Wall clock time and date at job start Mon Mar 30 2020 02:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.27425 * 2 1 4 4 C 1.54950 * 110.39399 * 237.85209 * 2 1 3 5 5 C 1.55297 * 100.94380 * 204.59999 * 4 2 1 6 6 H 1.09004 * 111.02307 * 275.86418 * 5 4 2 7 7 C 1.50696 * 110.85413 * 152.32469 * 5 4 2 8 8 O 1.21289 * 119.99672 * 5.71206 * 7 5 4 9 9 N 1.34770 * 120.00665 * 185.71214 * 7 5 4 10 10 C 1.39125 * 120.00299 * 182.66185 * 9 7 5 11 11 C 1.38646 * 120.28688 * 331.16162 * 10 9 7 12 12 C 1.38219 * 120.03142 * 180.29715 * 11 10 9 13 13 C 1.38867 * 120.61813 * 359.43603 * 12 11 10 14 14 C 1.36463 * 120.57308 * 0.56576 * 13 12 11 15 15 C 1.40728 * 119.94686 * 359.71979 * 14 13 12 16 16 C 1.41069 * 120.30111 * 179.97438 * 15 14 13 17 17 H 1.08006 * 120.00224 * 157.84058 * 16 15 14 18 18 C 1.39953 * 120.00069 * 337.83839 * 16 15 14 19 19 N 1.30849 * 120.00235 * 327.86596 * 18 16 15 20 20 Si 1.86801 * 120.00072 * 147.86322 * 18 16 15 21 21 H 1.48507 * 109.46869 * 94.98691 * 20 18 16 22 22 H 1.48495 * 109.47427 * 214.98639 * 20 18 16 23 23 H 1.48500 * 109.47138 * 334.98983 * 20 18 16 24 24 C 1.54388 * 102.25446 * 34.12969 * 5 4 2 25 25 O 1.43237 * 107.58705 * 338.64703 * 24 5 4 26 26 H 1.09002 * 109.47413 * 299.36291 * 1 2 3 27 27 H 1.09003 * 109.47399 * 59.36310 * 1 2 3 28 28 H 1.09007 * 109.47238 * 179.36449 * 1 2 3 29 29 H 1.08997 * 111.12664 * 86.67405 * 4 2 1 30 30 H 1.09004 * 111.12417 * 322.52000 * 4 2 1 31 31 H 0.97006 * 119.99941 * 2.66802 * 9 7 5 32 32 H 1.08000 * 119.97691 * 0.02562 * 11 10 9 33 33 H 1.08001 * 119.68617 * 179.70302 * 12 11 10 34 34 H 1.08000 * 119.71024 * 180.28651 * 13 12 11 35 35 H 1.08004 * 120.02557 * 179.74551 * 14 13 12 36 36 H 0.97003 * 120.00689 * 179.97438 * 19 18 16 37 37 H 1.08998 * 109.82739 * 98.16116 * 24 5 4 38 38 H 1.08999 * 109.82986 * 219.13008 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0699 -0.7728 -1.2297 5 6 3.4721 -1.2002 -0.7169 6 1 4.2014 -0.4032 -0.8625 7 6 3.9262 -2.4690 -1.3913 8 8 3.2639 -2.9507 -2.2860 9 7 5.0681 -3.0686 -1.0005 10 6 5.5161 -4.2089 -1.6597 11 6 4.6110 -5.0696 -2.2617 12 6 5.0614 -6.2042 -2.9099 13 6 6.4189 -6.4889 -2.9764 14 6 7.3316 -5.6591 -2.3927 15 6 6.8991 -4.5004 -1.7214 16 6 7.8360 -3.6376 -1.1149 17 1 7.5755 -2.6073 -0.9219 18 6 9.1030 -4.1167 -0.7631 19 7 9.2517 -5.3626 -0.3921 20 14 10.5822 -2.9774 -0.8231 21 1 10.8165 -2.3990 0.5244 22 1 11.7808 -3.7442 -1.2479 23 1 10.3251 -1.8831 -1.7935 24 6 3.2125 -1.4394 0.7861 25 8 2.0285 -0.7157 1.1413 26 1 -0.3634 0.5039 0.8956 27 1 -0.3634 0.5237 -0.8842 28 1 -0.3634 -1.0277 -0.0114 29 1 2.1516 -0.1203 -2.0990 30 1 1.4505 -1.6422 -1.4503 31 1 5.5777 -2.7051 -0.2594 32 1 3.5532 -4.8555 -2.2201 33 1 4.3511 -6.8733 -3.3728 34 1 6.7550 -7.3772 -3.4907 35 1 8.3850 -5.8912 -2.4463 36 1 10.1299 -5.6949 -0.1487 37 1 3.0650 -2.5034 0.9710 38 1 4.0578 -1.0751 1.3699 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335133750.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:40 Heat of formation + Delta-G solvation = -86.134618 kcal Electronic energy + Delta-G solvation = -21060.464802 eV Core-core repulsion = 17866.422862 eV Total energy + Delta-G solvation = -3194.041940 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.65247 -40.12743 -38.77584 -35.60860 -35.50997 -33.43421 -32.80360 -31.61793 -30.10518 -27.27514 -26.88069 -24.77744 -23.27416 -22.26539 -22.06154 -20.70710 -19.25980 -18.52654 -18.09202 -17.58270 -17.00470 -16.51019 -16.08296 -15.92647 -15.62889 -14.88732 -14.83680 -14.62872 -14.44804 -14.13697 -13.60284 -13.43104 -13.35803 -13.24281 -12.96645 -12.82402 -12.66142 -12.27160 -12.17596 -12.06421 -11.93623 -11.80822 -11.63189 -11.10048 -10.86455 -10.59029 -10.38284 -9.45241 -8.93818 -8.62641 -6.26269 0.83651 1.02973 1.40588 1.49435 1.58923 1.76802 2.18403 2.32273 2.65691 2.80403 3.26881 3.69080 3.74622 3.85123 4.00155 4.16168 4.23405 4.46088 4.51875 4.58420 4.65846 4.67943 4.78975 4.81976 4.88919 4.99405 5.05361 5.17392 5.21772 5.23961 5.31477 5.44543 5.73969 5.80238 5.99084 6.09654 6.18255 6.24014 6.61801 6.67766 6.90195 7.00558 7.36454 8.20721 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.019456 B = 0.005096 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.831721 B = 5493.204215 C = 6581.606581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.073 3.927 3 H 0.095 0.905 4 C -0.128 4.128 5 C -0.136 4.136 6 H 0.138 0.862 7 C 0.505 3.495 8 O -0.571 6.571 9 N -0.631 5.631 10 C -0.006 4.006 11 C -0.100 4.100 12 C -0.246 4.246 13 C -0.109 4.109 14 C -0.193 4.193 15 C 0.083 3.917 16 C -0.496 4.496 17 H 0.088 0.912 18 C 0.055 3.945 19 N -0.797 5.797 20 Si 0.970 3.030 21 H -0.257 1.257 22 H -0.270 1.270 23 H -0.260 1.260 24 C 0.066 3.934 25 O -0.394 6.394 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.049 0.951 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.412 0.588 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.293 0.707 37 H 0.057 0.943 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.648 10.870 2.689 13.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.017 3.983 3 H 0.112 0.888 4 C -0.166 4.166 5 C -0.158 4.158 6 H 0.155 0.845 7 C 0.294 3.706 8 O -0.451 6.451 9 N -0.273 5.273 10 C -0.101 4.101 11 C -0.120 4.120 12 C -0.266 4.266 13 C -0.127 4.127 14 C -0.213 4.213 15 C 0.079 3.921 16 C -0.524 4.524 17 H 0.106 0.894 18 C -0.165 4.165 19 N -0.420 5.420 20 Si 0.790 3.210 21 H -0.181 1.181 22 H -0.195 1.195 23 H -0.184 1.184 24 C -0.011 4.011 25 O -0.314 6.314 26 H 0.088 0.912 27 H 0.108 0.892 28 H 0.069 0.931 29 H 0.120 0.880 30 H 0.088 0.912 31 H 0.249 0.751 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.062 10.383 2.399 12.784 hybrid contribution 1.173 -0.118 -0.004 1.179 sum -5.889 10.265 2.395 12.074 Atomic orbital electron populations 1.21905 0.92580 1.02593 1.03606 1.23213 0.95959 0.95958 0.83189 0.88751 1.23203 0.92998 1.01062 0.99305 1.22918 1.00981 0.95515 0.96358 0.84457 1.20899 0.80650 0.85957 0.83119 1.90598 1.55538 1.66318 1.32659 1.42916 1.24173 1.26196 1.33984 1.17819 0.92354 0.91891 1.08015 1.20967 0.98451 0.93735 0.98854 1.20543 0.95291 1.00331 1.10404 1.20652 0.93525 0.98844 0.99707 1.20677 0.98108 0.98496 1.04042 1.17656 0.89879 0.93113 0.91486 1.19520 0.97918 0.97921 1.37012 0.89382 1.26685 1.02842 0.96572 0.90433 1.69946 1.27078 1.18262 1.26744 0.85391 0.76533 0.79131 0.79948 1.18097 1.19484 1.18394 1.23062 0.89034 0.96774 0.92257 1.88397 1.42605 1.65300 1.35147 0.91175 0.89201 0.93133 0.87965 0.91165 0.75100 0.86876 0.87165 0.87148 0.88557 0.89588 0.92478 0.88182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.62 71.98 0.69 -1.87 16 2 C 0.07 1.47 4.07 31.26 0.13 1.60 16 3 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 4 C -0.13 -3.01 5.65 32.05 0.18 -2.83 16 5 C -0.14 -3.52 3.39 -10.28 -0.03 -3.56 16 6 H 0.14 2.82 8.14 -2.39 -0.02 2.80 16 7 C 0.51 18.64 6.88 87.66 0.60 19.24 16 8 O -0.57 -25.17 12.88 -3.06 -0.04 -25.21 16 9 N -0.63 -25.34 4.97 -302.28 -1.50 -26.84 16 10 C -0.01 -0.31 6.43 38.88 0.25 -0.06 16 11 C -0.10 -4.94 8.73 22.36 0.20 -4.74 16 12 C -0.25 -11.67 10.04 22.42 0.22 -11.44 16 13 C -0.11 -5.20 9.97 22.01 0.22 -4.98 16 14 C -0.19 -10.04 8.74 22.46 0.20 -9.85 16 15 C 0.08 4.29 5.58 -21.18 -0.12 4.17 16 16 C -0.50 -24.27 8.36 23.38 0.20 -24.07 16 17 H 0.09 3.98 7.20 -2.91 -0.02 3.96 16 18 C 0.06 2.54 4.78 85.25 0.41 2.95 16 19 N -0.80 -38.81 11.78 21.83 0.26 -38.55 16 20 Si 0.97 34.79 29.66 68.60 2.03 36.82 16 21 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 22 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 23 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 24 C 0.07 1.62 7.31 72.45 0.53 2.15 16 25 O -0.39 -10.02 11.04 -148.98 -1.64 -11.66 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.07 2.00 7.39 -2.39 -0.02 1.98 16 31 H 0.41 14.68 7.58 -92.70 -0.70 13.97 16 32 H 0.11 5.59 5.81 -2.91 -0.02 5.57 16 33 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 34 H 0.11 4.62 8.06 -2.91 -0.02 4.59 16 35 H 0.10 5.09 6.53 -2.91 -0.02 5.07 16 36 H 0.29 12.81 8.30 -92.71 -0.77 12.04 16 37 H 0.06 1.61 7.81 -2.39 -0.02 1.59 16 38 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -62.35 314.92 3.15 -59.21 By element: Atomic # 1 Polarization: 39.15 SS G_CDS: 0.37 Total: 39.53 kcal Atomic # 6 Polarization: -36.96 SS G_CDS: 3.67 Total: -33.29 kcal Atomic # 7 Polarization: -64.15 SS G_CDS: -1.25 Total: -65.39 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -1.68 Total: -36.87 kcal Atomic # 14 Polarization: 34.79 SS G_CDS: 2.03 Total: 36.82 kcal Total: -62.35 3.15 -59.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335133750.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.928 kcal (2) G-P(sol) polarization free energy of solvation -62.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds