Wall clock time and date at job start Mon Mar 30 2020 02:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.86661 * 2 1 4 4 O 1.43739 * 109.88200 * 238.98779 * 2 1 3 5 5 C 1.44376 * 106.97506 * 214.06126 * 4 2 1 6 6 C 1.54990 * 103.49100 * 40.06374 * 5 4 2 7 7 C 1.54104 * 109.87724 * 121.15466 * 2 1 3 8 8 H 1.09001 * 110.48532 * 240.13178 * 7 2 1 9 9 C 1.50703 * 110.49071 * 2.64874 * 7 2 1 10 10 O 1.21276 * 119.99801 * 94.82573 * 9 7 2 11 11 N 1.34774 * 119.99690 * 274.82595 * 9 7 2 12 12 C 1.39129 * 119.99515 * 185.66116 * 11 9 7 13 13 C 1.38641 * 120.28408 * 24.80602 * 12 11 9 14 14 C 1.38225 * 120.03152 * 180.02562 * 13 12 11 15 15 C 1.38870 * 120.61763 * 359.97216 * 14 13 12 16 16 C 1.36469 * 120.57468 * 0.02562 * 15 14 13 17 17 C 1.40741 * 119.94086 * 359.70339 * 16 15 14 18 18 C 1.41069 * 120.29726 * 180.29515 * 17 16 15 19 19 H 1.07998 * 119.99974 * 214.95971 * 18 17 16 20 20 C 1.39970 * 119.99944 * 34.96302 * 18 17 16 21 21 N 1.30852 * 119.99881 * 5.21552 * 20 18 17 22 22 Si 1.86797 * 119.99683 * 185.21523 * 20 18 17 23 23 H 1.48503 * 109.47024 * 60.00239 * 22 20 18 24 24 H 1.48502 * 109.46982 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47438 * 300.00041 * 22 20 18 26 26 H 1.09007 * 109.46593 * 174.72844 * 1 2 3 27 27 H 1.08997 * 109.47200 * 294.72594 * 1 2 3 28 28 H 1.08995 * 109.46991 * 54.72970 * 1 2 3 29 29 H 1.09005 * 110.61557 * 158.56083 * 5 4 2 30 30 H 1.08997 * 110.61763 * 281.55685 * 5 4 2 31 31 H 1.08996 * 110.91349 * 81.17673 * 6 5 4 32 32 H 1.09003 * 110.90697 * 204.77417 * 6 5 4 33 33 H 0.96997 * 120.00321 * 5.66448 * 11 9 7 34 34 H 1.08002 * 119.98440 * 359.97438 * 13 12 11 35 35 H 1.07999 * 119.69241 * 179.97438 * 14 13 12 36 36 H 1.08000 * 119.71353 * 180.02562 * 15 14 13 37 37 H 1.07996 * 120.02366 * 179.97438 * 16 15 14 38 38 H 0.96996 * 119.99146 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0189 -0.6964 -1.1585 5 6 3.2380 -1.3631 -0.7663 6 6 2.9195 -1.8922 0.6552 7 6 2.0540 -0.7498 1.2402 8 1 2.6619 -0.0882 1.8573 9 6 0.9072 -1.3103 2.0413 10 8 0.5485 -2.4556 1.8671 11 7 0.2803 -0.5388 2.9514 12 6 -0.6985 -1.0884 3.7732 13 6 -0.6974 -2.4470 4.0496 14 6 -1.6727 -2.9877 4.8663 15 6 -2.6601 -2.1817 5.4177 16 6 -2.6850 -0.8414 5.1623 17 6 -1.7001 -0.2648 4.3386 18 6 -1.7151 1.1209 4.0746 19 1 -1.4041 1.4899 3.1084 20 6 -2.1329 2.0175 5.0649 21 7 -2.4120 1.5814 6.2666 22 14 -2.2921 3.8364 4.6708 23 1 -3.2812 4.0216 3.5788 24 1 -2.7474 4.5670 5.8809 25 1 -0.9738 4.3668 4.2398 26 1 -0.3633 -1.0234 -0.0944 27 1 -0.3633 0.4298 0.9334 28 1 -0.3633 0.5934 -0.8390 29 1 3.4585 -2.1889 -1.4428 30 1 4.0685 -0.6578 -0.7363 31 1 2.3541 -2.8227 0.6064 32 1 3.8332 -2.0240 1.2349 33 1 0.5116 0.3997 3.0334 34 1 0.0655 -3.0833 3.6258 35 1 -1.6668 -4.0467 5.0776 36 1 -3.4149 -2.6195 6.0541 37 1 -3.4572 -0.2230 5.5954 38 1 -2.7012 2.2029 6.9529 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334590064.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:00 Heat of formation + Delta-G solvation = -63.248977 kcal Electronic energy + Delta-G solvation = -21595.041184 eV Core-core repulsion = 18401.991640 eV Total energy + Delta-G solvation = -3193.049545 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.51984 -38.66857 -37.04035 -33.88629 -33.63791 -32.38645 -31.36670 -29.63973 -28.45029 -26.24442 -25.22318 -22.78248 -22.12496 -21.29716 -20.28692 -19.05560 -17.41547 -16.85422 -16.65567 -16.03686 -15.66097 -15.29303 -14.92261 -14.48052 -14.18568 -13.64946 -13.08204 -12.80776 -12.74509 -12.45036 -12.22325 -12.11366 -11.79632 -11.75139 -11.38147 -11.21354 -11.15188 -10.99425 -10.87570 -10.80570 -10.53386 -10.17915 -9.79071 -9.70903 -9.33452 -9.27552 -8.78469 -7.35465 -6.94555 -6.66222 -4.45068 2.54913 2.83985 3.02523 3.04209 3.16563 3.38661 3.74899 3.88329 3.90266 4.47593 4.63880 4.79429 4.97443 5.06559 5.19761 5.37069 5.45778 5.54410 5.60005 5.65848 5.75084 5.96773 6.09255 6.17680 6.30698 6.43596 6.49578 6.55707 6.86538 6.90859 7.04245 7.12711 7.25392 7.63966 7.65323 7.93343 8.05522 8.08873 8.39556 8.53038 8.78244 8.81812 8.98515 10.20958 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.017584 B = 0.006292 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.930739 B = 4448.682857 C = 5705.888853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.091 3.909 3 H 0.076 0.924 4 O -0.372 6.372 5 C 0.048 3.952 6 C -0.142 4.142 7 C -0.145 4.145 8 H 0.101 0.899 9 C 0.513 3.487 10 O -0.534 6.534 11 N -0.636 5.636 12 C 0.027 3.973 13 C -0.103 4.103 14 C -0.213 4.213 15 C -0.121 4.121 16 C -0.135 4.135 17 C 0.099 3.901 18 C -0.476 4.476 19 H 0.074 0.926 20 C 0.077 3.923 21 N -0.806 5.806 22 Si 0.909 3.091 23 H -0.265 1.265 24 H -0.279 1.279 25 H -0.267 1.267 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.404 0.596 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.119 0.881 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.398 0.581 -7.100 11.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.033 3.967 3 H 0.094 0.906 4 O -0.291 6.291 5 C -0.029 4.029 6 C -0.180 4.180 7 C -0.167 4.167 8 H 0.120 0.880 9 C 0.300 3.700 10 O -0.412 6.412 11 N -0.278 5.278 12 C -0.067 4.067 13 C -0.123 4.123 14 C -0.233 4.233 15 C -0.140 4.140 16 C -0.155 4.155 17 C 0.096 3.904 18 C -0.507 4.507 19 H 0.092 0.908 20 C -0.140 4.140 21 N -0.432 5.432 22 Si 0.734 3.266 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.191 1.191 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.099 0.901 33 H 0.240 0.760 34 H 0.134 0.866 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.137 0.863 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.002 -0.122 -7.195 10.761 hybrid contribution 0.149 1.429 0.344 1.477 sum 8.151 1.307 -6.851 10.727 Atomic orbital electron populations 1.22184 0.93003 1.03938 1.03338 1.22597 0.95837 0.94956 0.83326 0.90632 1.88895 1.39634 1.67756 1.32794 1.23532 0.87633 0.96249 0.95442 1.23134 0.99706 0.99478 0.95658 1.22814 0.96821 0.99194 0.97831 0.88043 1.19986 0.83834 0.86428 0.79781 1.90611 1.65522 1.18395 1.66640 1.43044 1.37101 1.13304 1.34306 1.17873 0.92879 0.93267 1.02632 1.20779 0.99344 0.93746 0.98401 1.20369 0.99819 0.97759 1.05382 1.20503 0.98445 0.94747 1.00287 1.20907 0.99440 0.92963 1.02233 1.17359 0.88326 0.92729 0.92028 1.19208 1.41247 0.90802 0.99438 0.90835 1.25808 0.92659 1.01136 0.94377 1.69768 1.33978 1.37159 1.02319 0.86352 0.79638 0.81786 0.78809 1.18991 1.20387 1.19134 0.91080 0.89965 0.91785 0.88894 0.92274 0.88259 0.90068 0.75960 0.86606 0.89144 0.89327 0.86288 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 8.41 37.16 0.31 -2.28 16 2 C 0.09 1.25 4.05 -26.15 -0.11 1.14 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 4 O -0.37 -5.35 11.19 -35.23 -0.39 -5.75 16 5 C 0.05 0.53 7.72 38.21 0.29 0.83 16 6 C -0.14 -1.76 6.64 -24.73 -0.16 -1.93 16 7 C -0.14 -2.00 3.43 -90.24 -0.31 -2.31 16 8 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 9 C 0.51 9.41 4.71 -10.99 -0.05 9.36 16 10 O -0.53 -11.51 12.54 5.56 0.07 -11.44 16 11 N -0.64 -12.53 4.04 -9.48 -0.04 -12.57 16 12 C 0.03 0.65 6.46 -83.17 -0.54 0.11 16 13 C -0.10 -2.45 8.71 -39.44 -0.34 -2.79 16 14 C -0.21 -4.94 10.04 -39.35 -0.39 -5.34 16 15 C -0.12 -2.84 9.97 -39.99 -0.40 -3.24 16 16 C -0.14 -3.44 8.57 -39.27 -0.34 -3.78 16 17 C 0.10 2.51 5.51 -106.65 -0.59 1.92 16 18 C -0.48 -11.61 8.18 -37.86 -0.31 -11.92 16 19 H 0.07 1.68 7.45 -52.49 -0.39 1.29 16 20 C 0.08 1.82 5.31 -17.32 -0.09 1.73 16 21 N -0.81 -20.05 11.00 55.55 0.61 -19.44 16 22 Si 0.91 17.79 29.56 -169.99 -5.03 12.77 16 23 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 24 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 26 H 0.07 1.27 7.52 -51.93 -0.39 0.88 16 27 H 0.08 1.34 6.48 -51.93 -0.34 1.01 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.10 1.47 6.82 -51.93 -0.35 1.12 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.40 7.23 7.61 -40.82 -0.31 6.92 16 34 H 0.12 2.73 5.79 -52.49 -0.30 2.43 16 35 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 37 H 0.12 3.10 6.51 -52.49 -0.34 2.76 16 38 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 LS Contribution 308.78 15.07 4.65 4.65 Total: -1.00 -28.65 308.78 -8.09 -36.74 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -4.94 Total: 13.53 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -3.02 Total: -18.50 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.57 Total: -32.01 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.32 Total: -17.19 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.77 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.65 -8.09 -36.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334590064.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.507 kcal (2) G-P(sol) polarization free energy of solvation -28.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds