Wall clock time and date at job start Mon Mar 30 2020 02:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 110.54944 * 2 1 4 4 C 1.54999 * 110.61699 * 123.05578 * 2 1 3 5 5 C 1.54808 * 102.08901 * 155.52592 * 4 2 1 6 6 H 1.09001 * 110.60577 * 97.85355 * 5 4 2 7 7 N 1.46508 * 110.48595 * 220.44304 * 5 4 2 8 8 C 1.34770 * 119.99885 * 201.22235 * 7 5 4 9 9 O 1.21593 * 120.00522 * 359.97438 * 8 7 5 10 10 C 1.47642 * 120.00137 * 179.97438 * 8 7 5 11 11 C 1.40006 * 119.90106 * 180.02562 * 10 8 7 12 12 C 1.36322 * 120.11163 * 179.97438 * 11 10 8 13 13 C 1.40881 * 119.88887 * 359.97438 * 12 11 10 14 14 C 1.41108 * 120.10470 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99764 * 335.47662 * 14 13 12 16 16 C 1.40228 * 120.00106 * 155.47291 * 14 13 12 17 17 N 1.30645 * 119.99872 * 342.27683 * 16 14 13 18 18 Si 1.86795 * 120.00027 * 162.28277 * 16 14 13 19 19 H 1.48504 * 109.47315 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.46967 * 299.99752 * 18 16 14 21 21 H 1.48504 * 109.47445 * 59.99714 * 18 16 14 22 22 C 1.40891 * 119.79318 * 0.25813 * 13 12 11 23 23 C 1.36317 * 119.89470 * 359.50287 * 22 13 12 24 24 C 1.54103 * 104.19281 * 339.11554 * 5 4 2 25 25 O 1.43746 * 107.29015 * 357.97007 * 24 5 4 26 26 H 1.09000 * 109.47451 * 181.41825 * 1 2 3 27 27 H 1.08997 * 109.47477 * 301.42381 * 1 2 3 28 28 H 1.09003 * 109.46987 * 61.42385 * 1 2 3 29 29 H 1.08997 * 110.90657 * 37.32544 * 4 2 1 30 30 H 1.08994 * 110.90339 * 273.71699 * 4 2 1 31 31 H 0.96993 * 119.99818 * 21.21297 * 7 5 4 32 32 H 1.08001 * 119.94749 * 0.02562 * 11 10 8 33 33 H 1.07999 * 120.05174 * 179.97438 * 12 11 10 34 34 H 0.96998 * 120.00158 * 179.97438 * 17 16 14 35 35 H 1.08007 * 120.05140 * 179.72192 * 22 13 12 36 36 H 1.07991 * 119.95152 * 180.25589 * 23 22 13 37 37 H 1.09000 * 109.88115 * 117.39755 * 24 5 4 38 38 H 1.08993 * 109.87989 * 238.40049 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0757 -0.7913 1.2159 5 6 3.4794 -1.2178 0.7216 6 1 4.2423 -0.5367 1.0986 7 7 3.7724 -2.5928 1.1341 8 6 5.0491 -3.0197 1.1974 9 8 5.9579 -2.2640 0.9118 10 6 5.3445 -4.4051 1.6137 11 6 6.6716 -4.8462 1.6793 12 6 6.9492 -6.1244 2.0635 13 6 5.8981 -7.0017 2.3955 14 6 6.1802 -8.3258 2.7934 15 1 7.1003 -8.7984 2.4829 16 6 5.2660 -9.0279 3.5920 17 7 4.3421 -8.3803 4.2505 18 14 5.3694 -10.8889 3.7142 19 1 4.2977 -11.3863 4.6139 20 1 5.1976 -11.4839 2.3645 21 1 6.6948 -11.2763 4.2608 22 6 4.5639 -6.5546 2.3233 23 6 4.2964 -5.2733 1.9426 24 6 3.3839 -1.1242 -0.8136 25 8 2.0384 -0.7336 -1.1350 26 1 -0.3634 -1.0273 0.0254 27 1 -0.3634 0.5358 0.8769 28 1 -0.3633 0.4916 -0.9025 29 1 1.4549 -1.6628 1.4232 30 1 2.1509 -0.1509 2.0947 31 1 3.0475 -3.1957 1.3617 32 1 7.4768 -4.1726 1.4258 33 1 7.9733 -6.4638 2.1134 34 1 3.7095 -8.8659 4.8027 35 1 3.7546 -7.2250 2.5725 36 1 3.2743 -4.9285 1.8910 37 1 4.0854 -0.3764 -1.1837 38 1 3.6070 -2.0938 -1.2587 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335466446.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:59 Heat of formation + Delta-G solvation = -92.355834 kcal Electronic energy + Delta-G solvation = -20484.200116 eV Core-core repulsion = 17289.888403 eV Total energy + Delta-G solvation = -3194.311713 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.27007 -40.06719 -38.80224 -35.68310 -35.62095 -33.09621 -32.35063 -31.31828 -30.62964 -27.65900 -26.97998 -24.17691 -22.89760 -22.39865 -22.16038 -21.09947 -19.37233 -18.57230 -17.85121 -17.29018 -17.04979 -16.55385 -15.96582 -15.75642 -15.56869 -15.10037 -15.02523 -14.43575 -14.31774 -13.90062 -13.70018 -13.42468 -13.41859 -13.20269 -12.86192 -12.78257 -12.68779 -12.51575 -12.36945 -12.23051 -11.83731 -11.78092 -11.37564 -11.12490 -10.80004 -10.73043 -10.07190 -9.58443 -9.42052 -8.80154 -6.49339 0.42530 1.14381 1.38923 1.44367 1.52195 2.09421 2.17334 2.26837 2.75912 2.87316 3.45670 3.67932 3.77489 3.97295 4.02060 4.21425 4.24326 4.31179 4.43839 4.44464 4.60540 4.68079 4.82098 4.87290 4.91539 4.95622 5.02203 5.10093 5.14856 5.28969 5.30408 5.54052 5.58837 5.80407 5.88649 5.93830 5.98529 6.21890 6.52902 6.65472 6.76217 6.87931 7.39309 8.14924 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.029493 B = 0.003602 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.134190 B = 7770.891755 C = 8426.743139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.066 3.934 3 H 0.085 0.915 4 C -0.147 4.147 5 C 0.112 3.888 6 H 0.090 0.910 7 N -0.716 5.716 8 C 0.573 3.427 9 O -0.602 6.602 10 C -0.296 4.296 11 C -0.032 4.032 12 C -0.254 4.254 13 C 0.102 3.898 14 C -0.474 4.474 15 H 0.085 0.915 16 C 0.039 3.961 17 N -0.797 5.797 18 Si 0.988 3.012 19 H -0.263 1.263 20 H -0.259 1.259 21 H -0.259 1.259 22 C -0.198 4.198 23 C -0.053 4.053 24 C 0.041 3.959 25 O -0.392 6.392 26 H 0.059 0.941 27 H 0.094 0.906 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.408 0.592 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.298 0.702 35 H 0.114 0.886 36 H 0.123 0.877 37 H 0.067 0.933 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.521 8.783 -2.460 13.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.009 3.991 3 H 0.103 0.897 4 C -0.185 4.185 5 C 0.007 3.993 6 H 0.108 0.892 7 N -0.369 5.369 8 C 0.367 3.633 9 O -0.486 6.486 10 C -0.300 4.300 11 C -0.051 4.051 12 C -0.274 4.274 13 C 0.099 3.901 14 C -0.501 4.501 15 H 0.104 0.896 16 C -0.181 4.181 17 N -0.420 5.420 18 Si 0.807 3.193 19 H -0.187 1.187 20 H -0.183 1.183 21 H -0.183 1.183 22 C -0.218 4.218 23 C -0.072 4.072 24 C -0.038 4.038 25 O -0.312 6.312 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.127 0.873 31 H 0.246 0.754 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.109 0.891 35 H 0.132 0.868 36 H 0.141 0.859 37 H 0.085 0.915 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.233 9.272 -2.670 13.355 hybrid contribution 0.270 -1.015 0.363 1.111 sum -8.963 8.257 -2.306 12.403 Atomic orbital electron populations 1.21792 0.91372 1.03166 1.03642 1.23364 0.96614 0.95547 0.83589 0.89715 1.23480 0.93163 1.02085 0.99794 1.22344 0.98981 0.83916 0.94094 0.89199 1.45836 1.07516 1.13512 1.70032 1.18419 0.82388 0.87161 0.75303 1.90618 1.46550 1.57946 1.53523 1.19167 0.94562 0.94264 1.22037 1.20510 0.95233 0.94960 0.94373 1.20861 0.98109 0.94420 1.13968 1.18131 0.92131 0.92939 0.86885 1.20114 1.05344 0.97865 1.26792 0.89645 1.26923 0.92829 1.06134 0.92192 1.69749 1.13195 1.40781 1.18279 0.85155 0.79560 0.74950 0.79594 1.18710 1.18285 1.18304 1.21017 0.96718 0.96391 1.07635 1.20722 0.97156 0.93416 0.95903 1.23527 0.84447 1.00521 0.95261 1.88883 1.27690 1.74244 1.40356 0.92202 0.88763 0.91659 0.89030 0.87316 0.75421 0.87887 0.87795 0.89117 0.86823 0.85917 0.91517 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.66 71.98 0.70 -1.29 16 2 C 0.07 1.20 3.98 31.28 0.12 1.33 16 3 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.15 -2.72 6.30 31.90 0.20 -2.52 16 5 C 0.11 2.96 3.35 45.98 0.15 3.12 16 6 H 0.09 2.57 7.66 -2.39 -0.02 2.55 16 7 N -0.72 -22.62 5.00 -440.88 -2.20 -24.82 16 8 C 0.57 23.69 7.76 86.73 0.67 24.37 16 9 O -0.60 -28.05 16.03 -4.01 -0.06 -28.11 16 10 C -0.30 -13.39 5.89 -19.93 -0.12 -13.50 16 11 C -0.03 -1.51 9.52 22.25 0.21 -1.30 16 12 C -0.25 -12.59 9.73 22.47 0.22 -12.37 16 13 C 0.10 5.30 5.57 -21.28 -0.12 5.18 16 14 C -0.47 -23.83 9.04 23.46 0.21 -23.62 16 15 H 0.09 4.11 7.91 -2.91 -0.02 4.09 16 16 C 0.04 1.77 5.14 85.35 0.44 2.21 16 17 N -0.80 -37.66 10.95 21.87 0.24 -37.42 16 18 Si 0.99 34.44 29.60 68.60 2.03 36.47 16 19 H -0.26 -8.57 7.11 99.48 0.71 -7.86 16 20 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 21 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 22 C -0.20 -9.73 8.63 22.47 0.19 -9.53 16 23 C -0.05 -2.30 9.47 22.25 0.21 -2.09 16 24 C 0.04 1.11 7.50 72.36 0.54 1.66 16 25 O -0.39 -10.10 11.22 -148.98 -1.67 -11.78 16 26 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 27 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 1.60 7.65 -2.39 -0.02 1.58 16 30 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.41 11.32 6.35 -92.71 -0.59 10.73 16 32 H 0.10 4.78 7.63 -2.91 -0.02 4.76 16 33 H 0.10 4.84 8.06 -2.91 -0.02 4.81 16 34 H 0.30 12.49 8.29 -92.71 -0.77 11.72 16 35 H 0.11 5.64 6.16 -2.91 -0.02 5.63 16 36 H 0.12 4.33 6.37 -2.91 -0.02 4.31 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 2.20 7.93 -2.39 -0.02 2.18 16 Total: -1.00 -61.06 318.53 2.46 -58.61 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: 0.49 Total: 35.41 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 3.64 Total: -28.36 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: -1.96 Total: -62.24 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -1.74 Total: -39.89 kcal Atomic # 14 Polarization: 34.44 SS G_CDS: 2.03 Total: 36.47 kcal Total: -61.06 2.46 -58.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335466446.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.750 kcal (2) G-P(sol) polarization free energy of solvation -61.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds