Wall clock time and date at job start Mon Mar 30 2020 02:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 110.33097 * 2 1 4 4 C 1.54480 * 110.46736 * 122.31181 * 2 1 3 5 5 C 1.54510 * 104.06138 * 142.85851 * 4 2 1 6 6 H 1.09002 * 110.50896 * 241.35508 * 5 4 2 7 7 N 1.46503 * 110.62854 * 118.70382 * 5 4 2 8 8 C 1.34775 * 120.00292 * 158.83125 * 7 5 4 9 9 O 1.21592 * 119.99694 * 0.02562 * 8 7 5 10 10 C 1.47638 * 120.00310 * 180.02562 * 8 7 5 11 11 C 1.40016 * 119.89265 * 359.72739 * 10 8 7 12 12 C 1.36316 * 120.10264 * 179.71572 * 11 10 8 13 13 C 1.40889 * 119.89440 * 0.58218 * 12 11 10 14 14 C 1.41107 * 120.10446 * 179.67346 * 13 12 11 15 15 H 1.08002 * 120.00015 * 155.08677 * 14 13 12 16 16 C 1.40228 * 120.00189 * 335.08018 * 14 13 12 17 17 N 1.30647 * 119.99913 * 342.20913 * 16 14 13 18 18 Si 1.86793 * 120.00016 * 162.20515 * 16 14 13 19 19 H 1.48499 * 109.47314 * 94.66645 * 18 16 14 20 20 H 1.48500 * 109.47204 * 214.66343 * 18 16 14 21 21 H 1.48503 * 109.47417 * 334.66252 * 18 16 14 22 22 C 1.40888 * 119.79056 * 359.69599 * 13 12 11 23 23 C 1.36312 * 119.89452 * 359.97438 * 22 13 12 24 24 C 1.54476 * 104.06546 * 0.02562 * 5 4 2 25 25 O 1.44424 * 104.80107 * 336.01916 * 24 5 4 26 26 H 1.09007 * 109.47129 * 179.30106 * 1 2 3 27 27 H 1.09000 * 109.47165 * 299.29735 * 1 2 3 28 28 H 1.09000 * 109.47343 * 59.29959 * 1 2 3 29 29 H 1.09001 * 110.51308 * 261.49993 * 4 2 1 30 30 H 1.09002 * 110.51219 * 24.21318 * 4 2 1 31 31 H 0.97000 * 119.99608 * 338.83439 * 7 5 4 32 32 H 1.08000 * 119.94522 * 0.02562 * 11 10 8 33 33 H 1.08005 * 120.05342 * 180.25004 * 12 11 10 34 34 H 0.96998 * 119.99894 * 179.97438 * 17 16 14 35 35 H 1.08004 * 120.05198 * 179.97438 * 22 13 12 36 36 H 1.08002 * 119.94871 * 180.02562 * 23 22 13 37 37 H 1.09000 * 110.37109 * 217.19369 * 24 5 4 38 38 H 1.09001 * 110.46841 * 94.90194 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0701 -0.7736 1.2232 5 6 3.3207 -1.5031 0.6836 6 1 3.2002 -2.5829 0.7706 7 7 4.5226 -1.0630 1.3963 8 6 5.6245 -1.8390 1.4027 9 8 5.6212 -2.9043 0.8165 10 6 6.8356 -1.3957 2.1214 11 6 6.8388 -0.1660 2.7909 12 6 7.9527 0.2449 3.4607 13 6 9.1059 -0.5644 3.4683 14 6 10.2637 -0.1403 4.1544 15 1 10.9779 -0.8683 4.5099 16 6 10.4870 1.2265 4.3747 17 7 9.8398 2.1160 3.6700 18 14 11.7099 1.7752 5.6758 19 1 13.0313 2.0165 5.0427 20 1 11.2287 3.0288 6.3100 21 1 11.8418 0.7168 6.7090 22 6 9.0997 -1.7983 2.7883 23 6 7.9789 -2.2039 2.1269 24 6 3.3886 -1.0835 -0.8015 25 8 2.0332 -0.7217 -1.1450 26 1 -0.3634 -1.0277 -0.0125 27 1 -0.3633 0.5029 0.8962 28 1 -0.3634 0.5247 -0.8836 29 1 2.3450 -0.0833 2.0207 30 1 1.3313 -1.4928 1.5769 31 1 4.5253 -0.2130 1.8637 32 1 5.9557 0.4557 2.7808 33 1 7.9530 1.1918 3.9802 34 1 9.9940 3.0614 3.8226 35 1 9.9816 -2.4218 2.7910 36 1 7.9730 -3.1498 1.6056 37 1 3.7260 -1.9177 -1.4165 38 1 4.0528 -0.2282 -0.9260 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335466445.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:57 Heat of formation + Delta-G solvation = -75.789458 kcal Electronic energy + Delta-G solvation = -20471.543637 eV Core-core repulsion = 17277.950297 eV Total energy + Delta-G solvation = -3193.593341 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.00135 -38.62970 -37.07998 -34.25083 -33.91014 -32.20884 -30.75116 -29.51110 -29.21305 -26.14271 -25.77528 -22.61366 -21.60677 -21.14426 -20.66558 -19.76216 -17.57159 -17.02103 -16.58268 -15.64620 -15.57985 -15.34601 -14.89219 -14.13866 -14.05711 -13.81828 -13.35097 -13.17186 -12.87410 -12.64683 -12.33510 -12.14505 -12.09165 -11.93271 -11.59327 -11.39520 -11.28443 -11.22739 -11.00547 -10.80622 -10.66881 -10.10081 -9.87250 -9.60222 -9.38774 -9.03751 -8.68807 -7.76532 -7.58674 -7.07788 -4.64334 2.17942 2.87390 2.92112 2.98261 2.99711 3.53453 3.70591 3.79392 4.00363 4.44367 4.52141 4.60914 4.89003 5.09226 5.11787 5.27775 5.46029 5.48925 5.53344 5.66152 5.78269 5.84431 5.92166 5.95400 5.99511 6.14840 6.27827 6.64261 6.73212 6.78740 6.92719 7.02835 7.09119 7.39346 7.60476 7.73920 7.81892 8.02939 8.16082 8.35640 8.58985 8.71021 9.00134 9.84289 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.031084 B = 0.003548 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.566526 B = 7889.578765 C = 8506.464688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 H 0.069 0.931 4 C -0.158 4.158 5 C 0.119 3.881 6 H 0.098 0.902 7 N -0.734 5.734 8 C 0.572 3.428 9 O -0.573 6.573 10 C -0.286 4.286 11 C -0.062 4.062 12 C -0.178 4.178 13 C 0.129 3.871 14 C -0.442 4.442 15 H 0.085 0.915 16 C 0.074 3.926 17 N -0.771 5.771 18 Si 0.913 3.087 19 H -0.267 1.267 20 H -0.272 1.272 21 H -0.257 1.257 22 C -0.239 4.239 23 C -0.021 4.021 24 C 0.035 3.965 25 O -0.373 6.373 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.398 0.602 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.287 0.713 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.351 1.657 -1.260 11.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.011 3.989 3 H 0.087 0.913 4 C -0.196 4.196 5 C 0.012 3.988 6 H 0.116 0.884 7 N -0.388 5.388 8 C 0.368 3.632 9 O -0.455 6.455 10 C -0.291 4.291 11 C -0.081 4.081 12 C -0.198 4.198 13 C 0.126 3.874 14 C -0.469 4.469 15 H 0.103 0.897 16 C -0.147 4.147 17 N -0.394 5.394 18 Si 0.736 3.264 19 H -0.192 1.192 20 H -0.197 1.197 21 H -0.181 1.181 22 C -0.258 4.258 23 C -0.040 4.040 24 C -0.043 4.043 25 O -0.292 6.292 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.234 0.766 32 H 0.106 0.894 33 H 0.138 0.862 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.503 1.118 -1.925 11.717 hybrid contribution 0.709 0.932 0.895 1.474 sum -10.794 2.050 -1.029 11.035 Atomic orbital electron populations 1.21798 0.93197 1.02929 1.02365 1.22965 0.95274 0.95575 0.85119 0.91295 1.23280 0.97437 1.00260 0.98664 1.22119 0.84661 1.00656 0.91334 0.88426 1.45994 1.12532 1.24171 1.56125 1.18644 0.82811 0.82927 0.78865 1.90639 1.84080 1.23763 1.47027 1.18871 0.94968 1.00105 1.15141 1.20458 0.97055 0.93927 0.96708 1.20970 0.92292 1.01912 1.04577 1.17788 0.92256 0.90381 0.86990 1.19861 1.05284 0.92154 1.29616 0.89673 1.26107 0.96565 0.96673 0.95359 1.69742 1.34798 1.03251 1.31621 0.86206 0.80188 0.79068 0.80897 1.19209 1.19717 1.18064 1.20724 0.97928 1.00560 1.06631 1.20363 0.91750 0.96736 0.95146 1.23912 0.83895 1.00652 0.95854 1.89130 1.27332 1.74644 1.38065 0.91738 0.91160 0.91893 0.89783 0.89640 0.76602 0.89398 0.86231 0.90208 0.88345 0.88084 0.88472 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.53 37.15 0.35 -0.88 16 2 C 0.07 0.73 3.91 -25.96 -0.10 0.63 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.16 -1.69 6.40 -25.16 -0.16 -1.85 16 5 C 0.12 1.67 3.41 -66.36 -0.23 1.45 16 6 H 0.10 1.52 7.67 -51.93 -0.40 1.12 16 7 N -0.73 -11.87 5.07 -53.29 -0.27 -12.14 16 8 C 0.57 11.87 7.76 -12.42 -0.10 11.77 16 9 O -0.57 -13.34 16.03 5.28 0.08 -13.25 16 10 C -0.29 -6.42 5.89 -104.73 -0.62 -7.04 16 11 C -0.06 -1.35 9.47 -39.61 -0.38 -1.72 16 12 C -0.18 -4.28 8.63 -39.27 -0.34 -4.62 16 13 C 0.13 3.24 5.57 -106.80 -0.60 2.65 16 14 C -0.44 -10.83 9.04 -37.75 -0.34 -11.18 16 15 H 0.09 1.99 7.91 -52.49 -0.42 1.58 16 16 C 0.07 1.71 5.13 -17.31 -0.09 1.62 16 17 N -0.77 -18.17 10.97 55.56 0.61 -17.56 16 18 Si 0.91 16.98 29.60 -169.99 -5.03 11.95 16 19 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 20 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 21 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 22 C -0.24 -5.72 9.73 -39.27 -0.38 -6.10 16 23 C -0.02 -0.48 9.52 -39.61 -0.38 -0.86 16 24 C 0.03 0.50 7.35 37.93 0.28 0.78 16 25 O -0.37 -5.11 11.34 -35.23 -0.40 -5.51 16 26 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.80 7.66 -51.93 -0.40 0.40 16 30 H 0.08 0.82 7.88 -51.93 -0.41 0.41 16 31 H 0.40 5.70 6.32 -40.82 -0.26 5.44 16 32 H 0.09 1.59 6.37 -52.49 -0.33 1.26 16 33 H 0.12 2.91 6.17 -52.48 -0.32 2.58 16 34 H 0.29 6.06 8.29 -40.82 -0.34 5.72 16 35 H 0.10 2.20 8.06 -52.48 -0.42 1.77 16 36 H 0.10 2.28 7.63 -52.49 -0.40 1.88 16 37 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.06 0.93 8.06 -51.93 -0.42 0.51 16 LS Contribution 318.42 15.07 4.80 4.80 Total: -1.00 -27.97 318.42 -8.30 -36.28 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -5.03 Total: 10.80 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -3.07 Total: -15.36 kcal Atomic # 7 Polarization: -30.04 SS G_CDS: 0.34 Total: -29.70 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.31 Total: -18.76 kcal Atomic # 14 Polarization: 16.98 SS G_CDS: -5.03 Total: 11.95 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.97 -8.30 -36.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335466445.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.514 kcal (2) G-P(sol) polarization free energy of solvation -27.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds