Wall clock time and date at job start Mon Mar 30 2020 02:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 110.54944 * 2 1 4 4 C 1.54999 * 110.61699 * 123.05578 * 2 1 3 5 5 C 1.54808 * 102.08901 * 155.52592 * 4 2 1 6 6 H 1.09001 * 110.60577 * 97.85355 * 5 4 2 7 7 N 1.46508 * 110.48595 * 220.44304 * 5 4 2 8 8 C 1.34770 * 119.99885 * 201.22235 * 7 5 4 9 9 O 1.21593 * 120.00522 * 359.97438 * 8 7 5 10 10 C 1.47642 * 120.00137 * 179.97438 * 8 7 5 11 11 C 1.40006 * 119.90106 * 180.02562 * 10 8 7 12 12 C 1.36322 * 120.11163 * 179.97438 * 11 10 8 13 13 C 1.40881 * 119.88887 * 359.97438 * 12 11 10 14 14 C 1.41108 * 120.10470 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99764 * 335.47662 * 14 13 12 16 16 C 1.40228 * 120.00106 * 155.47291 * 14 13 12 17 17 N 1.30645 * 119.99872 * 342.27683 * 16 14 13 18 18 Si 1.86795 * 120.00027 * 162.28277 * 16 14 13 19 19 H 1.48504 * 109.47315 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.46967 * 299.99752 * 18 16 14 21 21 H 1.48504 * 109.47445 * 59.99714 * 18 16 14 22 22 C 1.40891 * 119.79318 * 0.25813 * 13 12 11 23 23 C 1.36317 * 119.89470 * 359.50287 * 22 13 12 24 24 C 1.54103 * 104.19281 * 339.11554 * 5 4 2 25 25 O 1.43746 * 107.29015 * 357.97007 * 24 5 4 26 26 H 1.09000 * 109.47451 * 181.41825 * 1 2 3 27 27 H 1.08997 * 109.47477 * 301.42381 * 1 2 3 28 28 H 1.09003 * 109.46987 * 61.42385 * 1 2 3 29 29 H 1.08997 * 110.90657 * 37.32544 * 4 2 1 30 30 H 1.08994 * 110.90339 * 273.71699 * 4 2 1 31 31 H 0.96993 * 119.99818 * 21.21297 * 7 5 4 32 32 H 1.08001 * 119.94749 * 0.02562 * 11 10 8 33 33 H 1.07999 * 120.05174 * 179.97438 * 12 11 10 34 34 H 0.96998 * 120.00158 * 179.97438 * 17 16 14 35 35 H 1.08007 * 120.05140 * 179.72192 * 22 13 12 36 36 H 1.07991 * 119.95152 * 180.25589 * 23 22 13 37 37 H 1.09000 * 109.88115 * 117.39755 * 24 5 4 38 38 H 1.08993 * 109.87989 * 238.40049 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0757 -0.7913 1.2159 5 6 3.4794 -1.2178 0.7216 6 1 4.2423 -0.5367 1.0986 7 7 3.7724 -2.5928 1.1341 8 6 5.0491 -3.0197 1.1974 9 8 5.9579 -2.2640 0.9118 10 6 5.3445 -4.4051 1.6137 11 6 6.6716 -4.8462 1.6793 12 6 6.9492 -6.1244 2.0635 13 6 5.8981 -7.0017 2.3955 14 6 6.1802 -8.3258 2.7934 15 1 7.1003 -8.7984 2.4829 16 6 5.2660 -9.0279 3.5920 17 7 4.3421 -8.3803 4.2505 18 14 5.3694 -10.8889 3.7142 19 1 4.2977 -11.3863 4.6139 20 1 5.1976 -11.4839 2.3645 21 1 6.6948 -11.2763 4.2608 22 6 4.5639 -6.5546 2.3233 23 6 4.2964 -5.2733 1.9426 24 6 3.3839 -1.1242 -0.8136 25 8 2.0384 -0.7336 -1.1350 26 1 -0.3634 -1.0273 0.0254 27 1 -0.3634 0.5358 0.8769 28 1 -0.3633 0.4916 -0.9025 29 1 1.4549 -1.6628 1.4232 30 1 2.1509 -0.1509 2.0947 31 1 3.0475 -3.1957 1.3617 32 1 7.4768 -4.1726 1.4258 33 1 7.9733 -6.4638 2.1134 34 1 3.7095 -8.8659 4.8027 35 1 3.7546 -7.2250 2.5725 36 1 3.2743 -4.9285 1.8910 37 1 4.0854 -0.3764 -1.1837 38 1 3.6070 -2.0938 -1.2587 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335466446.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:59 Heat of formation + Delta-G solvation = -75.745842 kcal Electronic energy + Delta-G solvation = -20483.479852 eV Core-core repulsion = 17289.888403 eV Total energy + Delta-G solvation = -3193.591449 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.99949 -38.61899 -37.06929 -34.22247 -33.90037 -32.22064 -30.75803 -29.50102 -29.24041 -26.18755 -25.79042 -22.60312 -21.42671 -21.21400 -20.71763 -19.56390 -17.55737 -17.08755 -16.73667 -15.89590 -15.58659 -15.39920 -14.59610 -14.08013 -14.02238 -13.66994 -13.46572 -13.20389 -12.77782 -12.62021 -12.52202 -12.13871 -11.97199 -11.85395 -11.57468 -11.39058 -11.31727 -11.24000 -11.03657 -10.94003 -10.66836 -10.08949 -9.77846 -9.58317 -9.37960 -9.02326 -8.66363 -7.75176 -7.57739 -7.06492 -4.63411 2.19346 2.90447 2.92683 2.96660 3.01018 3.60548 3.71271 3.77746 3.85940 4.41945 4.55389 4.66566 4.87830 5.05356 5.16960 5.20502 5.46541 5.49294 5.54632 5.66745 5.75172 5.81971 5.94049 5.96426 6.02484 6.10873 6.28861 6.74043 6.79739 6.83942 6.87915 7.02316 7.10462 7.40406 7.61853 7.75543 7.82953 8.04052 8.17565 8.36748 8.60039 8.72263 9.00818 9.85480 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.029493 B = 0.003602 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.134190 B = 7770.891755 C = 8426.743139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.071 3.929 3 H 0.071 0.929 4 C -0.157 4.157 5 C 0.118 3.882 6 H 0.098 0.902 7 N -0.733 5.733 8 C 0.572 3.428 9 O -0.575 6.575 10 C -0.287 4.287 11 C -0.021 4.021 12 C -0.239 4.239 13 C 0.129 3.871 14 C -0.442 4.442 15 H 0.085 0.915 16 C 0.074 3.926 17 N -0.771 5.771 18 Si 0.915 3.085 19 H -0.275 1.275 20 H -0.260 1.260 21 H -0.262 1.262 22 C -0.178 4.178 23 C -0.062 4.062 24 C 0.037 3.963 25 O -0.376 6.376 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.399 0.601 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.287 0.713 35 H 0.120 0.880 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.745 8.510 -2.909 11.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 H 0.089 0.911 4 C -0.195 4.195 5 C 0.012 3.988 6 H 0.116 0.884 7 N -0.387 5.387 8 C 0.367 3.633 9 O -0.457 6.457 10 C -0.291 4.291 11 C -0.040 4.040 12 C -0.259 4.259 13 C 0.126 3.874 14 C -0.470 4.470 15 H 0.103 0.897 16 C -0.147 4.147 17 N -0.394 5.394 18 Si 0.738 3.262 19 H -0.200 1.200 20 H -0.184 1.184 21 H -0.186 1.186 22 C -0.197 4.197 23 C -0.081 4.081 24 C -0.041 4.041 25 O -0.295 6.295 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.235 0.765 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.138 0.862 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.416 8.971 -3.118 12.050 hybrid contribution -0.242 -1.056 0.523 1.203 sum -7.659 7.915 -2.595 11.315 Atomic orbital electron populations 1.21768 0.93075 1.03049 1.02381 1.23081 0.95278 0.95315 0.84955 0.91111 1.23465 0.95706 1.01438 0.98932 1.22147 0.97010 0.85797 0.93881 0.88423 1.45988 1.08882 1.12203 1.71591 1.18647 0.81224 0.88025 0.75373 1.90635 1.45326 1.57520 1.52193 1.18868 0.94674 0.93020 1.22543 1.20358 0.94381 0.95061 0.94188 1.20719 0.97814 0.94072 1.13290 1.17783 0.91341 0.92151 0.86112 1.19837 1.04267 0.97366 1.25496 0.89701 1.26107 0.93685 1.01640 0.93274 1.69732 1.12762 1.38773 1.18157 0.86248 0.79271 0.81160 0.79524 1.20028 1.18446 1.18641 1.20977 0.97202 0.95402 1.06167 1.20467 0.95576 0.94432 0.97639 1.23684 0.83730 1.01286 0.95446 1.88889 1.28199 1.73675 1.38773 0.91687 0.91126 0.91832 0.89690 0.89514 0.76499 0.88103 0.88358 0.90139 0.86200 0.89366 0.91822 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.66 37.16 0.36 -0.87 16 2 C 0.07 0.75 3.98 -25.68 -0.10 0.65 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.16 -1.68 6.30 -24.72 -0.16 -1.84 16 5 C 0.12 1.65 3.35 -66.40 -0.22 1.43 16 6 H 0.10 1.46 7.66 -51.93 -0.40 1.06 16 7 N -0.73 -12.10 5.00 -53.32 -0.27 -12.37 16 8 C 0.57 11.96 7.76 -12.42 -0.10 11.87 16 9 O -0.57 -13.39 16.03 5.28 0.08 -13.30 16 10 C -0.29 -6.49 5.89 -104.73 -0.62 -7.10 16 11 C -0.02 -0.48 9.52 -39.61 -0.38 -0.86 16 12 C -0.24 -5.76 9.73 -39.27 -0.38 -6.15 16 13 C 0.13 3.27 5.57 -106.80 -0.60 2.68 16 14 C -0.44 -10.91 9.04 -37.75 -0.34 -11.25 16 15 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 16 C 0.07 1.72 5.14 -17.31 -0.09 1.63 16 17 N -0.77 -18.27 10.95 55.56 0.61 -17.67 16 18 Si 0.91 17.10 29.60 -169.99 -5.03 12.07 16 19 H -0.28 -5.00 7.11 56.52 0.40 -4.60 16 20 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 21 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 22 C -0.18 -4.33 8.63 -39.27 -0.34 -4.67 16 23 C -0.06 -1.36 9.47 -39.61 -0.38 -1.73 16 24 C 0.04 0.52 7.50 37.73 0.28 0.80 16 25 O -0.38 -5.15 11.22 -35.23 -0.40 -5.55 16 26 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.88 7.65 -51.93 -0.40 0.49 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.40 5.97 6.35 -40.82 -0.26 5.71 16 32 H 0.10 2.28 7.63 -52.49 -0.40 1.88 16 33 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 34 H 0.29 6.13 8.29 -40.82 -0.34 5.80 16 35 H 0.12 2.94 6.16 -52.48 -0.32 2.62 16 36 H 0.09 1.64 6.37 -52.49 -0.33 1.30 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 1.39 7.93 -51.93 -0.41 0.98 16 LS Contribution 318.53 15.07 4.80 4.80 Total: -1.00 -28.13 318.53 -8.28 -36.41 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -5.03 Total: 11.03 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -3.05 Total: -15.42 kcal Atomic # 7 Polarization: -30.38 SS G_CDS: 0.34 Total: -30.04 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.31 Total: -18.85 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.13 -8.28 -36.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335466446.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.334 kcal (2) G-P(sol) polarization free energy of solvation -28.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds