Wall clock time and date at job start Mon Mar 30 2020 02:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 110.33097 * 2 1 4 4 C 1.54480 * 110.46736 * 122.31181 * 2 1 3 5 5 C 1.54510 * 104.06138 * 142.85851 * 4 2 1 6 6 H 1.09002 * 110.50896 * 241.35508 * 5 4 2 7 7 N 1.46503 * 110.62854 * 118.70382 * 5 4 2 8 8 C 1.34775 * 120.00292 * 158.83125 * 7 5 4 9 9 O 1.21592 * 119.99694 * 0.02562 * 8 7 5 10 10 C 1.47638 * 120.00310 * 180.02562 * 8 7 5 11 11 C 1.40016 * 119.89265 * 359.72739 * 10 8 7 12 12 C 1.36316 * 120.10264 * 179.71572 * 11 10 8 13 13 C 1.40889 * 119.89440 * 0.58218 * 12 11 10 14 14 C 1.41107 * 120.10446 * 179.67346 * 13 12 11 15 15 H 1.08002 * 120.00015 * 155.08677 * 14 13 12 16 16 C 1.40228 * 120.00189 * 335.08018 * 14 13 12 17 17 N 1.30647 * 119.99913 * 342.20913 * 16 14 13 18 18 Si 1.86793 * 120.00016 * 162.20515 * 16 14 13 19 19 H 1.48499 * 109.47314 * 94.66645 * 18 16 14 20 20 H 1.48500 * 109.47204 * 214.66343 * 18 16 14 21 21 H 1.48503 * 109.47417 * 334.66252 * 18 16 14 22 22 C 1.40888 * 119.79056 * 359.69599 * 13 12 11 23 23 C 1.36312 * 119.89452 * 359.97438 * 22 13 12 24 24 C 1.54476 * 104.06546 * 0.02562 * 5 4 2 25 25 O 1.44424 * 104.80107 * 336.01916 * 24 5 4 26 26 H 1.09007 * 109.47129 * 179.30106 * 1 2 3 27 27 H 1.09000 * 109.47165 * 299.29735 * 1 2 3 28 28 H 1.09000 * 109.47343 * 59.29959 * 1 2 3 29 29 H 1.09001 * 110.51308 * 261.49993 * 4 2 1 30 30 H 1.09002 * 110.51219 * 24.21318 * 4 2 1 31 31 H 0.97000 * 119.99608 * 338.83439 * 7 5 4 32 32 H 1.08000 * 119.94522 * 0.02562 * 11 10 8 33 33 H 1.08005 * 120.05342 * 180.25004 * 12 11 10 34 34 H 0.96998 * 119.99894 * 179.97438 * 17 16 14 35 35 H 1.08004 * 120.05198 * 179.97438 * 22 13 12 36 36 H 1.08002 * 119.94871 * 180.02562 * 23 22 13 37 37 H 1.09000 * 110.37109 * 217.19369 * 24 5 4 38 38 H 1.09001 * 110.46841 * 94.90194 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0701 -0.7736 1.2232 5 6 3.3207 -1.5031 0.6836 6 1 3.2002 -2.5829 0.7706 7 7 4.5226 -1.0630 1.3963 8 6 5.6245 -1.8390 1.4027 9 8 5.6212 -2.9043 0.8165 10 6 6.8356 -1.3957 2.1214 11 6 6.8388 -0.1660 2.7909 12 6 7.9527 0.2449 3.4607 13 6 9.1059 -0.5644 3.4683 14 6 10.2637 -0.1403 4.1544 15 1 10.9779 -0.8683 4.5099 16 6 10.4870 1.2265 4.3747 17 7 9.8398 2.1160 3.6700 18 14 11.7099 1.7752 5.6758 19 1 13.0313 2.0165 5.0427 20 1 11.2287 3.0288 6.3100 21 1 11.8418 0.7168 6.7090 22 6 9.0997 -1.7983 2.7883 23 6 7.9789 -2.2039 2.1269 24 6 3.3886 -1.0835 -0.8015 25 8 2.0332 -0.7217 -1.1450 26 1 -0.3634 -1.0277 -0.0125 27 1 -0.3633 0.5029 0.8962 28 1 -0.3634 0.5247 -0.8836 29 1 2.3450 -0.0833 2.0207 30 1 1.3313 -1.4928 1.5769 31 1 4.5253 -0.2130 1.8637 32 1 5.9557 0.4557 2.7808 33 1 7.9530 1.1918 3.9802 34 1 9.9940 3.0614 3.8226 35 1 9.9816 -2.4218 2.7910 36 1 7.9730 -3.1498 1.6056 37 1 3.7260 -1.9177 -1.4165 38 1 4.0528 -0.2282 -0.9260 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335466445.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:56 Heat of formation + Delta-G solvation = -92.312775 kcal Electronic energy + Delta-G solvation = -20472.260142 eV Core-core repulsion = 17277.950297 eV Total energy + Delta-G solvation = -3194.309845 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.27084 -40.07526 -38.80064 -35.68534 -35.64036 -33.08897 -32.34293 -31.31444 -30.58947 -27.64302 -26.92453 -24.15637 -22.94641 -22.61703 -21.88009 -21.35849 -19.37038 -18.55159 -17.81407 -17.17682 -16.65631 -16.58088 -16.11058 -15.74386 -15.66765 -15.28188 -15.03468 -14.47659 -14.27185 -13.93001 -13.70721 -13.52511 -13.23683 -13.11108 -12.97978 -12.83907 -12.67751 -12.54451 -12.37621 -12.09037 -11.79561 -11.76432 -11.37393 -11.11978 -10.86962 -10.73805 -10.10488 -9.57869 -9.41407 -8.80121 -6.48818 0.42790 1.14875 1.38729 1.42437 1.55114 2.09654 2.17754 2.23288 2.76746 2.97811 3.47097 3.66422 3.73138 3.91617 4.11473 4.17441 4.26315 4.31546 4.44038 4.44724 4.60833 4.69215 4.80697 4.89572 4.92322 4.95538 5.02936 5.10030 5.15304 5.29277 5.29495 5.46465 5.58487 5.81268 5.85654 5.93777 5.99001 6.22525 6.53447 6.66531 6.76756 6.88434 7.40380 8.15226 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.031084 B = 0.003548 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.566526 B = 7889.578765 C = 8506.464688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.062 3.938 3 H 0.078 0.922 4 C -0.148 4.148 5 C 0.114 3.886 6 H 0.082 0.918 7 N -0.715 5.715 8 C 0.573 3.427 9 O -0.603 6.603 10 C -0.295 4.295 11 C -0.052 4.052 12 C -0.198 4.198 13 C 0.102 3.898 14 C -0.474 4.474 15 H 0.085 0.915 16 C 0.039 3.961 17 N -0.797 5.797 18 Si 0.987 3.013 19 H -0.262 1.262 20 H -0.261 1.261 21 H -0.258 1.258 22 C -0.254 4.254 23 C -0.032 4.032 24 C 0.038 3.962 25 O -0.387 6.387 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.410 0.590 32 H 0.126 0.874 33 H 0.114 0.886 34 H 0.297 0.703 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.651 3.168 -0.381 13.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.004 3.996 3 H 0.096 0.904 4 C -0.186 4.186 5 C 0.008 3.992 6 H 0.100 0.900 7 N -0.368 5.368 8 C 0.367 3.633 9 O -0.487 6.487 10 C -0.299 4.299 11 C -0.071 4.071 12 C -0.217 4.217 13 C 0.099 3.901 14 C -0.501 4.501 15 H 0.103 0.897 16 C -0.180 4.180 17 N -0.420 5.420 18 Si 0.806 3.194 19 H -0.187 1.187 20 H -0.185 1.185 21 H -0.181 1.181 22 C -0.274 4.274 23 C -0.052 4.052 24 C -0.040 4.040 25 O -0.306 6.306 26 H 0.081 0.919 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.248 0.752 32 H 0.144 0.856 33 H 0.132 0.868 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.848 2.654 -1.053 13.161 hybrid contribution 1.017 0.451 0.538 1.236 sum -11.831 3.104 -0.515 12.242 Atomic orbital electron populations 1.21819 0.91339 1.03209 1.03600 1.23238 0.96775 0.95598 0.83951 0.90405 1.23281 0.95684 1.00552 0.99049 1.22250 0.85066 1.00327 0.91509 0.89971 1.45801 1.11929 1.23799 1.55282 1.18435 0.83434 0.82900 0.78504 1.90625 1.84682 1.25144 1.48251 1.19159 0.95478 1.00229 1.15049 1.20730 0.97659 0.93738 0.94982 1.21015 0.92920 1.01938 1.05837 1.18138 0.93216 0.91073 0.87685 1.20122 1.05641 0.93416 1.30893 0.89728 1.26910 0.98271 0.95991 0.96866 1.69755 1.35816 1.04020 1.32446 0.85112 0.77677 0.78724 0.77845 1.18688 1.18495 1.18134 1.20860 0.98521 1.00794 1.07185 1.20511 0.92250 0.97135 0.95257 1.23756 0.84502 1.00114 0.95617 1.89129 1.26757 1.75152 1.39600 0.91918 0.88862 0.91794 0.87924 0.88182 0.75218 0.85637 0.86786 0.89142 0.87883 0.87996 0.89726 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.53 71.98 0.69 -1.29 16 2 C 0.06 1.15 3.91 31.09 0.12 1.27 16 3 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.15 -2.70 6.40 31.61 0.20 -2.50 16 5 C 0.11 3.04 3.41 46.01 0.16 3.20 16 6 H 0.08 2.50 7.67 -2.39 -0.02 2.48 16 7 N -0.71 -21.83 5.07 -440.77 -2.23 -24.06 16 8 C 0.57 23.40 7.76 86.73 0.67 24.08 16 9 O -0.60 -28.15 16.03 -4.00 -0.06 -28.21 16 10 C -0.29 -13.13 5.89 -19.93 -0.12 -13.25 16 11 C -0.05 -2.21 9.47 22.25 0.21 -2.00 16 12 C -0.20 -9.54 8.63 22.47 0.19 -9.35 16 13 C 0.10 5.23 5.57 -21.28 -0.12 5.11 16 14 C -0.47 -23.64 9.04 23.46 0.21 -23.43 16 15 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 16 C 0.04 1.77 5.13 85.35 0.44 2.21 16 17 N -0.80 -37.37 10.97 21.87 0.24 -37.13 16 18 Si 0.99 34.17 29.60 68.60 2.03 36.20 16 19 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 20 H -0.26 -8.48 7.11 99.48 0.71 -7.78 16 21 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 22 C -0.25 -12.51 9.73 22.47 0.22 -12.29 16 23 C -0.03 -1.54 9.52 22.25 0.21 -1.32 16 24 C 0.04 1.06 7.35 72.48 0.53 1.59 16 25 O -0.39 -10.03 11.34 -148.98 -1.69 -11.72 16 26 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.10 1.54 7.66 -2.39 -0.02 1.52 16 30 H 0.10 1.59 7.88 -2.39 -0.02 1.57 16 31 H 0.41 10.55 6.32 -92.71 -0.59 9.96 16 32 H 0.13 4.22 6.37 -2.91 -0.02 4.20 16 33 H 0.11 5.56 6.17 -2.91 -0.02 5.54 16 34 H 0.30 12.34 8.29 -92.71 -0.77 11.57 16 35 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 36 H 0.10 4.72 7.63 -2.91 -0.02 4.70 16 37 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.06 1.72 8.06 -2.39 -0.02 1.70 16 Total: -1.00 -60.89 318.42 2.39 -58.50 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: 0.49 Total: 34.40 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 3.62 Total: -27.97 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: -1.99 Total: -61.19 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -1.75 Total: -39.94 kcal Atomic # 14 Polarization: 34.17 SS G_CDS: 2.03 Total: 36.20 kcal Total: -60.89 2.39 -58.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335466445.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.813 kcal (2) G-P(sol) polarization free energy of solvation -60.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds