Wall clock time and date at job start Mon Mar 30 2020 02:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.86709 * 2 1 4 4 O 1.43744 * 109.88005 * 121.15900 * 2 1 3 5 5 C 1.44381 * 106.97398 * 145.93463 * 4 2 1 6 6 C 1.54990 * 103.49262 * 319.94145 * 5 4 2 7 7 C 1.54102 * 109.87769 * 238.99267 * 2 1 3 8 8 H 1.08999 * 110.48911 * 119.74003 * 7 2 1 9 9 C 1.50694 * 110.49013 * 357.21955 * 7 2 1 10 10 O 1.21286 * 120.00463 * 273.08387 * 9 7 2 11 11 N 1.34773 * 119.99981 * 93.35577 * 9 7 2 12 12 C 1.39132 * 120.00480 * 184.32993 * 11 9 7 13 13 C 1.38643 * 120.27941 * 331.32110 * 12 11 9 14 14 C 1.38227 * 120.02738 * 179.73960 * 13 12 11 15 15 C 1.38868 * 120.61680 * 0.55790 * 14 13 12 16 16 C 1.36458 * 120.57663 * 359.69610 * 15 14 13 17 17 C 1.40736 * 119.94442 * 0.02562 * 16 15 14 18 18 C 1.41074 * 120.30227 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99993 * 149.00288 * 18 17 16 20 20 C 1.39962 * 119.99688 * 329.00133 * 18 17 16 21 21 N 1.30855 * 120.00237 * 348.31552 * 20 18 17 22 22 Si 1.86798 * 120.00096 * 168.31680 * 20 18 17 23 23 H 1.48496 * 109.47134 * 89.99718 * 22 20 18 24 24 H 1.48501 * 109.47278 * 210.00112 * 22 20 18 25 25 H 1.48504 * 109.46782 * 329.99878 * 22 20 18 26 26 H 1.09006 * 109.46824 * 182.72041 * 1 2 3 27 27 H 1.08990 * 109.47118 * 302.72024 * 1 2 3 28 28 H 1.08994 * 109.46752 * 62.72518 * 1 2 3 29 29 H 1.09003 * 110.61243 * 78.44731 * 5 4 2 30 30 H 1.08998 * 110.61839 * 201.27863 * 5 4 2 31 31 H 1.09001 * 110.90815 * 278.82184 * 6 5 4 32 32 H 1.09001 * 110.90545 * 155.21767 * 6 5 4 33 33 H 0.97006 * 120.00031 * 4.33448 * 11 9 7 34 34 H 1.07993 * 119.98645 * 0.02562 * 13 12 11 35 35 H 1.08004 * 119.68785 * 180.24866 * 14 13 12 36 36 H 1.07998 * 119.71155 * 179.71856 * 15 14 13 37 37 H 1.07998 * 120.03060 * 180.02562 * 16 15 14 38 38 H 0.96989 * 120.00034 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0189 -0.6994 1.1568 5 6 3.2380 -1.3652 0.7629 6 6 2.9196 -1.8906 -0.6601 7 6 2.0540 -0.7466 -1.2421 8 1 2.6601 -0.0828 -1.8587 9 6 0.9074 -1.3078 -2.0429 10 8 0.4572 -2.4012 -1.7733 11 7 0.3858 -0.5969 -3.0622 12 6 -0.7296 -1.0736 -3.7438 13 6 -0.9634 -2.4372 -3.8344 14 6 -2.0761 -2.9048 -4.5082 15 6 -2.9624 -2.0207 -5.1092 16 6 -2.7536 -0.6740 -5.0398 17 6 -1.6316 -0.1714 -4.3549 18 6 -1.4087 1.2195 -4.2781 19 1 -0.9139 1.6402 -3.4152 20 6 -1.8288 2.0541 -5.3201 21 7 -2.2169 1.5362 -6.4574 22 14 -1.8357 3.9075 -5.0874 23 1 -0.5231 4.4635 -5.5036 24 1 -2.9124 4.5066 -5.9163 25 1 -2.0770 4.2259 -3.6571 26 1 -0.3633 -1.0266 0.0488 27 1 -0.3633 0.5554 0.8645 28 1 -0.3632 0.4709 -0.9134 29 1 4.0685 -0.6598 0.7348 30 1 3.4600 -2.1909 1.4388 31 1 2.3540 -2.8212 -0.6136 32 1 3.8332 -2.0207 -1.2401 33 1 0.7880 0.2471 -3.3208 34 1 -0.2785 -3.1340 -3.3745 35 1 -2.2551 -3.9680 -4.5720 36 1 -3.8246 -2.4023 -5.6358 37 1 -3.4488 0.0057 -5.5101 38 1 -2.5076 2.1146 -7.1796 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334590067.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:05 Heat of formation + Delta-G solvation = -81.016207 kcal Electronic energy + Delta-G solvation = -21594.590538 eV Core-core repulsion = 18400.770549 eV Total energy + Delta-G solvation = -3193.819989 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.83873 -40.04902 -38.67161 -35.48814 -35.47372 -33.55884 -32.43700 -31.50146 -30.22054 -27.48815 -26.92370 -24.19580 -23.14277 -23.02930 -21.92916 -20.53035 -19.20296 -18.23804 -18.08751 -17.37226 -16.92846 -16.68758 -16.21127 -15.97537 -15.80825 -15.04969 -14.75456 -14.45122 -14.25815 -13.85338 -13.55938 -13.39149 -13.32220 -13.14558 -12.96531 -12.82121 -12.69635 -12.22271 -12.15765 -12.00013 -11.93917 -11.79813 -11.54754 -11.06834 -11.00027 -10.71577 -10.32357 -9.28920 -8.80446 -8.48946 -6.30607 0.84385 1.06236 1.43365 1.52021 1.56703 1.79506 2.23143 2.37924 2.80113 2.88006 3.43794 3.64790 3.72620 3.90131 4.09916 4.24161 4.29859 4.35749 4.52642 4.55692 4.61295 4.63958 4.77143 4.85633 4.93910 4.94790 5.08881 5.16870 5.19523 5.23950 5.31216 5.46011 5.80583 5.84178 5.92232 6.13596 6.18542 6.26859 6.65935 6.76273 6.96513 7.02918 7.41159 8.39948 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.017785 B = 0.006208 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.965396 B = 4509.323582 C = 5682.008596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.096 3.904 3 H 0.108 0.892 4 O -0.395 6.395 5 C 0.049 3.951 6 C -0.141 4.141 7 C -0.139 4.139 8 H 0.135 0.865 9 C 0.513 3.487 10 O -0.570 6.570 11 N -0.634 5.634 12 C 0.017 3.983 13 C -0.114 4.114 14 C -0.227 4.227 15 C -0.122 4.122 16 C -0.168 4.168 17 C 0.075 3.925 18 C -0.490 4.490 19 H 0.085 0.915 20 C 0.038 3.962 21 N -0.832 5.832 22 Si 0.979 3.021 23 H -0.259 1.259 24 H -0.276 1.276 25 H -0.259 1.259 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.413 0.587 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.392 2.096 7.790 13.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.125 0.875 4 O -0.315 6.315 5 C -0.027 4.027 6 C -0.179 4.179 7 C -0.160 4.160 8 H 0.153 0.847 9 C 0.302 3.698 10 O -0.450 6.450 11 N -0.276 5.276 12 C -0.077 4.077 13 C -0.134 4.134 14 C -0.247 4.247 15 C -0.141 4.141 16 C -0.188 4.188 17 C 0.071 3.929 18 C -0.520 4.520 19 H 0.103 0.897 20 C -0.177 4.177 21 N -0.458 5.458 22 Si 0.801 3.199 23 H -0.184 1.184 24 H -0.201 1.201 25 H -0.182 1.182 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.086 0.914 32 H 0.128 0.872 33 H 0.250 0.750 34 H 0.136 0.864 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.930 1.415 7.976 12.815 hybrid contribution -0.352 0.819 -0.749 1.164 sum 9.577 2.234 7.227 12.204 Atomic orbital electron populations 1.22076 0.95219 1.01896 1.02896 1.22626 0.94155 0.96350 0.83050 0.87484 1.88872 1.41263 1.68145 1.33186 1.23756 0.87220 0.97260 0.94483 1.23164 1.00079 0.97424 0.97214 1.22901 0.95284 1.00211 0.97634 0.84689 1.20829 0.84642 0.84926 0.79402 1.90581 1.62929 1.22216 1.69272 1.42993 1.28279 1.24821 1.31484 1.17932 0.91231 0.92202 1.06379 1.21068 0.98733 0.94174 0.99457 1.20654 0.98698 0.98512 1.06808 1.20705 0.99353 0.93839 1.00198 1.20885 0.98579 0.94347 1.04966 1.17724 0.89573 0.93510 0.92101 1.19519 1.36422 0.91375 1.04652 0.89689 1.26679 0.91768 1.05667 0.93565 1.69873 1.32802 1.39650 1.03468 0.85232 0.79053 0.76184 0.79456 1.18354 1.20053 1.18245 0.94212 0.90683 0.91526 0.89129 0.87669 0.91415 0.87178 0.75021 0.86449 0.87024 0.87231 0.87863 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.15 8.41 71.98 0.61 -4.54 16 2 C 0.10 2.45 4.05 30.97 0.13 2.58 16 3 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 4 O -0.39 -10.58 11.19 -148.98 -1.67 -12.24 16 5 C 0.05 0.92 7.72 72.66 0.56 1.48 16 6 C -0.14 -3.14 6.65 31.89 0.21 -2.92 16 7 C -0.14 -3.51 3.44 -10.55 -0.04 -3.55 16 8 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 9 C 0.51 18.58 4.65 87.66 0.41 18.99 16 10 O -0.57 -24.97 12.09 -3.05 -0.04 -25.01 16 11 N -0.63 -24.85 4.52 -302.29 -1.36 -26.22 16 12 C 0.02 0.84 6.44 38.87 0.25 1.09 16 13 C -0.11 -5.57 8.75 22.36 0.20 -5.37 16 14 C -0.23 -10.67 10.04 22.42 0.23 -10.45 16 15 C -0.12 -5.86 9.97 22.00 0.22 -5.64 16 16 C -0.17 -8.77 8.59 22.46 0.19 -8.58 16 17 C 0.07 3.86 5.53 -21.18 -0.12 3.74 16 18 C -0.49 -23.95 8.27 23.38 0.19 -23.75 16 19 H 0.09 3.84 7.39 -2.91 -0.02 3.81 16 20 C 0.04 1.77 5.22 85.26 0.44 2.21 16 21 N -0.83 -41.62 11.05 21.83 0.24 -41.38 16 22 Si 0.98 35.56 29.58 68.60 2.03 37.59 16 23 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 24 H -0.28 -9.89 7.11 99.48 0.71 -9.19 16 25 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 26 H 0.04 1.50 7.05 -2.38 -0.02 1.48 16 27 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.07 2.25 7.11 -2.39 -0.02 2.23 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.07 1.95 6.89 -2.39 -0.02 1.93 16 32 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.41 14.31 7.78 -92.70 -0.72 13.59 16 34 H 0.12 5.71 5.73 -2.91 -0.02 5.70 16 35 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 36 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 37 H 0.10 5.59 6.43 -2.91 -0.02 5.57 16 38 H 0.29 13.08 8.30 -92.72 -0.77 12.31 16 Total: -1.00 -63.75 309.10 3.04 -60.70 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: 0.36 Total: 41.26 kcal Atomic # 6 Polarization: -38.18 SS G_CDS: 3.48 Total: -34.70 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: -1.12 Total: -67.60 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -1.70 Total: -37.25 kcal Atomic # 14 Polarization: 35.56 SS G_CDS: 2.03 Total: 37.59 kcal Total: -63.75 3.04 -60.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334590067.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.312 kcal (2) G-P(sol) polarization free energy of solvation -63.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds