Wall clock time and date at job start Mon Mar 30 2020 02:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 110.35450 * 2 1 4 4 O 1.43647 * 110.30973 * 237.85511 * 2 1 3 5 5 C 1.43240 * 109.97178 * 216.65807 * 4 2 1 6 6 C 1.54374 * 107.58986 * 1.71158 * 5 4 2 7 7 C 1.54944 * 110.31306 * 122.14536 * 2 1 3 8 8 H 1.09003 * 111.12473 * 37.43197 * 7 2 1 9 9 C 1.50708 * 111.12441 * 273.27949 * 7 2 1 10 10 O 1.21279 * 119.99738 * 359.97438 * 9 7 2 11 11 N 1.34771 * 119.99929 * 179.97438 * 9 7 2 12 12 C 1.39125 * 120.00342 * 175.26132 * 11 9 7 13 13 C 1.38651 * 120.28020 * 34.21037 * 12 11 9 14 14 C 1.38225 * 120.03130 * 180.02562 * 13 12 11 15 15 C 1.38861 * 120.61763 * 359.97438 * 14 13 12 16 16 C 1.36466 * 120.57711 * 0.02562 * 15 14 13 17 17 C 1.40739 * 119.94447 * 359.70542 * 16 15 14 18 18 C 1.41067 * 120.30205 * 180.29542 * 17 16 15 19 19 H 1.08002 * 119.99679 * 148.80328 * 18 17 16 20 20 C 1.39950 * 120.00108 * 328.80450 * 18 17 16 21 21 N 1.30856 * 119.99938 * 167.54043 * 20 18 17 22 22 Si 1.86803 * 120.00230 * 347.53928 * 20 18 17 23 23 H 1.48492 * 109.47097 * 92.49884 * 22 20 18 24 24 H 1.48497 * 109.47198 * 212.50359 * 22 20 18 25 25 H 1.48498 * 109.46723 * 332.49880 * 22 20 18 26 26 H 1.08993 * 109.47606 * 180.69031 * 1 2 3 27 27 H 1.09009 * 109.47052 * 300.69047 * 1 2 3 28 28 H 1.09001 * 109.47179 * 60.68749 * 1 2 3 29 29 H 1.09001 * 109.82557 * 121.22888 * 5 4 2 30 30 H 1.09001 * 109.83013 * 242.19297 * 5 4 2 31 31 H 1.08998 * 110.84734 * 139.54564 * 6 5 4 32 32 H 1.09004 * 110.84883 * 262.96157 * 6 5 4 33 33 H 0.97005 * 120.00219 * 355.25626 * 11 9 7 34 34 H 1.08000 * 119.98331 * 0.02562 * 13 12 11 35 35 H 1.08005 * 119.68979 * 179.97438 * 14 13 12 36 36 H 1.08000 * 119.71389 * 180.02562 * 15 14 13 37 37 H 1.08000 * 120.02737 * 179.97438 * 16 15 14 38 38 H 0.96999 * 119.99772 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 8 2.0285 -0.7168 -1.1407 5 6 3.2112 -1.4420 -0.7841 6 6 3.4699 -1.2026 0.7189 7 6 2.0678 -0.7731 1.2303 8 1 1.4470 -1.6416 1.4508 9 6 2.1809 0.1293 2.4320 10 8 1.8665 1.2974 2.3448 11 7 2.6316 -0.3617 3.6034 12 6 2.8297 0.4908 4.6849 13 6 1.9942 1.5802 4.8786 14 6 2.1960 2.4242 5.9545 15 6 3.2316 2.1929 6.8503 16 6 4.0688 1.1282 6.6836 17 6 3.8817 0.2503 5.5996 18 6 4.7389 -0.8562 5.4236 19 1 4.3643 -1.7629 4.9720 20 6 6.0745 -0.7789 5.8342 21 7 6.8026 -1.8643 5.9001 22 14 6.8181 0.8735 6.2881 23 1 6.6709 1.0981 7.7485 24 1 8.2589 0.8836 5.9284 25 1 6.1157 1.9524 5.5480 26 1 -0.3634 -1.0275 0.0124 27 1 -0.3633 0.5246 0.8838 28 1 -0.3633 0.5031 -0.8961 29 1 3.0623 -2.5059 -0.9689 30 1 4.0574 -1.0791 -1.3674 31 1 3.7965 -2.1207 1.2073 32 1 4.2001 -0.4066 0.8649 33 1 2.8177 -1.3095 3.6926 34 1 1.1853 1.7695 4.1884 35 1 1.5422 3.2714 6.0999 36 1 3.3758 2.8614 7.6861 37 1 4.8717 0.9569 7.3854 38 1 7.7282 -1.8108 6.1850 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334590062.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:57 Heat of formation + Delta-G solvation = -84.358414 kcal Electronic energy + Delta-G solvation = -21423.407843 eV Core-core repulsion = 18229.442925 eV Total energy + Delta-G solvation = -3193.964918 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.73720 -40.22789 -38.90337 -35.62675 -35.49511 -33.59570 -32.50827 -32.30012 -30.41281 -27.61944 -26.80564 -24.35679 -23.37173 -22.64369 -21.90671 -20.98768 -19.37054 -18.88460 -18.34503 -17.25562 -17.06139 -16.41806 -16.08528 -15.89127 -15.69471 -15.26273 -15.11613 -14.91366 -14.39010 -14.32218 -13.96277 -13.58091 -13.43769 -13.25218 -12.97621 -12.89149 -12.74195 -12.40219 -12.24933 -11.99733 -11.82641 -11.80517 -11.69193 -11.23110 -11.01185 -10.62574 -10.43535 -9.50124 -8.92363 -8.87732 -6.44348 0.63509 0.80648 1.25733 1.35793 1.47137 1.66377 2.10378 2.25189 2.64301 2.75641 3.40159 3.45879 3.62816 3.72770 4.05293 4.15462 4.19536 4.29904 4.38136 4.41745 4.61475 4.65641 4.70877 4.80045 4.81713 4.91102 4.94163 5.00225 5.12348 5.21111 5.24575 5.31341 5.60081 5.68461 5.92660 5.98193 5.99054 6.09859 6.36575 6.53219 6.80145 6.81310 7.27693 8.18072 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.019737 B = 0.006036 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.318647 B = 4637.884621 C = 5675.914975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.097 3.903 3 H 0.061 0.939 4 O -0.393 6.393 5 C 0.054 3.946 6 C -0.144 4.144 7 C -0.133 4.133 8 H 0.137 0.863 9 C 0.516 3.484 10 O -0.566 6.566 11 N -0.636 5.636 12 C 0.028 3.972 13 C -0.093 4.093 14 C -0.217 4.217 15 C -0.093 4.093 16 C -0.239 4.239 17 C 0.062 3.938 18 C -0.468 4.468 19 H 0.076 0.924 20 C 0.055 3.945 21 N -0.845 5.845 22 Si 0.954 3.046 23 H -0.258 1.258 24 H -0.284 1.284 25 H -0.262 1.262 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.413 0.587 34 H 0.119 0.881 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.103 0.897 38 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.193 -0.335 -7.738 9.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.040 3.960 3 H 0.079 0.921 4 O -0.313 6.313 5 C -0.022 4.022 6 C -0.182 4.182 7 C -0.154 4.154 8 H 0.155 0.845 9 C 0.304 3.696 10 O -0.446 6.446 11 N -0.278 5.278 12 C -0.067 4.067 13 C -0.114 4.114 14 C -0.236 4.236 15 C -0.112 4.112 16 C -0.259 4.259 17 C 0.058 3.942 18 C -0.498 4.498 19 H 0.094 0.906 20 C -0.160 4.160 21 N -0.472 5.472 22 Si 0.781 3.219 23 H -0.184 1.184 24 H -0.211 1.211 25 H -0.186 1.186 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.096 0.904 31 H 0.127 0.873 32 H 0.082 0.918 33 H 0.249 0.751 34 H 0.137 0.863 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.120 0.880 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.262 0.262 -8.015 10.174 hybrid contribution 0.966 0.008 0.705 1.196 sum -5.296 0.270 -7.310 9.030 Atomic orbital electron populations 1.21823 0.91964 1.03422 1.02798 1.22693 0.96141 0.94749 0.82446 0.92100 1.88384 1.43403 1.65360 1.34142 1.23243 0.87738 0.97849 0.93414 1.23115 0.94691 1.03618 0.96756 1.23028 1.00200 0.99559 0.92651 0.84523 1.20695 0.76660 0.88333 0.83903 1.90626 1.50309 1.18956 1.84664 1.42918 1.63713 1.11526 1.09690 1.17824 1.00721 0.96778 0.91337 1.21021 0.97894 0.95125 0.97333 1.20773 1.02243 1.02693 0.97901 1.20736 0.94942 0.96614 0.98872 1.20831 1.04035 1.00964 1.00073 1.17742 0.91642 0.93370 0.91462 1.19182 0.94694 0.99298 1.36588 0.90633 1.26542 0.97543 1.00379 0.91565 1.69663 1.10232 1.30669 1.36635 0.85660 0.76416 0.80002 0.79867 1.18392 1.21129 1.18649 0.90590 0.91559 0.91124 0.88574 0.90400 0.87342 0.91781 0.75058 0.86311 0.85552 0.85501 0.87984 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.62 71.98 0.69 -2.57 16 2 C 0.10 2.63 3.22 31.26 0.10 2.73 16 3 H 0.06 1.94 7.38 -2.39 -0.02 1.93 16 4 O -0.39 -10.24 11.04 -148.98 -1.64 -11.88 16 5 C 0.05 1.13 7.79 72.45 0.56 1.69 16 6 C -0.14 -3.46 6.49 31.85 0.21 -3.26 16 7 C -0.13 -3.49 2.90 -10.08 -0.03 -3.52 16 8 H 0.14 2.85 8.06 -2.39 -0.02 2.83 16 9 C 0.52 18.23 7.00 87.66 0.61 18.84 16 10 O -0.57 -23.51 13.09 -3.03 -0.04 -23.55 16 11 N -0.64 -24.26 5.03 -302.28 -1.52 -25.78 16 12 C 0.03 1.25 6.35 38.88 0.25 1.50 16 13 C -0.09 -4.05 8.69 22.37 0.19 -3.86 16 14 C -0.22 -8.73 10.04 22.42 0.22 -8.50 16 15 C -0.09 -3.81 9.97 22.00 0.22 -3.60 16 16 C -0.24 -11.04 6.95 22.47 0.16 -10.88 16 17 C 0.06 3.00 5.14 -21.18 -0.11 2.89 16 18 C -0.47 -23.72 9.13 23.38 0.21 -23.51 16 19 H 0.08 3.88 7.08 -2.91 -0.02 3.86 16 20 C 0.05 2.75 5.47 85.25 0.47 3.21 16 21 N -0.85 -43.35 13.93 21.83 0.30 -43.05 16 22 Si 0.95 41.93 24.41 68.60 1.67 43.60 16 23 H -0.26 -10.72 6.66 99.48 0.66 -10.06 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.26 -12.19 6.69 99.48 0.67 -11.52 16 26 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.06 1.81 8.03 -2.39 -0.02 1.79 16 33 H 0.41 14.25 7.58 -92.70 -0.70 13.55 16 34 H 0.12 5.08 6.15 -2.91 -0.02 5.06 16 35 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 36 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 37 H 0.10 4.66 4.42 -2.91 -0.01 4.65 16 38 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 Total: -1.00 -60.12 308.67 2.83 -57.30 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: 0.29 Total: 32.19 kcal Atomic # 6 Polarization: -32.59 SS G_CDS: 3.76 Total: -28.83 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -1.22 Total: -68.83 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -1.68 Total: -35.43 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.67 Total: 43.60 kcal Total: -60.12 2.83 -57.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334590062.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.061 kcal (2) G-P(sol) polarization free energy of solvation -60.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds