 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 25 C -0.13 -7.46 8.23 23.01 0.19 -7.27 16 26 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.03 1.19 6.89 -2.39 -0.02 1.17 16 28 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.11 1.61 7.83 -2.39 -0.02 1.59 16 31 H 0.40 3.29 9.12 -74.06 -0.68 2.62 16 32 H 0.09 2.38 6.17 -2.39 -0.01 2.37 16 33 H 0.09 2.05 7.26 -2.39 -0.02 2.03 16 34 H 0.14 4.57 4.46 -2.91 -0.01 4.56 16 35 H 0.14 4.24 8.06 -2.91 -0.02 4.21 16 36 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 37 H 0.29 14.60 8.30 -92.70 -0.77 13.83 16 38 H 0.10 5.97 5.95 -2.91 -0.02 5.95 16 Total: -1.00 -71.75 311.57 1.61 -70.15 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: 0.41 Total: 27.32 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: 3.44 Total: -27.66 kcal Atomic # 7 Polarization: -66.96 SS G_CDS: -2.21 Total: -69.16 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -2.07 Total: -42.53 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -71.75 1.61 -70.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334496331.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.678 kcal (2) G-P(sol) polarization free energy of solvation -71.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds