Wall clock time and date at job start Mon Mar 30 2020 02:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.86709 * 2 1 4 4 O 1.43744 * 109.88005 * 121.15900 * 2 1 3 5 5 C 1.44381 * 106.97398 * 145.93463 * 4 2 1 6 6 C 1.54990 * 103.49262 * 319.94145 * 5 4 2 7 7 C 1.54102 * 109.87769 * 238.99267 * 2 1 3 8 8 H 1.08999 * 110.48911 * 119.74003 * 7 2 1 9 9 C 1.50694 * 110.49013 * 357.21955 * 7 2 1 10 10 O 1.21286 * 120.00463 * 273.08387 * 9 7 2 11 11 N 1.34773 * 119.99981 * 93.35577 * 9 7 2 12 12 C 1.39132 * 120.00480 * 184.32993 * 11 9 7 13 13 C 1.38643 * 120.27941 * 331.32110 * 12 11 9 14 14 C 1.38227 * 120.02738 * 179.73960 * 13 12 11 15 15 C 1.38868 * 120.61680 * 0.55790 * 14 13 12 16 16 C 1.36458 * 120.57663 * 359.69610 * 15 14 13 17 17 C 1.40736 * 119.94442 * 0.02562 * 16 15 14 18 18 C 1.41074 * 120.30227 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99993 * 149.00288 * 18 17 16 20 20 C 1.39962 * 119.99688 * 329.00133 * 18 17 16 21 21 N 1.30855 * 120.00237 * 348.31552 * 20 18 17 22 22 Si 1.86798 * 120.00096 * 168.31680 * 20 18 17 23 23 H 1.48496 * 109.47134 * 89.99718 * 22 20 18 24 24 H 1.48501 * 109.47278 * 210.00112 * 22 20 18 25 25 H 1.48504 * 109.46782 * 329.99878 * 22 20 18 26 26 H 1.09006 * 109.46824 * 182.72041 * 1 2 3 27 27 H 1.08990 * 109.47118 * 302.72024 * 1 2 3 28 28 H 1.08994 * 109.46752 * 62.72518 * 1 2 3 29 29 H 1.09003 * 110.61243 * 78.44731 * 5 4 2 30 30 H 1.08998 * 110.61839 * 201.27863 * 5 4 2 31 31 H 1.09001 * 110.90815 * 278.82184 * 6 5 4 32 32 H 1.09001 * 110.90545 * 155.21767 * 6 5 4 33 33 H 0.97006 * 120.00031 * 4.33448 * 11 9 7 34 34 H 1.07993 * 119.98645 * 0.02562 * 13 12 11 35 35 H 1.08004 * 119.68785 * 180.24866 * 14 13 12 36 36 H 1.07998 * 119.71155 * 179.71856 * 15 14 13 37 37 H 1.07998 * 120.03060 * 180.02562 * 16 15 14 38 38 H 0.96989 * 120.00034 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0189 -0.6994 1.1568 5 6 3.2380 -1.3652 0.7629 6 6 2.9196 -1.8906 -0.6601 7 6 2.0540 -0.7466 -1.2421 8 1 2.6601 -0.0828 -1.8587 9 6 0.9074 -1.3078 -2.0429 10 8 0.4572 -2.4012 -1.7733 11 7 0.3858 -0.5969 -3.0622 12 6 -0.7296 -1.0736 -3.7438 13 6 -0.9634 -2.4372 -3.8344 14 6 -2.0761 -2.9048 -4.5082 15 6 -2.9624 -2.0207 -5.1092 16 6 -2.7536 -0.6740 -5.0398 17 6 -1.6316 -0.1714 -4.3549 18 6 -1.4087 1.2195 -4.2781 19 1 -0.9139 1.6402 -3.4152 20 6 -1.8288 2.0541 -5.3201 21 7 -2.2169 1.5362 -6.4574 22 14 -1.8357 3.9075 -5.0874 23 1 -0.5231 4.4635 -5.5036 24 1 -2.9124 4.5066 -5.9163 25 1 -2.0770 4.2259 -3.6571 26 1 -0.3633 -1.0266 0.0488 27 1 -0.3633 0.5554 0.8645 28 1 -0.3632 0.4709 -0.9134 29 1 4.0685 -0.6598 0.7348 30 1 3.4600 -2.1909 1.4388 31 1 2.3540 -2.8212 -0.6136 32 1 3.8332 -2.0207 -1.2401 33 1 0.7880 0.2471 -3.3208 34 1 -0.2785 -3.1340 -3.3745 35 1 -2.2551 -3.9680 -4.5720 36 1 -3.8246 -2.4023 -5.6358 37 1 -3.4488 0.0057 -5.5101 38 1 -2.5076 2.1146 -7.1796 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334590067.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:06 Heat of formation + Delta-G solvation = -64.045939 kcal Electronic energy + Delta-G solvation = -21593.854652 eV Core-core repulsion = 18400.770549 eV Total energy + Delta-G solvation = -3193.084103 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.49024 -38.64881 -37.02299 -33.81926 -33.67246 -32.36668 -31.37282 -29.64460 -28.47515 -26.21376 -25.20693 -22.75629 -22.12208 -21.29238 -20.28589 -19.05896 -17.41280 -16.86002 -16.67325 -15.94350 -15.65685 -15.26880 -14.93559 -14.48650 -14.18030 -13.61893 -13.12548 -12.79044 -12.72719 -12.43849 -12.17230 -12.08696 -11.81767 -11.72377 -11.40610 -11.20250 -11.13248 -10.99303 -10.88635 -10.79941 -10.52853 -10.17678 -9.77691 -9.69370 -9.29856 -9.25376 -8.71787 -7.38587 -6.99979 -6.70230 -4.43815 2.57215 2.83329 3.01875 3.05155 3.17042 3.36049 3.77418 3.86478 3.91895 4.51273 4.61346 4.80449 4.97882 5.06925 5.20975 5.37330 5.48291 5.55794 5.61550 5.67897 5.75168 5.98905 6.13916 6.16463 6.32660 6.47751 6.52763 6.58470 6.88921 6.92551 7.04086 7.13228 7.26639 7.63301 7.68054 7.93678 8.07332 8.09562 8.40226 8.52865 8.78459 8.81058 9.00190 10.15842 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.017785 B = 0.006208 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.965396 B = 4509.323582 C = 5682.008596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.094 3.906 3 H 0.075 0.925 4 O -0.371 6.371 5 C 0.048 3.952 6 C -0.142 4.142 7 C -0.144 4.144 8 H 0.099 0.901 9 C 0.513 3.487 10 O -0.535 6.535 11 N -0.635 5.635 12 C 0.019 3.981 13 C -0.097 4.097 14 C -0.221 4.221 15 C -0.116 4.116 16 C -0.143 4.143 17 C 0.102 3.898 18 C -0.472 4.472 19 H 0.075 0.925 20 C 0.078 3.922 21 N -0.799 5.799 22 Si 0.906 3.094 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.262 1.262 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.403 0.597 34 H 0.119 0.881 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.118 0.882 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.385 0.532 6.969 10.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.035 3.965 3 H 0.093 0.907 4 O -0.291 6.291 5 C -0.028 4.028 6 C -0.180 4.180 7 C -0.166 4.166 8 H 0.117 0.883 9 C 0.300 3.700 10 O -0.413 6.413 11 N -0.276 5.276 12 C -0.075 4.075 13 C -0.117 4.117 14 C -0.241 4.241 15 C -0.135 4.135 16 C -0.163 4.163 17 C 0.098 3.902 18 C -0.503 4.503 19 H 0.093 0.907 20 C -0.140 4.140 21 N -0.425 5.425 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.186 1.186 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.239 0.761 34 H 0.137 0.863 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.136 0.864 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.895 -0.143 7.144 10.649 hybrid contribution 0.275 1.406 -0.523 1.525 sum 8.171 1.264 6.622 10.593 Atomic orbital electron populations 1.22142 0.92974 1.04181 1.03043 1.22560 0.95890 0.94805 0.83203 0.90697 1.88897 1.39599 1.67656 1.32900 1.23518 0.87655 0.96286 0.95361 1.23141 0.99674 0.99391 0.95769 1.22788 0.96812 0.99072 0.97891 0.88286 1.19998 0.84252 0.85684 0.80112 1.90602 1.61649 1.20455 1.68607 1.42976 1.29143 1.24295 1.31181 1.17798 0.90403 0.92371 1.06955 1.20893 0.98150 0.93826 0.98857 1.20362 0.99037 0.97320 1.07376 1.20484 0.98542 0.94337 1.00167 1.20850 0.98137 0.93696 1.03657 1.17384 0.89046 0.92410 0.91324 1.19263 1.35635 0.91414 1.03957 0.90717 1.25830 0.92721 1.01127 0.94289 1.69797 1.32297 1.37762 1.02599 0.86342 0.78745 0.82205 0.79611 1.19569 1.20128 1.18566 0.90778 0.91905 0.90172 0.92313 0.88912 0.88385 0.90079 0.76110 0.86292 0.89216 0.89406 0.86449 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 8.41 37.16 0.31 -2.34 16 2 C 0.09 1.31 4.05 -26.15 -0.11 1.20 16 3 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 4 O -0.37 -5.42 11.19 -35.23 -0.39 -5.81 16 5 C 0.05 0.54 7.72 38.21 0.29 0.84 16 6 C -0.14 -1.76 6.65 -24.72 -0.16 -1.92 16 7 C -0.14 -1.99 3.44 -90.24 -0.31 -2.30 16 8 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 9 C 0.51 9.39 4.65 -10.99 -0.05 9.34 16 10 O -0.53 -11.49 12.09 5.55 0.07 -11.42 16 11 N -0.63 -12.49 4.52 -9.48 -0.04 -12.54 16 12 C 0.02 0.44 6.44 -83.17 -0.54 -0.10 16 13 C -0.10 -2.33 8.75 -39.44 -0.35 -2.67 16 14 C -0.22 -5.15 10.04 -39.35 -0.39 -5.54 16 15 C -0.12 -2.75 9.97 -39.99 -0.40 -3.15 16 16 C -0.14 -3.64 8.59 -39.28 -0.34 -3.98 16 17 C 0.10 2.58 5.53 -106.65 -0.59 1.99 16 18 C -0.47 -11.49 8.27 -37.86 -0.31 -11.80 16 19 H 0.07 1.70 7.39 -52.49 -0.39 1.31 16 20 C 0.08 1.83 5.22 -17.32 -0.09 1.74 16 21 N -0.80 -19.77 11.05 55.55 0.61 -19.16 16 22 Si 0.91 17.68 29.58 -169.99 -5.03 12.65 16 23 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 24 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 25 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 26 H 0.07 1.37 7.05 -51.93 -0.37 1.00 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.08 1.36 7.11 -51.93 -0.37 0.99 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.10 1.44 6.89 -51.93 -0.36 1.08 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.40 7.17 7.78 -40.82 -0.32 6.85 16 34 H 0.12 2.83 5.73 -52.49 -0.30 2.53 16 35 H 0.09 1.88 8.06 -52.48 -0.42 1.45 16 36 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 37 H 0.12 3.06 6.43 -52.49 -0.34 2.72 16 38 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 LS Contribution 309.10 15.07 4.66 4.66 Total: -1.00 -28.62 309.10 -8.11 -36.72 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -4.95 Total: 13.58 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -3.03 Total: -18.69 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: 0.57 Total: -31.69 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.33 Total: -17.24 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.62 -8.11 -36.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334590067.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.321 kcal (2) G-P(sol) polarization free energy of solvation -28.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds