Wall clock time and date at job start Mon Mar 30 2020 02:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.27425 * 2 1 4 4 C 1.54950 * 110.39399 * 237.85209 * 2 1 3 5 5 C 1.55297 * 100.94380 * 204.59999 * 4 2 1 6 6 H 1.09004 * 111.02307 * 275.86418 * 5 4 2 7 7 C 1.50696 * 110.85413 * 152.32469 * 5 4 2 8 8 O 1.21289 * 119.99672 * 5.71206 * 7 5 4 9 9 N 1.34770 * 120.00665 * 185.71214 * 7 5 4 10 10 C 1.39125 * 120.00299 * 182.66185 * 9 7 5 11 11 C 1.38646 * 120.28688 * 331.16162 * 10 9 7 12 12 C 1.38219 * 120.03142 * 180.29715 * 11 10 9 13 13 C 1.38867 * 120.61813 * 359.43603 * 12 11 10 14 14 C 1.36463 * 120.57308 * 0.56576 * 13 12 11 15 15 C 1.40728 * 119.94686 * 359.71979 * 14 13 12 16 16 C 1.41069 * 120.30111 * 179.97438 * 15 14 13 17 17 H 1.08006 * 120.00224 * 157.84058 * 16 15 14 18 18 C 1.39953 * 120.00069 * 337.83839 * 16 15 14 19 19 N 1.30849 * 120.00235 * 327.86596 * 18 16 15 20 20 Si 1.86801 * 120.00072 * 147.86322 * 18 16 15 21 21 H 1.48507 * 109.46869 * 94.98691 * 20 18 16 22 22 H 1.48495 * 109.47427 * 214.98639 * 20 18 16 23 23 H 1.48500 * 109.47138 * 334.98983 * 20 18 16 24 24 C 1.54388 * 102.25446 * 34.12969 * 5 4 2 25 25 O 1.43237 * 107.58705 * 338.64703 * 24 5 4 26 26 H 1.09002 * 109.47413 * 299.36291 * 1 2 3 27 27 H 1.09003 * 109.47399 * 59.36310 * 1 2 3 28 28 H 1.09007 * 109.47238 * 179.36449 * 1 2 3 29 29 H 1.08997 * 111.12664 * 86.67405 * 4 2 1 30 30 H 1.09004 * 111.12417 * 322.52000 * 4 2 1 31 31 H 0.97006 * 119.99941 * 2.66802 * 9 7 5 32 32 H 1.08000 * 119.97691 * 0.02562 * 11 10 9 33 33 H 1.08001 * 119.68617 * 179.70302 * 12 11 10 34 34 H 1.08000 * 119.71024 * 180.28651 * 13 12 11 35 35 H 1.08004 * 120.02557 * 179.74551 * 14 13 12 36 36 H 0.97003 * 120.00689 * 179.97438 * 19 18 16 37 37 H 1.08998 * 109.82739 * 98.16116 * 24 5 4 38 38 H 1.08999 * 109.82986 * 219.13008 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0699 -0.7728 -1.2297 5 6 3.4721 -1.2002 -0.7169 6 1 4.2014 -0.4032 -0.8625 7 6 3.9262 -2.4690 -1.3913 8 8 3.2639 -2.9507 -2.2860 9 7 5.0681 -3.0686 -1.0005 10 6 5.5161 -4.2089 -1.6597 11 6 4.6110 -5.0696 -2.2617 12 6 5.0614 -6.2042 -2.9099 13 6 6.4189 -6.4889 -2.9764 14 6 7.3316 -5.6591 -2.3927 15 6 6.8991 -4.5004 -1.7214 16 6 7.8360 -3.6376 -1.1149 17 1 7.5755 -2.6073 -0.9219 18 6 9.1030 -4.1167 -0.7631 19 7 9.2517 -5.3626 -0.3921 20 14 10.5822 -2.9774 -0.8231 21 1 10.8165 -2.3990 0.5244 22 1 11.7808 -3.7442 -1.2479 23 1 10.3251 -1.8831 -1.7935 24 6 3.2125 -1.4394 0.7861 25 8 2.0285 -0.7157 1.1413 26 1 -0.3634 0.5039 0.8956 27 1 -0.3634 0.5237 -0.8842 28 1 -0.3634 -1.0277 -0.0114 29 1 2.1516 -0.1203 -2.0990 30 1 1.4505 -1.6422 -1.4503 31 1 5.5777 -2.7051 -0.2594 32 1 3.5532 -4.8555 -2.2201 33 1 4.3511 -6.8733 -3.3728 34 1 6.7550 -7.3772 -3.4907 35 1 8.3850 -5.8912 -2.4463 36 1 10.1299 -5.6949 -0.1487 37 1 3.0650 -2.5034 0.9710 38 1 4.0578 -1.0751 1.3699 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335133750.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:40 Heat of formation + Delta-G solvation = -69.432425 kcal Electronic energy + Delta-G solvation = -21059.740541 eV Core-core repulsion = 17866.422862 eV Total energy + Delta-G solvation = -3193.317679 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.29136 -38.78467 -37.08415 -33.85869 -33.77878 -32.35809 -31.79675 -29.76368 -28.37433 -26.11297 -25.27499 -23.40044 -21.53756 -21.21263 -20.48445 -19.16436 -17.47943 -17.21935 -16.75133 -16.05401 -15.50318 -15.16494 -14.67484 -14.52949 -14.13394 -13.61319 -13.49056 -13.08586 -12.81115 -12.58303 -12.46086 -12.25370 -11.87755 -11.80333 -11.44750 -11.29651 -11.20415 -11.07966 -10.98450 -10.90693 -10.57699 -10.17125 -9.83956 -9.59842 -9.33523 -9.09158 -8.76703 -7.55310 -7.13509 -6.82871 -4.40066 2.56746 2.78937 2.99187 3.02535 3.19504 3.35349 3.65702 3.80699 3.90015 4.34849 4.45347 4.76662 4.92277 5.03255 5.10255 5.22256 5.40745 5.56342 5.60187 5.66712 5.69266 5.83159 5.92212 6.02116 6.19041 6.31991 6.47384 6.58404 6.85391 6.94039 6.99133 7.08791 7.26103 7.56332 7.64194 7.89732 8.06474 8.08109 8.36201 8.47283 8.72221 8.77824 8.99141 9.94443 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.019456 B = 0.005096 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.831721 B = 5493.204215 C = 6581.606581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.074 3.926 3 H 0.071 0.929 4 C -0.128 4.128 5 C -0.146 4.146 6 H 0.109 0.891 7 C 0.506 3.494 8 O -0.537 6.537 9 N -0.631 5.631 10 C 0.001 3.999 11 C -0.084 4.084 12 C -0.237 4.237 13 C -0.104 4.104 14 C -0.168 4.168 15 C 0.109 3.891 16 C -0.476 4.476 17 H 0.078 0.922 18 C 0.091 3.909 19 N -0.766 5.766 20 Si 0.895 3.105 21 H -0.269 1.269 22 H -0.273 1.273 23 H -0.258 1.258 24 C 0.063 3.937 25 O -0.379 6.379 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.403 0.597 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.284 0.716 37 H 0.075 0.925 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.043 8.764 2.206 11.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.016 3.984 3 H 0.089 0.911 4 C -0.166 4.166 5 C -0.167 4.167 6 H 0.127 0.873 7 C 0.292 3.708 8 O -0.415 6.415 9 N -0.272 5.272 10 C -0.092 4.092 11 C -0.104 4.104 12 C -0.257 4.257 13 C -0.123 4.123 14 C -0.188 4.188 15 C 0.105 3.895 16 C -0.504 4.504 17 H 0.096 0.904 18 C -0.131 4.131 19 N -0.389 5.389 20 Si 0.718 3.282 21 H -0.195 1.195 22 H -0.198 1.198 23 H -0.182 1.182 24 C -0.014 4.014 25 O -0.299 6.299 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.238 0.762 32 H 0.134 0.866 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.125 0.875 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.442 8.266 1.895 11.283 hybrid contribution 1.366 0.569 0.143 1.486 sum -6.077 8.835 2.038 10.915 Atomic orbital electron populations 1.21876 0.93661 1.03005 1.02210 1.23011 0.95004 0.95464 0.84872 0.91150 1.23184 0.94168 1.01402 0.97878 1.22896 0.99758 0.97768 0.96327 0.87284 1.20066 0.81925 0.85079 0.83737 1.90621 1.54807 1.65062 1.31015 1.42895 1.23481 1.26958 1.33855 1.17646 0.92603 0.90750 1.08228 1.20809 0.98466 0.93063 0.98042 1.20259 0.94834 1.00143 1.10482 1.20413 0.93601 0.98312 0.99966 1.20614 0.98288 0.97358 1.02542 1.17316 0.88922 0.92540 0.90704 1.19238 0.97027 0.97583 1.36572 0.90359 1.25865 1.00562 0.95193 0.91490 1.69924 1.25850 1.16580 1.26524 0.86528 0.80468 0.81560 0.79638 1.19450 1.19832 1.18195 1.23084 0.88270 0.97488 0.92606 1.88404 1.42438 1.64982 1.34048 0.91969 0.91204 0.91768 0.89590 0.88842 0.76155 0.86585 0.89264 0.89471 0.87500 0.90479 0.90647 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.62 37.16 0.36 -1.08 16 2 C 0.07 0.83 4.07 -25.70 -0.10 0.73 16 3 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.13 -1.62 5.65 -24.48 -0.14 -1.76 16 5 C -0.15 -2.01 3.39 -89.83 -0.30 -2.31 16 6 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 7 C 0.51 9.39 6.88 -10.99 -0.08 9.32 16 8 O -0.54 -11.69 12.88 5.55 0.07 -11.62 16 9 N -0.63 -12.65 4.97 -9.48 -0.05 -12.70 16 10 C 0.00 0.03 6.43 -83.17 -0.53 -0.51 16 11 C -0.08 -2.03 8.73 -39.44 -0.34 -2.38 16 12 C -0.24 -5.59 10.04 -39.36 -0.39 -5.98 16 13 C -0.10 -2.47 9.97 -39.99 -0.40 -2.87 16 14 C -0.17 -4.28 8.74 -39.28 -0.34 -4.62 16 15 C 0.11 2.78 5.58 -106.65 -0.60 2.19 16 16 C -0.48 -11.64 8.36 -37.87 -0.32 -11.96 16 17 H 0.08 1.79 7.20 -52.48 -0.38 1.42 16 18 C 0.09 2.13 4.78 -17.33 -0.08 2.05 16 19 N -0.77 -18.61 11.78 55.55 0.65 -17.96 16 20 Si 0.89 17.35 29.66 -169.99 -5.04 12.31 16 21 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 22 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 23 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 24 C 0.06 0.82 7.31 37.88 0.28 1.10 16 25 O -0.38 -5.18 11.04 -35.23 -0.39 -5.57 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.09 1.34 7.39 -51.93 -0.38 0.96 16 31 H 0.40 7.25 7.58 -40.82 -0.31 6.95 16 32 H 0.12 2.79 5.81 -52.49 -0.30 2.49 16 33 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 34 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 35 H 0.11 2.75 6.53 -52.48 -0.34 2.40 16 36 H 0.28 6.24 8.30 -40.82 -0.34 5.91 16 37 H 0.08 1.07 7.81 -51.93 -0.41 0.66 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 314.92 15.07 4.75 4.75 Total: -1.00 -28.73 314.92 -8.07 -36.80 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -5.06 Total: 12.08 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -3.00 Total: -18.09 kcal Atomic # 7 Polarization: -31.27 SS G_CDS: 0.61 Total: -30.66 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.32 Total: -17.18 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.04 Total: 12.31 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.73 -8.07 -36.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335133750.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.637 kcal (2) G-P(sol) polarization free energy of solvation -28.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds