Wall clock time and date at job start Mon Mar 30 2020 02:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09009 * 110.41669 * 2 1 4 4 C 1.54474 * 110.37449 * 237.69524 * 2 1 3 5 5 C 1.54510 * 104.06496 * 217.18874 * 4 2 1 6 6 H 1.08999 * 110.62569 * 118.69632 * 5 4 2 7 7 N 1.46501 * 110.50952 * 241.35354 * 5 4 2 8 8 C 1.34775 * 119.99628 * 201.09157 * 7 5 4 9 9 O 1.21547 * 120.00326 * 0.02562 * 8 7 5 10 10 C 1.47893 * 119.99785 * 179.97438 * 8 7 5 11 11 C 1.39915 * 120.02249 * 0.02651 * 10 8 7 12 12 C 1.38335 * 120.35552 * 179.97438 * 11 10 8 13 13 C 1.37746 * 120.41163 * 359.97438 * 12 11 10 14 14 C 1.40756 * 120.04126 * 0.02562 * 13 12 11 15 15 C 1.41441 * 120.17565 * 180.27377 * 14 13 12 16 16 H 1.07996 * 119.99433 * 149.96442 * 15 14 13 17 17 C 1.39931 * 120.00065 * 329.96837 * 15 14 13 18 18 N 1.30828 * 119.99887 * 161.80725 * 17 15 14 19 19 Si 1.86802 * 120.00175 * 341.80221 * 17 15 14 20 20 H 1.48503 * 109.47188 * 95.41217 * 19 17 15 21 21 H 1.48498 * 109.47244 * 215.41126 * 19 17 15 22 22 H 1.48498 * 109.47007 * 335.41437 * 19 17 15 23 23 C 1.38994 * 120.02349 * 180.02562 * 10 8 7 24 24 C 1.54480 * 104.06011 * 359.97438 * 5 4 2 25 25 O 1.44419 * 110.37401 * 122.30888 * 2 1 3 26 26 H 1.08999 * 109.46872 * 299.13960 * 1 2 3 27 27 H 1.08996 * 109.47128 * 59.14287 * 1 2 3 28 28 H 1.08998 * 109.46807 * 179.14229 * 1 2 3 29 29 H 1.09001 * 110.51553 * 98.53742 * 4 2 1 30 30 H 1.09001 * 110.51117 * 335.82957 * 4 2 1 31 31 H 0.96997 * 119.99662 * 21.09504 * 7 5 4 32 32 H 1.07996 * 119.82438 * 359.97438 * 11 10 8 33 33 H 1.07999 * 119.79009 * 180.02562 * 12 11 10 34 34 H 1.07998 * 119.97967 * 180.02562 * 13 12 11 35 35 H 0.96999 * 120.00220 * 179.97438 * 18 17 15 36 36 H 1.07997 * 120.20513 * 0.02562 * 23 10 8 37 37 H 1.09001 * 110.37444 * 142.80989 * 24 5 4 38 38 H 1.09000 * 110.37164 * 265.03873 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 6 2.0679 -0.7739 -1.2240 5 6 3.3179 -1.5056 -0.6860 6 1 3.1980 -2.5854 -0.7733 7 7 4.5182 -1.0641 -1.4004 8 6 5.6207 -1.8393 -1.4089 9 8 5.6189 -2.9048 -0.8241 10 6 6.8323 -1.3939 -2.1306 11 6 6.8347 -0.1676 -2.8043 12 6 7.9644 0.2560 -3.4812 13 6 9.0997 -0.5238 -3.4994 14 6 9.1161 -1.7604 -2.8273 15 6 10.2822 -2.5608 -2.8394 16 1 10.5004 -3.2095 -2.0040 17 6 11.1532 -2.5118 -3.9335 18 7 12.3791 -2.9528 -3.8140 19 14 10.5654 -1.8170 -5.5648 20 1 10.9475 -0.3851 -5.6595 21 1 11.1932 -2.5715 -6.6792 22 1 9.0883 -1.9420 -5.6527 23 6 7.9694 -2.1931 -2.1401 24 6 3.3878 -1.0866 0.7993 25 8 2.0328 -0.7236 1.1442 26 1 -0.3633 0.5004 0.8976 27 1 -0.3633 0.5271 -0.8822 28 1 -0.3633 -1.0276 -0.0154 29 1 2.3429 -0.0838 -2.0216 30 1 1.3277 -1.4918 -1.5773 31 1 4.5195 -0.2139 -1.8673 32 1 5.9499 0.4516 -2.7959 33 1 7.9563 1.2044 -3.9978 34 1 9.9779 -0.1861 -4.0296 35 1 12.9827 -2.9192 -4.5725 36 1 7.9719 -3.1406 -1.6218 37 1 3.7246 -1.9216 1.4137 38 1 4.0545 -0.2331 0.9218 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335479804.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:15 Heat of formation + Delta-G solvation = -70.116371 kcal Electronic energy + Delta-G solvation = -20548.758472 eV Core-core repulsion = 17355.411135 eV Total energy + Delta-G solvation = -3193.347337 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.22572 -38.91466 -37.29879 -34.53942 -33.71740 -32.32841 -31.10757 -30.17922 -29.34280 -26.17666 -25.26924 -23.50665 -21.87304 -21.12711 -20.66252 -20.15627 -18.02795 -16.85411 -16.43871 -15.89704 -15.75048 -15.26510 -15.11947 -14.73051 -14.37546 -13.76057 -13.72456 -13.40751 -12.89651 -12.79840 -12.72992 -12.43969 -12.18940 -12.08040 -11.71419 -11.67963 -11.34930 -11.09074 -10.94749 -10.82584 -10.59070 -10.05586 -10.00153 -9.77249 -9.49627 -9.20160 -8.95007 -7.92510 -7.80942 -7.04321 -4.59535 1.84552 2.46969 3.02096 3.14287 3.22165 3.27287 3.52692 3.82717 3.89458 4.30749 4.42042 4.48514 4.74937 4.94654 4.98724 5.14253 5.27131 5.31908 5.37076 5.39525 5.54162 5.72502 5.77877 5.80093 5.85817 5.88934 5.96790 6.34303 6.44274 6.61141 6.62936 6.75622 6.93201 7.15970 7.34890 7.44457 7.68934 7.72641 7.94423 8.24154 8.48436 8.60089 8.67521 9.97802 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.042107 B = 0.003634 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.814193 B = 7702.234069 C = 8055.101895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 H 0.070 0.930 4 C -0.158 4.158 5 C 0.115 3.885 6 H 0.101 0.899 7 N -0.727 5.727 8 C 0.565 3.435 9 O -0.544 6.544 10 C -0.109 4.109 11 C -0.217 4.217 12 C -0.083 4.083 13 C -0.221 4.221 14 C 0.082 3.918 15 C -0.442 4.442 16 H 0.094 0.906 17 C 0.083 3.917 18 N -0.803 5.803 19 Si 0.911 3.089 20 H -0.269 1.269 21 H -0.289 1.289 22 H -0.244 1.244 23 C -0.135 4.135 24 C 0.035 3.965 25 O -0.371 6.371 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.401 0.599 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.287 0.713 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.020 7.419 1.372 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.088 0.912 4 C -0.196 4.196 5 C 0.009 3.991 6 H 0.119 0.881 7 N -0.381 5.381 8 C 0.355 3.645 9 O -0.422 6.422 10 C -0.112 4.112 11 C -0.237 4.237 12 C -0.101 4.101 13 C -0.241 4.241 14 C 0.079 3.921 15 C -0.470 4.470 16 H 0.112 0.888 17 C -0.136 4.136 18 N -0.426 5.426 19 Si 0.737 3.263 20 H -0.195 1.195 21 H -0.216 1.216 22 H -0.167 1.167 23 C -0.155 4.155 24 C -0.043 4.043 25 O -0.290 6.290 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.238 0.762 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.134 0.866 37 H 0.117 0.883 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.866 6.495 1.937 18.177 hybrid contribution 0.168 0.804 -1.198 1.452 sum -16.698 7.298 0.740 18.239 Atomic orbital electron populations 1.21805 0.93090 1.03001 1.02456 1.22981 0.95399 0.95517 0.85037 0.91230 1.23289 0.97339 1.00285 0.98714 1.22225 0.84415 1.00941 0.91480 0.88078 1.46026 1.12505 1.24071 1.55532 1.18851 0.83064 0.83283 0.79299 1.90706 1.83592 1.22872 1.45068 1.19400 0.93361 0.96773 1.01706 1.20366 0.98457 0.97513 1.07413 1.20510 0.93307 0.98102 0.98173 1.21189 0.98234 0.96262 1.08401 1.17701 0.92114 0.91481 0.90827 1.19532 1.01541 1.21280 1.04629 0.88794 1.26175 0.93402 0.92505 1.01564 1.69689 1.04563 1.35133 1.33218 0.86307 0.81684 0.78556 0.79727 1.19522 1.21601 1.16704 1.21279 0.91247 0.99106 1.03882 1.23904 0.84109 1.00760 0.95549 1.89161 1.27231 1.74508 1.38060 0.91807 0.91130 0.91684 0.89724 0.89446 0.76227 0.88668 0.88261 0.87858 0.90263 0.86624 0.88274 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.52 37.16 0.35 -0.72 16 2 C 0.07 0.64 3.92 -25.96 -0.10 0.54 16 3 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 4 C -0.16 -1.44 6.39 -25.17 -0.16 -1.60 16 5 C 0.12 1.43 3.42 -66.36 -0.23 1.21 16 6 H 0.10 1.41 7.67 -51.93 -0.40 1.01 16 7 N -0.73 -10.24 5.06 -53.21 -0.27 -10.51 16 8 C 0.56 10.69 7.77 -12.31 -0.10 10.60 16 9 O -0.54 -11.90 16.04 5.32 0.09 -11.82 16 10 C -0.11 -2.27 5.87 -105.04 -0.62 -2.89 16 11 C -0.22 -4.07 9.55 -38.92 -0.37 -4.44 16 12 C -0.08 -1.64 10.01 -39.73 -0.40 -2.04 16 13 C -0.22 -5.07 7.18 -38.81 -0.28 -5.35 16 14 C 0.08 2.03 5.10 -106.87 -0.54 1.49 16 15 C -0.44 -11.76 9.57 -37.73 -0.36 -12.12 16 16 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 17 C 0.08 2.13 5.40 -17.35 -0.09 2.04 16 18 N -0.80 -20.96 13.93 55.55 0.77 -20.19 16 19 Si 0.91 20.09 24.52 -169.99 -4.17 15.92 16 20 H -0.27 -5.69 6.71 56.52 0.38 -5.31 16 21 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.24 -5.50 6.87 56.52 0.39 -5.11 16 23 C -0.13 -3.20 9.34 -38.44 -0.36 -3.56 16 24 C 0.03 0.44 7.35 37.93 0.28 0.72 16 25 O -0.37 -4.59 11.35 -35.23 -0.40 -4.99 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 29 H 0.08 0.66 7.65 -51.93 -0.40 0.26 16 30 H 0.09 0.72 7.86 -51.93 -0.41 0.32 16 31 H 0.40 4.74 6.33 -40.82 -0.26 4.48 16 32 H 0.10 1.41 6.38 -52.49 -0.33 1.07 16 33 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.10 2.35 4.72 -52.49 -0.25 2.10 16 35 H 0.29 6.75 8.30 -40.82 -0.34 6.41 16 36 H 0.12 2.80 7.64 -52.49 -0.40 2.40 16 37 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 LS Contribution 313.37 15.07 4.72 4.72 Total: -1.00 -28.92 313.37 -7.22 -36.14 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -4.99 Total: 6.86 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -2.97 Total: -16.14 kcal Atomic # 7 Polarization: -31.20 SS G_CDS: 0.50 Total: -30.70 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.31 Total: -16.81 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.17 Total: 15.92 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.92 -7.22 -36.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335479804.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.976 kcal (2) G-P(sol) polarization free energy of solvation -28.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds