Wall clock time and date at job start Mon Mar 30 2020 02:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.86661 * 2 1 4 4 O 1.43739 * 109.88200 * 238.98779 * 2 1 3 5 5 C 1.44376 * 106.97506 * 214.06126 * 4 2 1 6 6 C 1.54990 * 103.49100 * 40.06374 * 5 4 2 7 7 C 1.54104 * 109.87724 * 121.15466 * 2 1 3 8 8 H 1.09001 * 110.48532 * 240.13178 * 7 2 1 9 9 C 1.50703 * 110.49071 * 2.64874 * 7 2 1 10 10 O 1.21276 * 119.99801 * 94.82573 * 9 7 2 11 11 N 1.34774 * 119.99690 * 274.82595 * 9 7 2 12 12 C 1.39129 * 119.99515 * 185.66116 * 11 9 7 13 13 C 1.38641 * 120.28408 * 24.80602 * 12 11 9 14 14 C 1.38225 * 120.03152 * 180.02562 * 13 12 11 15 15 C 1.38870 * 120.61763 * 359.97216 * 14 13 12 16 16 C 1.36469 * 120.57468 * 0.02562 * 15 14 13 17 17 C 1.40741 * 119.94086 * 359.70339 * 16 15 14 18 18 C 1.41069 * 120.29726 * 180.29515 * 17 16 15 19 19 H 1.07998 * 119.99974 * 214.95971 * 18 17 16 20 20 C 1.39970 * 119.99944 * 34.96302 * 18 17 16 21 21 N 1.30852 * 119.99881 * 5.21552 * 20 18 17 22 22 Si 1.86797 * 119.99683 * 185.21523 * 20 18 17 23 23 H 1.48503 * 109.47024 * 60.00239 * 22 20 18 24 24 H 1.48502 * 109.46982 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47438 * 300.00041 * 22 20 18 26 26 H 1.09007 * 109.46593 * 174.72844 * 1 2 3 27 27 H 1.08997 * 109.47200 * 294.72594 * 1 2 3 28 28 H 1.08995 * 109.46991 * 54.72970 * 1 2 3 29 29 H 1.09005 * 110.61557 * 158.56083 * 5 4 2 30 30 H 1.08997 * 110.61763 * 281.55685 * 5 4 2 31 31 H 1.08996 * 110.91349 * 81.17673 * 6 5 4 32 32 H 1.09003 * 110.90697 * 204.77417 * 6 5 4 33 33 H 0.96997 * 120.00321 * 5.66448 * 11 9 7 34 34 H 1.08002 * 119.98440 * 359.97438 * 13 12 11 35 35 H 1.07999 * 119.69241 * 179.97438 * 14 13 12 36 36 H 1.08000 * 119.71353 * 180.02562 * 15 14 13 37 37 H 1.07996 * 120.02366 * 179.97438 * 16 15 14 38 38 H 0.96996 * 119.99146 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0189 -0.6964 -1.1585 5 6 3.2380 -1.3631 -0.7663 6 6 2.9195 -1.8922 0.6552 7 6 2.0540 -0.7498 1.2402 8 1 2.6619 -0.0882 1.8573 9 6 0.9072 -1.3103 2.0413 10 8 0.5485 -2.4556 1.8671 11 7 0.2803 -0.5388 2.9514 12 6 -0.6985 -1.0884 3.7732 13 6 -0.6974 -2.4470 4.0496 14 6 -1.6727 -2.9877 4.8663 15 6 -2.6601 -2.1817 5.4177 16 6 -2.6850 -0.8414 5.1623 17 6 -1.7001 -0.2648 4.3386 18 6 -1.7151 1.1209 4.0746 19 1 -1.4041 1.4899 3.1084 20 6 -2.1329 2.0175 5.0649 21 7 -2.4120 1.5814 6.2666 22 14 -2.2921 3.8364 4.6708 23 1 -3.2812 4.0216 3.5788 24 1 -2.7474 4.5670 5.8809 25 1 -0.9738 4.3668 4.2398 26 1 -0.3633 -1.0234 -0.0944 27 1 -0.3633 0.4298 0.9334 28 1 -0.3633 0.5934 -0.8390 29 1 3.4585 -2.1889 -1.4428 30 1 4.0685 -0.6578 -0.7363 31 1 2.3541 -2.8227 0.6064 32 1 3.8332 -2.0240 1.2349 33 1 0.5116 0.3997 3.0334 34 1 0.0655 -3.0833 3.6258 35 1 -1.6668 -4.0467 5.0776 36 1 -3.4149 -2.6195 6.0541 37 1 -3.4572 -0.2230 5.5954 38 1 -2.7012 2.2029 6.9529 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334590064.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:00 Heat of formation + Delta-G solvation = -80.086685 kcal Electronic energy + Delta-G solvation = -21595.771322 eV Core-core repulsion = 18401.991640 eV Total energy + Delta-G solvation = -3193.779682 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.86856 -40.05643 -38.69046 -35.53693 -35.45222 -33.57586 -32.42107 -31.49676 -30.19279 -27.47478 -26.96358 -24.22117 -23.14244 -23.02487 -21.91797 -20.53167 -19.20247 -18.23316 -18.03849 -17.47963 -16.94478 -16.66437 -16.23781 -15.92082 -15.83894 -15.07359 -14.72968 -14.45029 -14.25299 -13.88523 -13.59575 -13.37692 -13.36699 -13.08739 -12.93756 -12.84706 -12.69911 -12.21920 -12.15587 -11.99756 -11.93081 -11.80515 -11.54914 -11.09855 -11.04581 -10.73224 -10.37489 -9.25562 -8.75003 -8.45185 -6.32425 0.82443 1.05410 1.43790 1.53625 1.54544 1.80943 2.24519 2.35189 2.82552 2.87608 3.40271 3.64878 3.71422 3.89491 4.09419 4.23945 4.29850 4.35006 4.51616 4.55375 4.61285 4.62188 4.75951 4.85656 4.94006 4.94249 5.07524 5.16591 5.19247 5.22687 5.31824 5.44991 5.79274 5.83908 5.91580 6.13032 6.17018 6.26183 6.64828 6.76817 6.96919 7.02629 7.38346 8.44058 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.017584 B = 0.006292 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.930739 B = 4448.682857 C = 5705.888853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.094 3.906 3 H 0.109 0.891 4 O -0.395 6.395 5 C 0.049 3.951 6 C -0.142 4.142 7 C -0.140 4.140 8 H 0.136 0.864 9 C 0.513 3.487 10 O -0.569 6.569 11 N -0.635 5.635 12 C 0.026 3.974 13 C -0.119 4.119 14 C -0.218 4.218 15 C -0.127 4.127 16 C -0.159 4.159 17 C 0.071 3.929 18 C -0.494 4.494 19 H 0.083 0.917 20 C 0.036 3.964 21 N -0.839 5.839 22 Si 0.980 3.020 23 H -0.265 1.265 24 H -0.277 1.277 25 H -0.252 1.252 26 H 0.036 0.964 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.413 0.587 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.315 2.114 -8.057 13.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.036 3.964 3 H 0.127 0.873 4 O -0.315 6.315 5 C -0.027 4.027 6 C -0.180 4.180 7 C -0.161 4.161 8 H 0.154 0.846 9 C 0.302 3.698 10 O -0.449 6.449 11 N -0.277 5.277 12 C -0.069 4.069 13 C -0.139 4.139 14 C -0.238 4.238 15 C -0.145 4.145 16 C -0.179 4.179 17 C 0.067 3.933 18 C -0.524 4.524 19 H 0.101 0.899 20 C -0.177 4.177 21 N -0.466 5.466 22 Si 0.802 3.198 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.176 1.176 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.251 0.749 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.945 1.408 -8.166 12.945 hybrid contribution -0.448 0.843 0.618 1.137 sum 9.497 2.250 -7.548 12.338 Atomic orbital electron populations 1.22136 0.95072 1.01813 1.03281 1.22668 0.94244 0.96478 0.82996 0.87318 1.88872 1.41235 1.68242 1.33104 1.23759 0.87249 0.97212 0.94473 1.23158 1.00059 0.97559 0.97176 1.22925 0.95226 1.00289 0.97685 0.84601 1.20829 0.84136 0.85758 0.79041 1.90590 1.66679 1.20171 1.67496 1.43062 1.36505 1.13882 1.34239 1.18016 0.93244 0.93235 1.02431 1.20962 0.99899 0.94084 0.98995 1.20674 0.99321 0.98985 1.04771 1.20728 0.99103 0.94238 1.00475 1.20934 0.99759 0.93738 1.03511 1.17700 0.88990 0.93771 0.92808 1.19458 1.42054 0.90787 1.00129 0.89883 1.26662 0.91707 1.05511 0.93851 1.69857 1.34514 1.38872 1.03321 0.85262 0.80068 0.76064 0.78415 1.18993 1.20146 1.17569 0.94477 0.91102 0.90452 0.87670 0.89112 0.91327 0.87352 0.74923 0.86645 0.86804 0.87114 0.87800 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.03 8.41 71.98 0.61 -4.42 16 2 C 0.09 2.34 4.05 30.97 0.13 2.46 16 3 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 4 O -0.39 -10.40 11.19 -148.98 -1.67 -12.07 16 5 C 0.05 0.92 7.72 72.66 0.56 1.48 16 6 C -0.14 -3.18 6.64 31.89 0.21 -2.97 16 7 C -0.14 -3.53 3.43 -10.55 -0.04 -3.57 16 8 H 0.14 2.53 8.14 -2.39 -0.02 2.51 16 9 C 0.51 18.62 4.71 87.66 0.41 19.03 16 10 O -0.57 -24.99 12.54 -3.02 -0.04 -25.03 16 11 N -0.63 -24.92 4.04 -302.29 -1.22 -26.14 16 12 C 0.03 1.24 6.46 38.87 0.25 1.49 16 13 C -0.12 -5.77 8.71 22.36 0.19 -5.57 16 14 C -0.22 -10.14 10.04 22.42 0.23 -9.92 16 15 C -0.13 -6.04 9.97 22.01 0.22 -5.82 16 16 C -0.16 -8.33 8.57 22.47 0.19 -8.14 16 17 C 0.07 3.68 5.51 -21.18 -0.12 3.56 16 18 C -0.49 -24.28 8.18 23.38 0.19 -24.08 16 19 H 0.08 3.78 7.45 -2.91 -0.02 3.76 16 20 C 0.04 1.71 5.31 85.26 0.45 2.16 16 21 N -0.84 -42.29 11.00 21.83 0.24 -42.05 16 22 Si 0.98 35.81 29.56 68.60 2.03 37.84 16 23 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 24 H -0.28 -9.91 7.11 99.48 0.71 -9.21 16 25 H -0.25 -8.55 7.11 99.48 0.71 -7.85 16 26 H 0.04 1.35 7.52 -2.38 -0.02 1.33 16 27 H 0.07 2.29 6.48 -2.39 -0.02 2.27 16 28 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 2.00 6.82 -2.39 -0.02 1.98 16 32 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.41 14.45 7.61 -92.71 -0.71 13.75 16 34 H 0.12 5.55 5.79 -2.91 -0.02 5.53 16 35 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 36 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 37 H 0.10 5.64 6.51 -2.91 -0.02 5.62 16 38 H 0.28 13.19 8.30 -92.71 -0.77 12.42 16 Total: -1.00 -63.76 308.78 3.21 -60.55 By element: Atomic # 1 Polarization: 40.83 SS G_CDS: 0.38 Total: 41.20 kcal Atomic # 6 Polarization: -37.80 SS G_CDS: 3.49 Total: -34.30 kcal Atomic # 7 Polarization: -67.21 SS G_CDS: -0.98 Total: -68.19 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -1.70 Total: -37.10 kcal Atomic # 14 Polarization: 35.81 SS G_CDS: 2.03 Total: 37.84 kcal Total: -63.76 3.21 -60.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334590064.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.534 kcal (2) G-P(sol) polarization free energy of solvation -63.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds