Wall clock time and date at job start Mon Mar 30 2020 02:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 110.35450 * 2 1 4 4 O 1.43647 * 110.30973 * 237.85511 * 2 1 3 5 5 C 1.43240 * 109.97178 * 216.65807 * 4 2 1 6 6 C 1.54374 * 107.58986 * 1.71158 * 5 4 2 7 7 C 1.54944 * 110.31306 * 122.14536 * 2 1 3 8 8 H 1.09003 * 111.12473 * 37.43197 * 7 2 1 9 9 C 1.50708 * 111.12441 * 273.27949 * 7 2 1 10 10 O 1.21279 * 119.99738 * 359.97438 * 9 7 2 11 11 N 1.34771 * 119.99929 * 179.97438 * 9 7 2 12 12 C 1.39125 * 120.00342 * 175.26132 * 11 9 7 13 13 C 1.38651 * 120.28020 * 34.21037 * 12 11 9 14 14 C 1.38225 * 120.03130 * 180.02562 * 13 12 11 15 15 C 1.38861 * 120.61763 * 359.97438 * 14 13 12 16 16 C 1.36466 * 120.57711 * 0.02562 * 15 14 13 17 17 C 1.40739 * 119.94447 * 359.70542 * 16 15 14 18 18 C 1.41067 * 120.30205 * 180.29542 * 17 16 15 19 19 H 1.08002 * 119.99679 * 148.80328 * 18 17 16 20 20 C 1.39950 * 120.00108 * 328.80450 * 18 17 16 21 21 N 1.30856 * 119.99938 * 167.54043 * 20 18 17 22 22 Si 1.86803 * 120.00230 * 347.53928 * 20 18 17 23 23 H 1.48492 * 109.47097 * 92.49884 * 22 20 18 24 24 H 1.48497 * 109.47198 * 212.50359 * 22 20 18 25 25 H 1.48498 * 109.46723 * 332.49880 * 22 20 18 26 26 H 1.08993 * 109.47606 * 180.69031 * 1 2 3 27 27 H 1.09009 * 109.47052 * 300.69047 * 1 2 3 28 28 H 1.09001 * 109.47179 * 60.68749 * 1 2 3 29 29 H 1.09001 * 109.82557 * 121.22888 * 5 4 2 30 30 H 1.09001 * 109.83013 * 242.19297 * 5 4 2 31 31 H 1.08998 * 110.84734 * 139.54564 * 6 5 4 32 32 H 1.09004 * 110.84883 * 262.96157 * 6 5 4 33 33 H 0.97005 * 120.00219 * 355.25626 * 11 9 7 34 34 H 1.08000 * 119.98331 * 0.02562 * 13 12 11 35 35 H 1.08005 * 119.68979 * 179.97438 * 14 13 12 36 36 H 1.08000 * 119.71389 * 180.02562 * 15 14 13 37 37 H 1.08000 * 120.02737 * 179.97438 * 16 15 14 38 38 H 0.96999 * 119.99772 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 8 2.0285 -0.7168 -1.1407 5 6 3.2112 -1.4420 -0.7841 6 6 3.4699 -1.2026 0.7189 7 6 2.0678 -0.7731 1.2303 8 1 1.4470 -1.6416 1.4508 9 6 2.1809 0.1293 2.4320 10 8 1.8665 1.2974 2.3448 11 7 2.6316 -0.3617 3.6034 12 6 2.8297 0.4908 4.6849 13 6 1.9942 1.5802 4.8786 14 6 2.1960 2.4242 5.9545 15 6 3.2316 2.1929 6.8503 16 6 4.0688 1.1282 6.6836 17 6 3.8817 0.2503 5.5996 18 6 4.7389 -0.8562 5.4236 19 1 4.3643 -1.7629 4.9720 20 6 6.0745 -0.7789 5.8342 21 7 6.8026 -1.8643 5.9001 22 14 6.8181 0.8735 6.2881 23 1 6.6709 1.0981 7.7485 24 1 8.2589 0.8836 5.9284 25 1 6.1157 1.9524 5.5480 26 1 -0.3634 -1.0275 0.0124 27 1 -0.3633 0.5246 0.8838 28 1 -0.3633 0.5031 -0.8961 29 1 3.0623 -2.5059 -0.9689 30 1 4.0574 -1.0791 -1.3674 31 1 3.7965 -2.1207 1.2073 32 1 4.2001 -0.4066 0.8649 33 1 2.8177 -1.3095 3.6926 34 1 1.1853 1.7695 4.1884 35 1 1.5422 3.2714 6.0999 36 1 3.3758 2.8614 7.6861 37 1 4.8717 0.9569 7.3854 38 1 7.7282 -1.8108 6.1850 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334590062.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:58 Heat of formation + Delta-G solvation = -66.938847 kcal Electronic energy + Delta-G solvation = -21422.652474 eV Core-core repulsion = 18229.442925 eV Total energy + Delta-G solvation = -3193.209549 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.37144 -38.85363 -37.31634 -34.01478 -33.67519 -32.43316 -31.48190 -30.50299 -28.77983 -26.42323 -25.09800 -22.94475 -21.90829 -21.39371 -20.38907 -19.53309 -17.60897 -17.42086 -16.83116 -16.05816 -15.46923 -14.97836 -14.75491 -14.56432 -14.08736 -13.88407 -13.64898 -13.40569 -12.89768 -12.70565 -12.47268 -12.16351 -12.15761 -11.91908 -11.72718 -11.40001 -11.12315 -10.96872 -10.93060 -10.79573 -10.46797 -10.07861 -9.89675 -9.54450 -9.43407 -9.37319 -8.89574 -7.69773 -7.20321 -7.02471 -4.56582 2.34074 2.60318 3.03556 3.08697 3.21408 3.27606 3.63174 3.85133 3.91864 4.45702 4.52617 4.70114 4.86260 5.11484 5.18510 5.26710 5.37470 5.40723 5.61580 5.63751 5.74611 5.90360 5.99708 6.02358 6.09485 6.16649 6.21672 6.30133 6.56917 6.67565 6.92264 7.01352 7.10504 7.30839 7.42942 7.63085 7.75735 7.90498 8.15963 8.19864 8.50944 8.65292 8.81303 9.99499 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.019737 B = 0.006036 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.318647 B = 4637.884621 C = 5675.914975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.097 3.903 3 H 0.087 0.913 4 O -0.383 6.383 5 C 0.054 3.946 6 C -0.145 4.145 7 C -0.141 4.141 8 H 0.109 0.891 9 C 0.514 3.486 10 O -0.536 6.536 11 N -0.635 5.635 12 C 0.029 3.971 13 C -0.077 4.077 14 C -0.227 4.227 15 C -0.086 4.086 16 C -0.226 4.226 17 C 0.085 3.915 18 C -0.449 4.449 19 H 0.088 0.912 20 C 0.085 3.915 21 N -0.813 5.813 22 Si 0.912 3.088 23 H -0.270 1.270 24 H -0.293 1.293 25 H -0.243 1.243 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.405 0.595 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.431 -0.576 -7.416 9.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.039 3.961 3 H 0.104 0.896 4 O -0.303 6.303 5 C -0.022 4.022 6 C -0.183 4.183 7 C -0.163 4.163 8 H 0.127 0.873 9 C 0.301 3.699 10 O -0.414 6.414 11 N -0.276 5.276 12 C -0.065 4.065 13 C -0.097 4.097 14 C -0.246 4.246 15 C -0.105 4.105 16 C -0.246 4.246 17 C 0.080 3.920 18 C -0.478 4.478 19 H 0.106 0.894 20 C -0.133 4.133 21 N -0.437 5.437 22 Si 0.740 3.260 23 H -0.197 1.197 24 H -0.221 1.221 25 H -0.167 1.167 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.240 0.760 34 H 0.134 0.866 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.121 0.879 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.502 0.041 -7.689 9.454 hybrid contribution 0.863 -0.005 0.655 1.084 sum -4.639 0.036 -7.033 8.425 Atomic orbital electron populations 1.21856 0.93392 1.02345 1.02833 1.22773 0.95017 0.95942 0.82321 0.89559 1.88393 1.42599 1.65157 1.34166 1.23078 0.88098 0.96579 0.94458 1.23104 0.95972 1.03672 0.95582 1.23016 0.98845 0.99638 0.94814 0.87338 1.20025 0.78210 0.88197 0.83486 1.90648 1.49230 1.17355 1.84199 1.42857 1.63522 1.11390 1.09861 1.17592 1.01512 0.96453 0.90903 1.20811 0.97552 0.94737 0.96610 1.20343 1.02583 1.02641 0.99080 1.20389 0.95560 0.96711 0.97854 1.20641 1.03466 1.00301 1.00145 1.17556 0.90966 0.92953 0.90482 1.19169 0.94103 0.99189 1.35385 0.89415 1.26062 0.97333 0.98486 0.91436 1.69647 1.09582 1.29699 1.34818 0.86310 0.76811 0.83165 0.79751 1.19650 1.22065 1.16669 0.92283 0.90704 0.91854 0.91137 0.91249 0.88920 0.89676 0.75957 0.86563 0.88502 0.88757 0.87885 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.62 37.15 0.36 -1.44 16 2 C 0.10 1.36 3.22 -25.71 -0.08 1.28 16 3 H 0.09 1.37 7.38 -51.93 -0.38 0.98 16 4 O -0.38 -5.36 11.04 -35.23 -0.39 -5.75 16 5 C 0.05 0.63 7.79 37.88 0.30 0.93 16 6 C -0.15 -1.85 6.49 -24.79 -0.16 -2.01 16 7 C -0.14 -1.95 2.90 -89.52 -0.26 -2.21 16 8 H 0.11 1.28 8.06 -51.93 -0.42 0.86 16 9 C 0.51 9.21 7.00 -10.98 -0.08 9.13 16 10 O -0.54 -11.16 13.09 5.56 0.07 -11.08 16 11 N -0.63 -12.16 5.03 -9.47 -0.05 -12.21 16 12 C 0.03 0.66 6.35 -83.17 -0.53 0.13 16 13 C -0.08 -1.71 8.69 -39.43 -0.34 -2.05 16 14 C -0.23 -4.83 10.04 -39.36 -0.39 -5.23 16 15 C -0.09 -1.87 9.97 -39.99 -0.40 -2.27 16 16 C -0.23 -5.31 6.95 -39.28 -0.27 -5.59 16 17 C 0.08 2.05 5.14 -106.65 -0.55 1.50 16 18 C -0.45 -11.22 9.13 -37.87 -0.35 -11.56 16 19 H 0.09 2.19 7.08 -52.49 -0.37 1.82 16 20 C 0.09 2.13 5.47 -17.33 -0.09 2.03 16 21 N -0.81 -20.61 13.93 55.55 0.77 -19.83 16 22 Si 0.91 20.47 24.41 -169.99 -4.15 16.32 16 23 H -0.27 -5.87 6.66 56.52 0.38 -5.49 16 24 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.24 -5.73 6.69 56.52 0.38 -5.35 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.96 8.14 -51.92 -0.42 0.53 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 1.21 8.03 -51.93 -0.42 0.79 16 33 H 0.41 7.01 7.58 -40.82 -0.31 6.70 16 34 H 0.12 2.53 6.15 -52.49 -0.32 2.21 16 35 H 0.10 1.82 8.06 -52.48 -0.42 1.40 16 36 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.10 2.40 4.42 -52.49 -0.23 2.17 16 38 H 0.29 6.64 8.30 -40.82 -0.34 6.31 16 LS Contribution 308.67 15.07 4.65 4.65 Total: -1.00 -28.27 308.67 -6.96 -35.23 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -5.02 Total: 10.03 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -2.85 Total: -17.35 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.73 Total: -32.04 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.32 Total: -16.83 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.15 Total: 16.32 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.27 -6.96 -35.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334590062.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.713 kcal (2) G-P(sol) polarization free energy of solvation -28.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds